fragmentation-graph-cpp/CMakeLists.txt at main · commons-research/fragmentation-graph-cpp · GitHub

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cmake_minimum_required(VERSION 3.30)
set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
if (NOT CMAKE_BUILD_TYPE)
	set(CMAKE_BUILD_TYPE Release)
endif ()

set(CMAKE_CXX_STANDARD 20)
set(CMAKE_CXX_STANDARD_REQUIRED True)

# Project
project(fraggraph LANGUAGES CXX)

# Executable
add_executable(${PROJECT_NAME} main.cpp)

file(GLOB_RECURSE CORE_SOURCES CONFIGURE_DEPENDS src/* tests/integrationtests/*)

# Download coretools and stattools
include(FetchContent)
FetchContent_Declare(coretools
	GIT_REPOSITORY https://bitbucket.org/wegmannlab/coretools.git
	GIT_TAG madleina/interface_stattools
	SOURCE_DIR "${CMAKE_SOURCE_DIR}/coretools"
)

FetchContent_Declare(frozen
	GIT_REPOSITORY https://github.com/serge-sans-paille/frozen.git
	GIT_TAG master
	SOURCE_DIR "${CMAKE_SOURCE_DIR}/frozen"
)

FetchContent_MakeAvailable(coretools frozen)


find_package(OpenMP REQUIRED)
if (OpenMP_CXX_FOUND)
	target_link_libraries(${PROJECT_NAME} PUBLIC OpenMP::OpenMP_CXX)
endif ()

find_package(RDKit REQUIRED)
# set the rdkit libraries
set(RDKIT_LIBRARIES
	RDKit::GraphMol
	RDKit::SmilesParse
	RDKit::SubstructMatch
	RDKit::Fingerprints
	RDKit::DataStructs
	RDKit::RDGeneral
	RDKit::RDInchiLib
	RDKit::ChemReactions
)
find_package(Boost CONFIG COMPONENTS timer system REQUIRED)
find_package(ZLIB REQUIRED)
target_sources(${PROJECT_NAME} PRIVATE ${CORE_SOURCES})
target_include_directories(${PROJECT_NAME} PRIVATE src)
target_link_libraries(${PROJECT_NAME} PRIVATE coretools frozen ${ZLIB_LIBRARIES} ${ARMADILLO_LIBRARIES} Boost::timer ${RDKIT_LIBRARIES})
target_compile_features(${PROJECT_NAME} PRIVATE cxx_std_20)
set_target_properties(${PROJECT_NAME} PROPERTIES CXX_EXTENSIONS OFF)
target_compile_options(${PROJECT_NAME} PRIVATE -Wall -Wextra)
target_compile_definitions(${PROJECT_NAME} PRIVATE DEVTOOLS DEV_LOCATION)


# Test
if(CMAKE_PROJECT_NAME STREQUAL PROJECT_NAME AND BUILD_TESTING)
	add_executable("${PROJECT_NAME}_unitTests" EXCLUDE_FROM_ALL)

	file(GLOB_RECURSE TEST_SOURCES CONFIGURE_DEPENDS tests/*)

	include(FetchContent)
	FetchContent_Declare(
												googletest
												GIT_REPOSITORY https://github.com/google/googletest.git
												GIT_TAG main
				)
	FetchContent_MakeAvailable(googletest)

	set(gtest_force_shared_crt ON CACHE BOOL "" FORCE)
	option(gtest_disable_pthreads "Disable uses of pthreads in gtest." ON)

	target_sources("${PROJECT_NAME}_unitTests" PRIVATE ${CORE_SOURCES} ${TEST_SOURCES})
	target_include_directories("${PROJECT_NAME}_unitTests" PRIVATE tests src)
	target_link_libraries("${PROJECT_NAME}_unitTests" PRIVATE coretools frozen ${ZLIB_LIBRARIES} ${ARMADILLO_LIBRARIES} gtest_main gmock_main Boost::timer ${RDKIT_LIBRARIES})
	target_compile_definitions("${PROJECT_NAME}_unitTests" PRIVATE CHECK_INTERVALS)
	target_compile_features(${PROJECT_NAME} PRIVATE cxx_std_20)
	set_target_properties(${PROJECT_NAME} PROPERTIES CXX_EXTENSIONS OFF)
	target_compile_options("${PROJECT_NAME}_unitTests" PRIVATE -Wall -Wextra)
endif()