-
Notifications
You must be signed in to change notification settings - Fork 306
Expand file tree
/
Copy pathheatmap.html
More file actions
244 lines (215 loc) · 10.9 KB
/
heatmap.html
File metadata and controls
244 lines (215 loc) · 10.9 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
<!DOCTYPE html>
<html lang="en">
<head>
<meta name="keywords" content="camicroscope, quip" />
<meta charset='utf-8'>
<meta http-equiv='X-UA-Compatible' content='IE=edge'>
<meta name='viewport' content='width=device-width, initial-scale=1.0, maximum-scale=2.0>
<title>caMicroscope</title>
<!-- google material icons css sheet -->
<link href="https://fonts.googleapis.com/css2?family=Material+Icons"
rel="stylesheet">
<!-- common css START -->
<link rel='stylesheet' type='text/css' media='all' href='../../css/style.css'/>
<!-- color picker css -->
<link rel='stylesheet' type='text/css' media='all' href='../../common/colorpicker/color-picker.css'/>
<!-- add pure-form css -->
<link rel='stylesheet' type='text/css' media='all' href='../../common/pureform/pure-form.css'/>
<link rel='stylesheet' type='text/css' media='all' href='../../common/rangeslider/rangeslider.css'/>
<!-- common css END -->
<!-- UI components css START -->
<!-- message display bar css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/camessage/camessage.css'/>
<!-- toolbar css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/toolbar/toolbar.css'/>
<!-- side menu css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/sidemenu/sidemenu.css'/>
<!-- layers controller css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/layersviewer/layersviewer.css'/>
<!-- collapsible list css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/collapsiblelist/collapsiblelist.css'/>
<!-- operation panel css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/operationpanel/operationpanel.css'/>
<!-- mult selector css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/multselector/multselector.css'/>
<!-- stylecontextmenu css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/simplecontextmenu/simplecontextmenu.css'/>
<!-- message queue css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/messagequeue/messagequeue.css'/>
<!-- loading cover css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/loading/loading.css'/>
<!-- popup panel css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/popuppanel/popuppanel.css'/>
<!-- add spyglass css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/spyglass/spyglass.css'/>
<!-- add heatmapcontrol css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/heatmapcontrol/heatmapcontrol.css'/>
<!-- add heatmapeditorpanel css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/heatmapeditorpanel/heatmapeditorpanel.css'/>
<!-- add heatmapediteddatapanel css -->
<link rel='stylesheet' type='text/css' media='all' href='../../components/heatmapediteddatapanel/heatmapediteddatapanel.css'/>
<!-- UI components css END -->
<!-- osd & core css START -->
<!-- zoom control css -->
<link rel='stylesheet' type='text/css' media='all' href='../../core/extension/openseadragon-zoom-control/openseadragon-zoom-control.css'/>
<!-- mesurement tool css -->
<link rel='stylesheet' type='text/css' media='all' href='../../core/extension/openseadragon-measurement-tool/openseadragon-measurement-tool.css'/>
<!-- osd & core css END -->
<!-- REMOVE JQUERY AND AJAX AFTER MODENRIZING DICOM PACKAGE-->
<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.1.0/jquery.min.js"></script>
<!-- Thank you -->
<!-- Check If we're logged in ok, otherwise, log in for us -->
<script src='../../common/authChecker.js'></script>
<script>
__auth_check(2)
</script>
<!-- common js START -->
<!-- util.js -->
<script src='../../common/util.js'></script>
<script src='../../common/DrawHelper.js'></script>
<script src='../../common/simplify.js'></script>
<script src='../../common/paths.js'></script>
<script src='../../common/touchMe.js'></script>
<!-- add pure-form script -->
<script src='../../common/pureform/document-register-element.js'></script>
<script src='../../common/pureform/pure-form.js'></script>
<!-- color picker js -->
<script src='../../common/colorpicker/color-picker.js'></script>
<!-- sortable js -->
<script src='../../common/sortable/Sortable.js'></script>
<script src='../../common/rangeslider/rangeslider.js'></script>
<script src='../../common/ajv.js'></script>
<!-- IDB helper -->
<script src='../../common/idb.js'></script>
<script src='../../common/heatmapeditdatamodels.js'></script>
<!-- common js END -->
<!-- components js START -->
<!-- message display js -->
<script src='../../components/camessage/camessage.js'></script>
<!-- toolbar js -->
<script src='../../components/toolbar/toolbar.js'></script>
<!-- sidemenu js -->
<script src='../../components/sidemenu/sidemenu.js'></script>
<!-- collapsible list js -->
<script src='../../components/collapsiblelist/collapsiblelist.js'></script>
<!-- layers controller js -->
<script src='../../components/layersviewer/layersviewer.js'></script>
<!-- operation panel js -->
<script src='../../components/operationpanel/operationpanel.js'></script>
<!-- loading cover js -->
<script src='../../components/loading/loading.js'></script>
<!-- stylecontextmenu js -->
<script src='../../components/simplecontextmenu/simplecontextmenu.js'></script>
<!-- popup panel js -->
<script src='../../components/popuppanel/popuppanel.js'></script>
<!-- message queue js -->
<script src='../../components/messagequeue/messagequeue.js'></script>
<!-- mult selector js -->
<script src='../../components/multselector/multselector.js'></script>
<!-- spyglass -->
<script src='../../components/spyglass/spyglass.js'></script>
<!-- heatmap control -->
<script src='../../components/heatmapcontrol/heatmapcontrol.js'></script>
<script src='../../components/heatmapeditorpanel/heatmapeditorpanel.js'></script>
<script src='../../components/heatmapediteddatapanel/heatmapediteddatapanel.js'></script>
<!-- components js END -->
<!-- osd & core js START -->
<script src='../../core/openseadragon/openseadragon.js' ></script>
<script src='../../core/openseadragon-imaginghelper.min.js'></script>
<script src='../../core/openseadragon-scalebar.js'></script>
<script src='../../core/openseadragonzoomlevels.js'></script>
<!-- core (package/ext) libs -->
<script src='../../core/StatesHelper.js'></script>
<script src='../../core/Validation.js'></script>
<script src='../../core/Store.js'></script>
<script src='../../core/CaMic.js'></script>
<script src='../../core/extension/openseadragon-canvas-draw-overlay.js'></script>
<script src='../../core/extension/openseadragon-overlays-manage.js'></script>
<script src='../../core/extension/openseadragon-measurement-tool/openseadragon-measurement-tool.js'></script>
<script src='../../core/extension/osd-heatmap-overlay.js'></script>
<script src='../../core/extension/openseadragon-zoom-control/openseadragon-zoom-control.js'></script>
<!-- business js -->
<script src='../../common/PathdbMods.js'></script>
<script src='../../common/LocalStore.js'></script>
<script src='../../common/NanoBorbMods.js'></script>
<script src='../../common/dynamicLoadScript.js'></script>
<script src='./uicallbacks.js'></script>
<!-- <script src='./dataloaders.js'></script> -->
<script src='./init.js'></script>
<!-- Popper & tippy -->
<script src="https://unpkg.com/@popperjs/core@2"></script>
<script src="https://unpkg.com/tippy.js@6"></script>
<!-- Smartpen -->
<script src="../../common/enhance.js"></script>
<script src="../../common/smartpen/autoalign.js"></script>
<link rel="stylesheet" type="text/css" media="all" href="../../common/smartpen/autoalign.css"/>
<!-- Smartpen end -->
</head>
<body>
<!-- message-->
<div id='cames' style='z-index:600'></div>
<!-- toolbar -->
<div id='ca_tools'></div>
<!-- main viewer -->
<div id='main_viewer' class='main'></div>
<div id='minor_viewer' class='none'></div>
<!-- settings menu for apps-->
<div id='settings_menu' style='z-index:600'></div>
<!-- editor menu for apps-->
<div id='editor_menu' style='z-index:600'></div>
<!-- edit data menu for apps-->
<div id='edit_list_menu' style='z-index:600'></div>
<!-- side menu for layers-->
<!-- <div id='side_layers' style='z-index:600'></div> -->
<!-- collapsible list - annotation and analytics -->
<!-- <div id='collapsiblelist' style='z-index:600'></div> -->
<!-- overlayer manager -->
<!-- <div id='overlayers' style='z-index:600'></div> -->
<script >
//Loading.open(document.body, 'CaMicroscope is initializing...');
// get slide id from url
if(detectIE()){
createWarningText('You are using an <strong>IE/Edge</strong> browser that may be lead to erratic behavior on caMicroscope. Please switch to <a href="https://www.google.com/chrome/">Chrome</a>, <a href="https://www.mozilla.org/en-US/firefox/new/">Firefox</a> or <a href="https://www.apple.com/safari/">Safari</a> browser to improve your experience.');
}
$D.params = getUrlVars();
// load if we have at least one slide query element
if($D.params && $D.params.slideId && $D.params.execId){
// normal initialization starts
document.addEventListener('DOMContentLoaded', initialize);
}
else if(!$D.params.execId){
redirect($D.pages.table,'ExecId Is Undefined. Redirecting To Table.');
}
else if ($D.params && ($D.params.slide || $D.params.specimen ||$D.params.study || $D.params.location)){
let STORE = new Store()
STORE.findSlide($D.params.slide, $D.params.study, $D.params.specimen, $D.params.location).then(x=>{
let offset = parseInt($D.params.offset,10) || 0;
if(x.length == 0 || offset >= x.length){
redirect($D.pages.table,'No Slide Found. Redirecting To Table.');
} else {
newParams = $D.params
delete newParams.data
delete newParams.slide
delete newParams.location
delete newParams.offset
newParams.slideId = x[offset]['_id']['$oid']
newUrl = window.location.href.split("?")[0] + "?" + objToParamStr(newParams)
window.location.href = newUrl
}
}).catch(e=>{
console.warn(e)
redirect($D.pages.table,'Redirecting To Table.');
})
// find the associated slideID
// open viewer with that slideID
}
else {
redirect($D.pages.table,'Slide Is Undefined. Redirecting To Table.');
}
// get states parameters
if($D.params.states){
$D.params.states = StatesHelper.decodeStates($D.params.states);
}
</script>
</body>
</html>