1. modify deprecated stuff

soran-ghaderi · soran-ghaderi · commit 3926ad779d88 · 2022-04-20T02:13:38.000+04:30
diff --git a/.coveragerc b/.coveragerc
@@ -1,2 +1,2 @@
 [run]
-source=bigraph
+source=emgraph
diff --git a/License.txt b/License.txt
@@ -5,7 +5,7 @@ EmGraph is distributed with the 3-clause BSD license.
 
 ::
 
-   Copyright (C) 2019-2021, BiGraph Developers
+   Copyright (C) 2019-2021, EmGraph Developers
    Soran Ghaderi <soran.gdr.cs@gmail.com>
    Taleb Zarhesh <taleb.zarhesh@gmail.com>
    All rights reserved.
@@ -22,7 +22,7 @@ EmGraph is distributed with the 3-clause BSD license.
        disclaimer in the documentation and/or other materials provided
        with the distribution.
 
-     * Neither the name of the BiGraph Developers nor the names of its
+     * Neither the name of the EmGraph Developers nor the names of its
        contributors may be used to endorse or promote products derived
        from this software without specific prior written permission.
 
diff --git a/README.md b/README.md
@@ -171,65 +171,6 @@ if __name__ == '__main__':
 
 [//]: # (<p>Metrics that are calculated during evaluation:</p>)
 
-[//]: # ()
-[//]: # (<div>)
-
-[//]: # (<table>)
-
-[//]: # (<caption><b>Metrics table</b></caption>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td><b>Number</b></td>)
-
-[//]: # (        <td align="center"><b>Evaluattion metrics</b></td>)
-
-[//]: # (    </tr>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td align="center">1</td>)
-
-[//]: # (        <td><code>Precision</code></td>)
-
-[//]: # (    </tr>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td align="center">2</td>)
-
-[//]: # (        <td><code>AUC</code></td>)
-
-[//]: # (    </tr>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td align="center">3</td>)
-
-[//]: # (        <td><code>ROC</code></td>)
-
-[//]: # (    </tr>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td align="center">4</td>)
-
-[//]: # (        <td><code>returns fpr*</code></td>)
-
-[//]: # (    </tr>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td align="center">5</td>)
-
-[//]: # (        <td><code>returns tpr*</code></td>)
-
-[//]: # (    </tr>)
-
-[//]: # (</table>)
-
-[//]: # (</div>)
-
 [//]: # ()
 [//]: # (> * For further usages and calculating different metrics)
 
@@ -238,98 +179,6 @@ if __name__ == '__main__':
 
 [//]: # (<p>Your dataset should be in the following format &#40;Exclude the 'Row' column&#41;:</p>)
 
-[//]: # ()
-[//]: # (<div>)
-
-[//]: # (<table>)
-
-[//]: # (<caption><b>Sample edges &#40;links&#41; dataset</b></caption>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td><b>Row</b></td>)
-
-[//]: # (        <td align="center"><b>left_side</b></td>)
-
-[//]: # (        <td align="center"><b>right_side</b></td>)
-
-[//]: # (        <td align="center"><b>Weight*</b></td>)
-
-[//]: # (    </tr>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td align="center">1</td>)
-
-[//]: # (        <td><code>u0</code></td>)
-
-[//]: # (        <td><code>v1</code></td>)
-
-[//]: # (        <td>1</td>)
-
-[//]: # (    </tr>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td align="center">2</td>)
-
-[//]: # (        <td><code>u2</code></td>)
-
-[//]: # (        <td><code>v1</code></td>)
-
-[//]: # (        <td>1</td>)
-
-[//]: # (    </tr>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td align="center">3</td>)
-
-[//]: # (        <td><code>u1</code></td>)
-
-[//]: # (        <td><code>v2</code></td>)
-
-[//]: # (        <td>1</td>)
-
-[//]: # (    </tr>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td align="center">4</td>)
-
-[//]: # (        <td><code>u3</code></td>)
-
-[//]: # (        <td><code>v3</code></td>)
-
-[//]: # (        <td>1</td>)
-
-[//]: # (    </tr>)
-
-[//]: # (    <tr>)
-
-[//]: # (        <td align="center">5</td>)
-
-[//]: # (        <td><code>u4</code></td>)
-
-[//]: # (        <td><code>v3</code></td>)
-
-[//]: # (        <td>2</td>)
-
-[//]: # (    </tr>)
-
-[//]: # (</table>)
-
-[//]: # (</div>)
-
-[//]: # ()
-[//]: # (> * Note that running <pre>)
-
-[//]: # (    <code>from bigraph.preprocessing import import_files df, df_nodes = import_files&#40;&#41;</code></pre>will create a sample graph for you and will place it in the)
-
-[//]: # (    <code>inputs</code> directory.)
-
-[//]: # (> * Although the weight has not been involved in current version, but, the format will be the same.)
-
 <h3>More examples</h3>
 <p>Embedding wordnet11 graph using 
 <code><b>DistMult</b></code> model:</p>
diff --git a/emgraph/__init__.py b/emgraph/__init__.py
@@ -1,4 +1,4 @@
-# Copyright (C) 2017-2022 Bigraph developers
+# Copyright (C) 2017-2022 Emgraph developers
 # Author: Soran Ghadri
 # Contact: soran.gdr.cs@gmail.com
 
diff --git a/emgraph/evaluation/__init__.py b/emgraph/evaluation/__init__.py
@@ -1,4 +1,4 @@
-# Copyright (C) 2017-2021 Bigraph developers
+# Copyright (C) 2017-2022 Emgraph developers
 # Author: Soran Ghadri
 # Contact: soran.gdr.cs@gmail.com
 
diff --git a/setup.py b/setup.py
@@ -13,7 +13,7 @@
 here = os.path.abspath(os.path.dirname(__file__))
 
 NAME = "Emgraph"
-DESCRIPTION = "Bigraph is a Python toolkit for graph embedding and link prediction."
+DESCRIPTION = "Emgraph is a Python toolkit for graph embedding."
 
 PLATFORMS = ["Linux", "Mac OSX", "Windows", "Unix"]
 VERSION = get_version()
@@ -22,7 +22,7 @@
     "Taleb": ("Taleb Zarhesh", "taleb.zarhesh@gmail.com"),
 }
 
-MAINTAINER = "BiGraph Developers"
+MAINTAINER = "Emgraph Developers"
 MAINTAINER_EMAIL = "soran.gdr.cs@gmail.com"
 
 KEYWORDS = [
@@ -96,7 +96,7 @@ def parse_requirements_file(filename):
     keywords=KEYWORDS,
     platforms=PLATFORMS,
     long_description_content_type="text/markdown",
-    url="https://github.com/bi-graph/bigraph",
+    url="https://github.com/bi-graph/emgraph",
     packages=find_packages(exclude=('tests', 'docs', 'html', 'requirements')),
     install_requires=requirements,
     extras_require=extras_require,
diff --git a/tests/emgraph/unit/tests.py b/tests/emgraph/unit/tests.py
diff --git a/tests/emgraph/utils/test_model_utils.py b/tests/emgraph/utils/test_model_utils.py
@@ -3,17 +3,17 @@
 import numpy as np
 import pandas as pd
 import numpy.testing as npt
-from bigraph.utils import save_model, restore_model, create_tensorboard_visualizations, \
+from emgraph.utils import save_model, restore_model, create_tensorboard_visualizations, \
     write_metadata_tsv, dataframe_to_triples
-from bigraph.latent_features import TransE
+from emgraph.models import TransE
 import pytest
 
 
 def test_save_and_restore_model():
     models = ('ComplEx', 'TransE', 'DistMult')
 
     for model_name in models:
-        module = importlib.import_module("emgraph.latent_features.models")
+        module = importlib.import_module("emgraph.models.models")
 
         print('Doing save/restore testing for model class: ', model_name)
 
diff --git a/tests/utils/test_model_utils.py b/tests/utils/test_model_utils.py
@@ -13,7 +13,7 @@ def test_save_and_restore_model():
     models = ('ComplEx', 'TransE', 'DistMult')
 
     for model_name in models:
-        module = importlib.import_module("emgraph.latent_features.models")
+        module = importlib.import_module("emgraph.models.models")
 
         print('Doing save/restore testing for model class: ', model_name)
 

Original file line number	Diff line number	Diff line change
`@@ -1,2 +1,2 @@`
`1`	`1`	`[run]`
`2`		`-source=bigraph`
	`2`	`+source=emgraph`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-# Copyright (C) 2017-2022 Bigraph developers`
	`1`	`+# Copyright (C) 2017-2022 Emgraph developers`
`2`	`2`	`# Author: Soran Ghadri`
`3`	`3`	`# Contact: soran.gdr.cs@gmail.com`
`4`	`4`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-# Copyright (C) 2017-2021 Bigraph developers`
	`1`	`+# Copyright (C) 2017-2022 Emgraph developers`
`2`	`2`	`# Author: Soran Ghadri`
`3`	`3`	`# Contact: soran.gdr.cs@gmail.com`
`4`	`4`