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2.3.8 (2019-09-16)

Bugfixes:

  • bug in fetching mm10 ensembl gene annotations (issue #37), thanks @sambhav2mishra

2.3.7 (2019-09-01)

Bugfixes:

  • bug in ciRNA annotating

2.3.6 (2019-03-19)

Improvements: Adding -f option in parse step to count fragment numbers rather than read numbers.

2.3.5 (2018-12-30)

Improvements: Using the temporary file to allow to run CIRCexplorer2 in the same directory simultaneously (issue #26). Thanks @egaffo. Happy New Year!

2.3.4 (2018-10-26)

Bugfixes:

  • bug in fetch_ucsc.py when using python3, thanks @lardenoije

2.3.3 (2018-02-27)

Bugfixes:

  • bug in fetch_ucsc.py when using python3 (issue #17)

2.3.2 (2017-10-05)

Improvements:

  • more safe way to trim the last comma of ref file, thanks @Tong-Chen (issue #14)

2.3.1 (2017-10-03)

Bugfixes:

  • bug in fast_circ.py

2.3.0 (2017-09-01)

Improvements:

  • reorganize inputs and outputs
  • add alternative back-splicing analysis
  • support Python 3

Bugfixes:

  • bug in align step

2.2.7 (2017-07-20)

Bugfixes:

  • fix a display error in assemble step
  • fix a bug with "--low-confidence" option in annotate step

2.2.6 (2016-09-25)

Bugfixes:

  • bug in building bowtie1/2 index using multiple threads
  • bug in parsing Drosophila circRNAs

2.2.5 (2016-09-17)

Improvements:

  • let fetch_ucsc.py support mm9

2.2.4 (2016-09-02)

Bugfixes:

  • fix a bug in align module

2.2.3 (2016-08-19)

Bugfixes:

  • fix a bug in align module

2.2.2 (2016-08-16)

Improvements:

  • update logic of annotate step
  • update build index module

2.2.1 (2016-08-08)

Improvements:

  • chang option '-p' to '--pe' in parse module
  • add 'fast_circ.py'

Bugfixes:

  • bug in align module because of parse module

2.2.0 (2016-08-04)

Improvements:

  • add paired-end data parsing function

2.1.2 (2016-07-22)

Improvements:

  • add '--low-confidence' option

2.1.1 (2016-07-20)

Bugfixes:

  • bug that ignores case-sensitivity in fusion fix step

Improvements:

  • improve fusion junction identification efficiency for BWA

2.1.0 (2016-07-04)

Improvements:

  • support for BWA

Bugfixes:

  • change module name from 'circ' to 'circ2' in case of conflict with CIRCexplorer (issue #1)

2.0.1 (2016-06-21)

Improvements:

  • test on PyPI and Bioconda
  • lots of code improvements

2.0.0 (2016-04-05)

Features:

  • pre-release for CIRCexplorer2