.gitignore

# Ignore images folder in download data module as nd2 files are too large
**/images*

# Ignore max-projected images since it would be too large
**/max_projected_images*

# Ignore illumination corrected images due to large size
**/IC_corrected_images*

# Ignore processed features due to large size
**/data*

# Ignore QC results as these are intermediate files
**/qc_results*

# Ignore SQLite outputs from CP analysis due to large size
**/analysis_output*

# Ignore python related files/folders
**/__pycache__/**

# Ignore log files since those are created during runs
**/logs*

# Ignore CytoTable logs
**/runinfo*

# Ignore any folder called "old" as it contains previous runs that can be used for comparisons
**/old*

# Ignore any "in-progress" work folder that is not ready for sharing
**/in_progress*