xbio/NAMESPACE at main · WangLabCSU/xbio · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
# Generated by roxygen2: do not edit by hand

S3method("$",xbio_genesets)
S3method("[",xbio_genesets)
S3method("[[",xbio_genesets)
S3method("length<-",xbio_genesets)
S3method("names<-",xbio_genesets)
S3method(as.character,xbio_geneset)
S3method(as.data.frame,xbio_genesets)
S3method(as.list,xbio_genesets)
S3method(geneset,GeneSet)
S3method(geneset,character)
S3method(geneset,default)
S3method(genesets,OrgDb)
S3method(genesets,character)
S3method(genesets,data.frame)
S3method(genesets,default)
S3method(genesets,list)
S3method(genesets,xbio_genesets)
S3method(genesets,xbio_kegg_genesets)
S3method(gs_biomart,xbio_geneset)
S3method(gs_biomart,xbio_genesets)
S3method(gs_clean,xbio_geneset)
S3method(gs_clean,xbio_genesets)
S3method(gs_descs,xbio_geneset)
S3method(gs_descs,xbio_genesets)
S3method(gs_ids,xbio_geneset)
S3method(gs_ids,xbio_genesets)
S3method(gs_map,xbio_geneset)
S3method(gs_map,xbio_genesets)
S3method(gs_terms,xbio_geneset)
S3method(gs_terms,xbio_genesets)
S3method(names,xbio_genesets)
S3method(obj_print_data,xbio_genesets)
S3method(obj_print_header,xbio_geneset)
S3method(obj_print_header,xbio_genesets)
S3method(rep,xbio_genesets)
S3method(repr_matrix,Seurat)
S3method(repr_matrix,SingleCellExperiment)
S3method(repr_matrix,SummarizedExperiment)
S3method(repr_matrix,default)
S3method(repr_matrix,dgCMatrix)
S3method(repr_matrix,matrix)
S3method(repr_metrics,character)
S3method(repr_metrics,data.frame)
S3method(repr_metrics,default)
S3method(repr_metrics,numeric)
S3method(repr_metrics,xbio_metrics)
S3method(vec_cast,GeneSet.xbio_geneset)
S3method(vec_cast,character.xbio_geneset)
S3method(vec_cast,data.frame.xbio_genesets)
S3method(vec_cast,list.xbio_genesets)
S3method(vec_cast,xbio_geneset.GeneSet)
S3method(vec_cast,xbio_geneset.character)
S3method(vec_cast,xbio_genesets.data.frame)
S3method(vec_cast,xbio_genesets.list)
S3method(vec_cast,xbio_genesets.xbio_genesets)
S3method(vec_cast,xbio_genesets.xbio_kegg_genesets)
S3method(vec_math,xbio_genesets)
S3method(vec_ptype2,GeneSet.NULL)
S3method(vec_ptype2,NULL.GeneSet)
S3method(vec_ptype2,NULL.xbio_geneset)
S3method(vec_ptype2,NULL.xbio_genesets)
S3method(vec_ptype2,character.xbio_geneset)
S3method(vec_ptype2,data.frame.xbio_genesets)
S3method(vec_ptype2,list.xbio_genesets)
S3method(vec_ptype2,xbio_geneset.NULL)
S3method(vec_ptype2,xbio_geneset.character)
S3method(vec_ptype2,xbio_genesets.NULL)
S3method(vec_ptype2,xbio_genesets.data.frame)
S3method(vec_ptype2,xbio_genesets.list)
S3method(vec_ptype2,xbio_genesets.xbio_genesets)
S3method(vec_ptype2,xbio_genesets.xbio_kegg_genesets)
S3method(vec_ptype2,xbio_kegg_genesets.xbio_genesets)
S3method(vec_ptype_abbr,xbio_geneset)
S3method(vec_ptype_abbr,xbio_genesets)
export(GSEABroadGene)
export(GSEAGene)
export(GSEAMultilevel)
export(GSEASimple)
export(annohub)
export(bridge)
export(geneset)
export(genesets)
export(gs_biomart)
export(gs_clean)
export(gs_descs)
export(gs_filter)
export(gs_ids)
export(gs_map)
export(gs_terms)
export(kegg_genesets)
export(keggdb)
export(repr_genesets)
export(repr_matrix)
export(repr_metrics)
export(xbio)
import(S7)
import(vctrs)
importFrom(S7,class_double)
importFrom(S7,new_property)
importFrom(rlang,abort)
importFrom(rlang,arg_match0)
importFrom(rlang,caller_arg)
importFrom(rlang,caller_call)
importFrom(rlang,caller_env)
importFrom(rlang,ffi_standalone_check_number_1.0.7)
importFrom(rlang,ffi_standalone_is_bool_1.0.7)
importFrom(rlang,is_missing)
importFrom(rlang,is_string)
importFrom(rlang,is_vector)
importFrom(rlang,set_names)
useDynLib(xbio, .registration = TRUE)