diff --git a/README.md b/README.md index 2148721..cbf69ed 100644 --- a/README.md +++ b/README.md @@ -84,22 +84,9 @@ partinet star \ --conf 0.1 ``` -## Key Parameters - -### Detection -- `--backbone-detector`: Choice of neural network architecture -- `--weight`: Path to model weights -- `--conf-thres`: Detection confidence threshold -- `--iou-thres`: Overlap filtering threshold -- `--device`: GPU device selection - -### STAR Generation -- `--conf`: Confidence threshold for particle filtering -- `--output`: Path for final STAR file - ## Output Files -1. **Denoised Micrographs** (`denoised/*.mrc`) +1. **Denoised Micrographs** (`denoised/*.png`) - Cleaned micrographs with improved SNR 2. **Detection Results** (`exp/`) @@ -122,9 +109,8 @@ Available commands: - `denoise`: Clean input micrographs - `detect`: Identify particles - `star`: Generate STAR files -- `train`: Train custom models (step1/step2) -- `test`: Evaluate model performance - +- `train`: Train custom models +- ## Troubleshooting - **GPU Issues**