From 3b6c2187772049a573b7f949d9cd26bc41793c6a Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Tue, 17 Feb 2026 10:28:18 +0000 Subject: [PATCH 01/10] Added contact for PRJNA670487: Sylvain Raffaele --- .../contacts/allContacts.xml | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 8f7e022c..4c4d8324 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -15,6 +15,30 @@ + + sylvain.raffaele + Sylvain Raffaele + LIPME, INRAE, CNRS + sylvain.raffaele@inrae.fr +
28 chemin de borde rouge
+ Castanet tolosan + + 31320 + France + + + + stefan.kusch + Stefan Kusch + Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University + +
+ Aachen + + + Germany + + d.perets D. Perets From 204724425befa576f9627ceaf0de7080228d71ef Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Tue, 17 Feb 2026 11:55:12 +0000 Subject: [PATCH 02/10] Removed (First author) contact from allContacts.xml - Contact not referenced in PRJNA670487 presenter - Maintaining only sylvain.raffaele for this dataset --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 4c4d8324..15b23841 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -27,17 +27,6 @@ France - - stefan.kusch - Stefan Kusch - Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University - -
- Aachen - - - Germany - d.perets From e3fbed4a0910cae3078597e189fd0da8a1fbec69 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 26 Feb 2026 14:44:37 +0000 Subject: [PATCH 03/10] Updated contact for PRJNA670487: Sylvain Raffaele --- Model/lib/xml/datasetPresenters/contacts/allContacts.xml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 15b23841..4d48ab13 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -18,9 +18,9 @@ sylvain.raffaele Sylvain Raffaele - LIPME, INRAE, CNRS + Laboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France sylvain.raffaele@inrae.fr -
28 chemin de borde rouge
+
Castanet tolosan 31320 From 99015e86f1a2f7594eced710cbf3621b8c9d8549 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 30 Mar 2026 11:30:49 +0100 Subject: [PATCH 04/10] Add contacts for Botrytis cinerea (PRJNA915611) RNA-seq dataset. - Added contact Xuncheng Wang, 1706380435@pku.edu.cn, Peking Universit, Beijing, Chin for PRJNA915611 --- .../contacts/allContacts.xml | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 4d48ab13..0f95be51 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40774,4 +40774,28 @@ Academy of Sciences + + xuncheng.wang + Xuncheng Wang + Peking University + 1706380435@pku.edu.cn +
+ Beijing + + + China + + + + mei.liu + Mei Liu + Peking University + +
+ Beijing + + + China + + From e9ae8c9cd5ee99c70c7d81fcfc08b5e1e1dabcad Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 30 Mar 2026 12:32:14 +0100 Subject: [PATCH 05/10] Add Nathalie Poussereau contact for Botrytis cinerea RNA-seq (PRJNA1104610) dataset. - Dataset: PacC transcription factor pH-responsive gene regulation study - PMID: 39385086 - Organism: Botrytis cinerea B05.10 - Added nathalie.poussereau contact to allContacts.xml - Email: nathalie.poussereau@univ-lyon1.fr --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 0f95be51..ab4b7036 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40798,4 +40798,16 @@ Academy of Sciences China + + nathalie.poussereau + Nathalie Poussereau + Université Claude Bernard Lyon 1, INSA Lyon, Bayer SAS, MAP, UMR5240, Villeurbanne, France + nathalie.poussereau@univ-lyon1.fr +
+ Villeurbanne + + 69100 + France + + From b966aeb02ce2676e7e76239989573c31ff05522a Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 09:57:11 +0100 Subject: [PATCH 06/10] Remove Nathalie Poussereau contact for PRJNA1104610 --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index ab4b7036..745da5e8 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40798,16 +40798,5 @@ Academy of Sciences China - - nathalie.poussereau - Nathalie Poussereau - Université Claude Bernard Lyon 1, INSA Lyon, Bayer SAS, MAP, UMR5240, Villeurbanne, France - nathalie.poussereau@univ-lyon1.fr -
- Villeurbanne - - 69100 - France - From 122939566ded6dad4c8d87ed865da112b367f793 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 10:50:20 +0100 Subject: [PATCH 07/10] Add Tsutomu Arie contact for Fusarium oxysporum (PRJNA662919) RNA-seq dataset. - Dataset: Morphological differentiation transcriptomics - PMID: 34108627 - Organism: Fusarium oxysporum isolate Cong:1-1 - Added Tsutomu Arie, arie@cc.tuat.ac.jp, Osaka Prefecture University, Japan --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 745da5e8..3890b454 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40798,5 +40798,16 @@ Academy of Sciences China + + tsutomu.arie + Tsutomu Arie + Osaka Prefecture University + +
+ + + + Japan + From ff5c105022f5aa966807e3b1e51bfe682befe710 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 14:53:31 +0100 Subject: [PATCH 08/10] =?UTF-8?q?Add=20Silvia=20Restrepo=20contact=20for?= =?UTF-8?q?=20Fusarium=20oxysporum=20(PRJNA323849,=20GSE82060)=20RNA-seq?= =?UTF-8?q?=20dataset.=20-=20Dataset:=20Antifungal=20drug=20response=20tra?= =?UTF-8?q?nscriptomics=20(GSE82060)=20-=20Organism:=20Fusarium=20oxysporu?= =?UTF-8?q?m=20strain=20FMR9788=20-=20Added=20silvia.restrepo=20contact=20?= =?UTF-8?q?to=20allContacts.xml=20-=20Email:=20srestrep@uniandes.edu.co=20?= =?UTF-8?q?-=20Affiliation:=20LAMFU=20Lab,=20Department=20of=20Biology,=20?= =?UTF-8?q?Universidad=20de=20los=20Andes,=20Bogot=C3=A1,=20Colombia?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 3890b454..26b698b3 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40810,4 +40810,16 @@ Academy of Sciences Japan + + silvia.restrepo + Silvia Restrepo + Department of Biology, LAMFU Lab, Universidad de los Andes, Bogotá, Colombia + srestrep@uniandes.edu.co +
+ Bogotá + + + Colombia + + From 4d9840d97f36a7996f0cfd33305a2ba10a437dfb Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 15:35:04 +0100 Subject: [PATCH 09/10] Add Shanxi Agricultural University contact for Fusarium oxysporum (PRJNA374476) RNA-seq dataset. - Dataset: Wild-type vs DES mutagenesis mutant transcriptome - Organism: Fusarium oxysporum - Added Shanxi Agricultural University (SAU) contact to allContacts.xml - Institution: Shanxi Agricultural University --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 26b698b3..0e3103ac 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40822,4 +40822,16 @@ Academy of Sciences Colombia + + Shanxi Agricultural University (SAU) + Shanxi Agricultural University (SAU) + Shanxi Agricultural University + +
+ Taigu + + + China + + From 748ff01f3a126a4e8d8b1dc6711a38262ef0b1de Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 17:47:20 +0100 Subject: [PATCH 10/10] Add Javier Avalos contact for Fusarium oxysporum (PRJNA419820, GSE107342) RNA-seq dataset. - Dataset: CarS and light response transcriptomics - Organism: Fusarium oxysporum f. sp. lycopersici - Added j.avalos contact to allContacts.xml - Email: (Department of Genetics, Faculty of Biology, University of Seville, Spain) --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 0e3103ac..bbecb7bb 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40834,4 +40834,16 @@ Academy of Sciences China + + j.avalos + Javier Avalos + Department of Genetics, Faculty of Biology, University of Seville, E-41012 Seville, Spain + +
+ Seville + + 41012 + Spain + +