Merge pull request #26 from VACLab/detach-before-attach-duckdb

detaching duckdb before attaching it

Author: hyi

biasanalyzer/database.py

@@ -56,6 +56,11 @@ def _initialize(self, db_url, omop_db_url=None):
                             ATTACH '{self.omop_cdm_db_url}' as {self.omop_alias} (TYPE postgres)
                             """)
             elif omop_db_url.endswith(".duckdb"):
+                try:
+                    self.conn.execute(f"DETACH DATABASE {self.omop_alias}")
+                except (duckdb.BinderException, duckdb.CatalogException):
+                    # ignore if not attached yet
+                    pass
                 self.conn.execute(f"""
                             ATTACH '{self.omop_cdm_db_url}' as {self.omop_alias}
                             """)