CUBIC_nprot/NatureProtocols_step3-2.txt at master · SystemsResearch/CUBIC_nprot · GitHub

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###################################################
## Parameters for step 3-2 of the CUBIC Analysis ##
###################################################
#
#
# Note: to avoid any problem, please do not
#        change the file structure, only the
#        parameter values
#
#
###########
# Folders #
###########
#
# Folder containing the NIfTI files
/Users/perrin2/Desktop/CUBIC/nii_individual/
#
# Folder containing the registration files
/Users/perrin2/Desktop/CUBIC/ascii/
#
# Folder containing the merged files
/Users/perrin2/Desktop/CUBIC/nii_merged/
#
# Folder containing the registration files
/Users/perrin2/Desktop/CUBIC/registration/
#
#
#
##########
# Brains #
##########
#
# List of brain IDs
001,002,003
#
# Number of sagittal slices
640
#
# Number of coronal slices
540
#
# Number of horizontal slices for each of these brains
169,157,169
#
#
#
###########
# Merging #
###########
#
# n values (staining)
88,78,83
#
# m values (staining)
91,82,87
#
# n values (fluorescent signal)
90,79,68
#
# m values (fluorescent signal)
101,86,92
#
#
#
############
# Log file #
############
#
# Name of the log file (including full path)
/Users/perrin2/Desktop/CUBIC/logs/log_NatureProtocols_step3-2.txt
#
#
#
#########
## END ##
#########