deepinterpolation.yml

name: Testing deepinterpolation

# Manual only — deepinterpolation requires Python 3.10, incompatible with 3.11+ required by Zarr 3.0.0+
on:
  workflow_dispatch:

concurrency:  # Cancel previous workflows on the same pull request
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  build-and-test:
    name: Test on ${{ matrix.os }} OS
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: ["ubuntu-latest"]
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v5
        with:
          python-version: '3.10'
      - name: Get changed files
        id: changed-files
        uses: tj-actions/changed-files@v46.0.1
      - name: Deepinteprolation changes
        id: modules-changed
        run: |
          for file in ${{ steps.changed-files.outputs.all_changed_files }}; do
            if [[ $file == *"/deepinterpolation/"* ]]; then
              echo "DeepInterpolation changed"
              echo "DEEPINTERPOLATION_CHANGED=true" >> $GITHUB_OUTPUT
            fi
          done
      - name: Install dependencies
        if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }}
        run: |
          python -m pip install -U pip  # Official recommended way
          # install deepinteprolation
          pip install tensorflow==2.8.4
          pip install deepinterpolation@git+https://github.com/AllenInstitute/deepinterpolation.git
          pip install numpy==1.26.4
          pip install -e .[full,test_core]
      - name: Pip list
        if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }}
        run: |
          pip list
      - name: Test DeepInterpolation with pytest
        if: ${{ steps.modules-changed.outputs.DEEPINTERPOLATION_CHANGED == 'true' }}
        run: |
          pytest -v src/spikeinterface/preprocessing/deepinterpolation
        shell: bash  # Necessary for pipeline to work on windows