Merge pull request #6 from SparseLinearAlgebra/dev

feat: add graph representation, csv reader

Author: VanyaGlazunov

.github/workflows/ci.yml

@@ -19,10 +19,32 @@ jobs:
           - nightly
     steps:
       - uses: actions/checkout@v4
+        with:
+          submodules: recursive
+
       - name: Install system dependencies
         run: |
           sudo apt-get update
-          sudo apt-get install -y libssl-dev pkg-config libsuitesparse-dev
-      - run: rustup update ${{ matrix.toolchain }} && rustup default ${{ matrix.toolchain }}
-      - run: cargo build --verbose
-      - run: cargo test --verbose
+          sudo apt-get install -y cmake libclang-dev clang
+
+      - name: Build and install SuiteSparse:GraphBLAS
+        run: |
+          git clone --depth 1 https://github.com/DrTimothyAldenDavis/GraphBLAS.git
+          cd GraphBLAS
+          make compact
+          sudo make install
+
+      - name: Build and install LAGraph
+        run: |
+          cd deps/LAGraph
+          make
+          sudo make install
+
+      - name: Install Rust toolchain
+        run: rustup update ${{ matrix.toolchain }} && rustup default ${{ matrix.toolchain }}
+
+      - name: Build (with regenerated bindings)
+        run: cargo build --features regenerate-bindings --verbose
+
+      - name: Test
+        run: LD_LIBRARY_PATH=/usr/local/lib cargo test --verbose

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "deps/LAGraph"]
+	path = deps/LAGraph
+	url = https://github.com/SparseLinearAlgebra/LAGraph.git

Cargo.toml

@@ -4,3 +4,14 @@ version = "0.1.0"
 edition = "2024"
 
 [dependencies]
+csv = "1.4.0"
+libc = "0.2"
+oxrdf = "0.3.3"
+oxttl = "0.2.3"
+thiserror = "1.0"
+
+[features]
+regenerate-bindings = ["bindgen"]
+
+[build-dependencies]
+bindgen = { version = "0.71", optional = true }

build.rs

@@ -0,0 +1,99 @@
+#[cfg(feature = "regenerate-bindings")]
+use std::path::PathBuf;
+
+fn main() {
+    println!("cargo:rustc-link-lib=dylib=graphblas");
+    println!("cargo:rustc-link-search=native=/usr/local/lib");
+    println!("cargo:rustc-link-lib=dylib=lagraph");
+    println!("cargo:rustc-link-search=native=deps/LAGraph/build/src");
+    println!("cargo:rustc-link-lib=dylib=lagraphx");
+    println!("cargo:rustc-link-search=native=deps/LAGraph/build/experimental");
+
+    // ---- Bindgen (only with `regenerate-bindings` feature) ----
+    #[cfg(feature = "regenerate-bindings")]
+    regenerate_bindings();
+
+    println!("cargo:rerun-if-changed=build.rs");
+}
+
+#[cfg(feature = "regenerate-bindings")]
+fn regenerate_bindings() {
+    let manifest_dir = PathBuf::from(env!("CARGO_MANIFEST_DIR"));
+
+    let lagraph_include = manifest_dir.join("deps/LAGraph/include");
+    assert!(
+        lagraph_include.join("LAGraph.h").exists(),
+        "LAGraph.h not found at {}.\n\
+         Fetch the submodule:\n  git submodule update --init --recursive",
+        lagraph_include.display()
+    );
+
+    let graphblas_include = [
+        PathBuf::from("/usr/local/include/suitesparse"),
+        PathBuf::from("/usr/include/suitesparse"),
+    ]
+    .into_iter()
+    .find(|p| p.join("GraphBLAS.h").exists())
+    .unwrap_or_else(|| {
+        panic!(
+            "GraphBLAS.h not found.\n\
+             Install SuiteSparse:GraphBLAS so headers are in /usr/local/include/suitesparse."
+        )
+    });
+
+    let bindings = bindgen::Builder::default()
+        .header(
+            lagraph_include
+                .join("LAGraph.h")
+                .to_str()
+                .expect("non-utf8 header path"),
+        )
+        .header(
+            lagraph_include
+                .join("LAGraphX.h")
+                .to_str()
+                .expect("non-utf8 header path"),
+        )
+        .clang_arg(format!("-I{}", graphblas_include.display()))
+        .clang_arg(format!("-I{}", lagraph_include.display()))
+        .allowlist_type("GrB_Index")
+        .allowlist_type("GrB_Matrix")
+        .allowlist_type("GrB_Vector")
+        .allowlist_item("GrB_BOOL")
+        .allowlist_item("GrB_LOR")
+        .allowlist_item("GrB_LOR_LAND_SEMIRING_BOOL")
+        .allowlist_item("GrB_Info")
+        .allowlist_function("GrB_Matrix_new")
+        .allowlist_function("GrB_Matrix_nvals")
+        .allowlist_function("GrB_Matrix_free")
+        .allowlist_function("GrB_Matrix_build_BOOL")
+        .allowlist_function("GrB_Vector_new")
+        .allowlist_function("GrB_Vector_free")
+        .allowlist_function("GrB_Vector_setElement_BOOL")
+        .allowlist_function("GrB_Vector_nvals")
+        .allowlist_function("GrB_Vector_extractTuples_BOOL")
+        .allowlist_function("GrB_vxm")
+        .allowlist_type("LAGraph_Graph")
+        .allowlist_type("LAGraph_Kind")
+        .allowlist_function("LAGraph_Init")
+        .allowlist_function("LAGraph_Finalize")
+        .allowlist_function("LAGraph_New")
+        .allowlist_function("LAGraph_Delete")
+        .allowlist_function("LAGraph_Cached_AT")
+        .allowlist_function("LAGraph_MMRead")
+        .default_enum_style(bindgen::EnumVariation::Rust {
+            non_exhaustive: false,
+        })
+        .derive_debug(true)
+        .derive_copy(true)
+        .layout_tests(false)
+        // Suppress C-language doc comments so rustdoc does not attempt to
+        // compile them as Rust doctests.
+        .generate_comments(false)
+        .generate()
+        .expect("bindgen failed to generate bindings");
+
+    bindings
+        .write_to_file(manifest_dir.join("src/lagraph_sys_generated.rs"))
+        .expect("failed to write bindgen output to src/lagraph_sys_generated.rs");
+}