SingleR/DESCRIPTION at master · SingleR-inc/SingleR · GitHub

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Package: SingleR
Title: Reference-Based Single-Cell RNA-Seq Annotation
Version: 2.13.5
Date: 2026-04-09
Authors@R: c(person("Dvir", "Aran", email="dvir.aran@ucsf.edu", role=c("aut", "cph")),
    person("Aaron", "Lun", email="infinite.monkeys.with.keyboards@gmail.com", role=c("ctb", "cre")),
    person("Daniel", "Bunis", role="ctb"),
    person("Jared", "Andrews", email = "jared.andrews07@gmail.com", role="ctb"),
    person("Friederike", "Dündar", email = "frd2007@med.cornell.edu", role="ctb"))
Description: Performs unbiased cell type recognition from single-cell RNA
    sequencing data, by leveraging reference transcriptomic datasets of pure cell
    types to infer the cell of origin of each single cell independently.
License: GPL-3
Depends: SummarizedExperiment
Imports:
    methods,
    Matrix,
    BiocGenerics,
    S4Vectors,
    DelayedArray,
    stats,
    utils,
    Rcpp,
    beachmat (>= 2.27.3)
LinkingTo:
    Rcpp,
    beachmat,
    assorthead (>= 1.3.5)
Suggests:
    testthat,
    knitr,
    rmarkdown,
    BiocStyle,
    BiocParallel,
    SingleCellExperiment,
    scrapper (>= 1.5.16),
    scRNAseq,
    ggplot2,
    pheatmap,
    grDevices,
    gridExtra,
    viridis,
    celldex
biocViews:
    Software,
    SingleCell,
    GeneExpression,
    Transcriptomics,
    Classification,
    Clustering,
    Annotation
SystemRequirements: C++17
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.3
URL: https://github.com/SingleR-inc/SingleR
BugReports: https://github.com/SingleR-inc/SingleR/issues