index.md

SEMS Project List

• BiVeS [source] [documentation]
  The BiVeS framework
  • BiVeS-Core [source] [documentation]
    The core of BiVeS
  • BiVeS-WS [source] [documentation]
    The BiVeS web service
  • BiVeS-WS-Client [source] [documentation]
    JAVA client library for the BiVeS web service
  • BiVeS-SBML [source] [documentation]
    the SBML module of BiVeS
  • BiVeS-CellML [source] [documentation]
    the CellML module of BiVeS
  • BudHat [source] [documentation]
    Showcase for the BiVeS framework
  • XMLUtils [source] [documentation]
    a Java library to ease the daily work on XML documents
• CombineArchive [source] [documentation]
  library to read/write/create/manipulate/... CombineArchives
• CombineArchiveShowCase [source]
  Showcase showing an fully featured CombineArchive
• CombineArchiveWeb [source] [documentation] [webCat]
  Web interface to create/modify/share CombineArchives
• CombineExt [source] [documentation]
  usefull tools, when working with COMBINE standards
  • CombineExt-PharmMl [source] [documentation]
    Example on how to extend CombineExt with the PharmMl standard
• COMODI [source] [web-page] [wiki]
  ontology because COmputational MOdels DIffer
  • jCOMODI [source] [documentation]
    java api for COMODI
• M2CAT [source] [documentation]
  Web based tool to export reproducible research results
• MaSyMoS-Core [source] [documentation]
  Graph-Database for SystemsBiology models
  • MaSyMoS-CLI [source]
    Collection of main classes to interact with MaSyMoS on the command line
  • MaSyMoS-Morre [source]
    REST interface for MaSyMoS. Allows to search/retrieve as well as push models to the database
  • MaSyMoS-Morre-client [source] [documentation]
    Java library to access the MaSyMoS-Morre REST api
  • MaSyMoS-Docker [source] [Docker Hub]
    Fully featured Docker image of MaSyMoS, including Rank Aggregation and Diff/Multi-Version support
• ModelCrawler [source] [documentation]
  Tool to crawl all models from BioModels Database and PMR2/CellML model repository
• MOST [source] [documentation] [website]
  ModelStatistics showing the evolution of biological models from BioModels Database and the CellML Model Repository

Feel free to contact us. Also refer to our Maven repository for the latest builds.