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SamoraHunterSamoraHunter
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stripped output manually
1 parent d474de4 commit e30229f

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Lines changed: 18 additions & 219 deletions

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‎notebooks/Untitled.ipynb‎

Lines changed: 18 additions & 219 deletions
Original file line numberDiff line numberDiff line change
@@ -2,8 +2,8 @@
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"cells": [
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{
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"cell_type": "code",
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"execution_count": 9,
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"id": "3a5ff52e",
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"execution_count": null,
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"id": "0",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -107,115 +107,10 @@
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},
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{
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"cell_type": "code",
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"execution_count": 23,
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"id": "f034aae3",
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"metadata": {
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"scrolled": false
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},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"hit Hemochromatosis (disorder) count_subject_present\n",
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"hit Bronze cirrhosis (disorder) count_subject_present\n",
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"hit Bronze diabetes (disorder) count_subject_present\n",
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"hit Hereditary hemochromatosis (disorder) count_subject_present\n",
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"hit Autosomal dominant hereditary hemochromatosis (disorder) count_subject_present\n",
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"hit 1186847009 count_subject_present\n",
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"hit Hemochromatosis type 3 (disorder) count_subject_present\n",
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"hit Juvenile hemochromatosis (disorder) count_subject_present\n",
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"hit 1186849007 count_subject_present\n",
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"hit 1186844002 count_subject_present\n",
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"hit Idiopathic hemochromatosis (disorder) count_subject_present\n",
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"hit Neonatal hemochromatosis (disorder) count_subject_present\n",
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"hit Primary hemochromatosis (disorder) count_subject_present\n",
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"hit Secondary hemochromatosis (disorder) count_subject_present\n",
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"hit African nutritional hemochromatosis (disorder) count_subject_present\n",
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"hit Erythropoietic hemochromatosis (disorder) count_subject_present\n",
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"hit Hemochromatosis following repeated red blood cell transfusion (disorder) count_subject_present\n",
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"hit Homozygous For The C . 845G A P . Cys282Tyr Variant count_subject_present\n",
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"hit Hfe Ph63D Heterozygous Normal Variant count_subject_present\n",
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"hit Homozygous For Haemochromatosis Gene Mutation count_subject_present\n",
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"hit Homozygous For The C . 845G A P . Cys282Tyr Variant count_subject_present\n",
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"hit Homozygous For The C2828Y Mutation Of The Hfe Gene count_subject_present\n",
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"hit Hfe Ph63D Heterozygous Normal Variant count_subject_present\n",
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"hit Homozygous For The H63D Mutation count_subject_present\n",
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"hit This Patient Is A Carrier For The Mutation In The Hfe Gene At Position 282 C Y This Patient Is A Carrier For The Mutation In The Hfe Gene At Position 63 H D count_subject_present\n",
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"hit Homozygous For Haemochromatosis Gene Mutation count_subject_present\n",
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"hit Heterozygous For The Haemochromatosis Gene count_subject_present\n",
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"hit Haemochromatosis gene screening test (observable entity) count_subject_present\n",
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"hit Carrier of hemochromatosis (finding) count_subject_present\n",
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"hit Hemochromatosis gene screening test (procedure) count_subject_present\n",
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"hit Iron overload (disorder) count_subject_present\n",
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"hit Family history of hemochromatosis (situation) count_subject_present\n",
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"Hemochromatosis (disorder)_count_subject_not_present\n",
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"Hemochromatosis (disorder)_count_relative_not_present\n",
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"Bronze cirrhosis (disorder)_count_subject_not_present\n",
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"Bronze cirrhosis (disorder)_count_relative_not_present\n",
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"Bronze diabetes (disorder)_count_subject_not_present\n",
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"Bronze diabetes (disorder)_count_relative_not_present\n",
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"Hereditary hemochromatosis (disorder)_count_subject_not_present\n",
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"Hereditary hemochromatosis (disorder)_count_relative_not_present\n",
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"Autosomal dominant hereditary hemochromatosis (disorder)_count_subject_not_present\n",
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"Autosomal dominant hereditary hemochromatosis (disorder)_count_relative_not_present\n",
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"1186847009_count_subject_not_present\n",
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"1186847009_count_relative_not_present\n",
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"Hemochromatosis type 3 (disorder)_count_subject_not_present\n",
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"Hemochromatosis type 3 (disorder)_count_relative_not_present\n",
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"Juvenile hemochromatosis (disorder)_count_subject_not_present\n",
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"Juvenile hemochromatosis (disorder)_count_relative_not_present\n",
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"1186849007_count_subject_not_present\n",
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"1186849007_count_relative_not_present\n",
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"1186844002_count_subject_not_present\n",
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"1186844002_count_relative_not_present\n",
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"Idiopathic hemochromatosis (disorder)_count_subject_not_present\n",
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"Idiopathic hemochromatosis (disorder)_count_relative_not_present\n",
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"Neonatal hemochromatosis (disorder)_count_subject_not_present\n",
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"Neonatal hemochromatosis (disorder)_count_relative_not_present\n",
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"Primary hemochromatosis (disorder)_count_subject_not_present\n",
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"Primary hemochromatosis (disorder)_count_relative_not_present\n",
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"Secondary hemochromatosis (disorder)_count_subject_not_present\n",
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"Secondary hemochromatosis (disorder)_count_relative_not_present\n",
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"African nutritional hemochromatosis (disorder)_count_subject_not_present\n",
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"African nutritional hemochromatosis (disorder)_count_relative_not_present\n",
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"Erythropoietic hemochromatosis (disorder)_count_subject_not_present\n",
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"Erythropoietic hemochromatosis (disorder)_count_relative_not_present\n",
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"Hemochromatosis following repeated red blood cell transfusion (disorder)_count_subject_not_present\n",
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"Hemochromatosis following repeated red blood cell transfusion (disorder)_count_relative_not_present\n",
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"Homozygous For The C . 845G A P . Cys282Tyr Variant_count_subject_not_present\n",
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"Homozygous For The C . 845G A P . Cys282Tyr Variant_count_relative_not_present\n",
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"Hfe Ph63D Heterozygous Normal Variant_count_subject_not_present\n",
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"Hfe Ph63D Heterozygous Normal Variant_count_relative_not_present\n",
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"Homozygous For Haemochromatosis Gene Mutation_count_subject_not_present\n",
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"Homozygous For Haemochromatosis Gene Mutation_count_relative_not_present\n",
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"Homozygous For The C . 845G A P . Cys282Tyr Variant_count_subject_not_present\n",
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"Homozygous For The C . 845G A P . Cys282Tyr Variant_count_relative_not_present\n",
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"Homozygous For The C2828Y Mutation Of The Hfe Gene_count_subject_not_present\n",
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"Homozygous For The C2828Y Mutation Of The Hfe Gene_count_relative_not_present\n",
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"Hfe Ph63D Heterozygous Normal Variant_count_subject_not_present\n",
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"Hfe Ph63D Heterozygous Normal Variant_count_relative_not_present\n",
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"Homozygous For The H63D Mutation_count_subject_not_present\n",
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"Homozygous For The H63D Mutation_count_relative_not_present\n",
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"This Patient Is A Carrier For The Mutation In The Hfe Gene At Position 282 C Y This Patient Is A Carrier For The Mutation In The Hfe Gene At Position 63 H D_count_subject_not_present\n",
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"This Patient Is A Carrier For The Mutation In The Hfe Gene At Position 282 C Y This Patient Is A Carrier For The Mutation In The Hfe Gene At Position 63 H D_count_relative_not_present\n",
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"Homozygous For Haemochromatosis Gene Mutation_count_subject_not_present\n",
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"Homozygous For Haemochromatosis Gene Mutation_count_relative_not_present\n",
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"Heterozygous For The Haemochromatosis Gene_count_subject_not_present\n",
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"Heterozygous For The Haemochromatosis Gene_count_relative_not_present\n",
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"Haemochromatosis gene screening test (observable entity)_count_subject_not_present\n",
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"Haemochromatosis gene screening test (observable entity)_count_relative_not_present\n",
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"Carrier of hemochromatosis (finding)_count_subject_not_present\n",
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"Carrier of hemochromatosis (finding)_count_relative_not_present\n",
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"Hemochromatosis gene screening test (procedure)_count_subject_not_present\n",
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"Hemochromatosis gene screening test (procedure)_count_relative_not_present\n",
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"Iron overload (disorder)_count_subject_not_present\n",
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"Iron overload (disorder)_count_relative_not_present\n",
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"Family history of hemochromatosis (situation)_count_subject_not_present\n",
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"Family history of hemochromatosis (situation)_count_relative_not_present\n"
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]
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}
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],
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"execution_count": null,
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"id": "1",
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"metadata": {},
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"outputs": [],
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"source": [
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"def add_not_present_strings(input_list):\n",
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" result_list = []\n",
@@ -252,29 +147,18 @@
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},
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{
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"cell_type": "code",
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"execution_count": 17,
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"id": "acabb4fb",
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"execution_count": null,
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"id": "2",
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"[]"
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]
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},
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"execution_count": 17,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"outputs": [],
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"source": [
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"result"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 7,
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"id": "e5738017",
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"execution_count": null,
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"id": "3",
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"metadata": {},
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"outputs": [],
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"source": [
@@ -283,113 +167,28 @@
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},
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{
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"cell_type": "code",
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"execution_count": 8,
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"id": "1cec846d",
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"execution_count": null,
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"id": "4",
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"('Hemochromatosis (disorder)', 'count')"
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]
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},
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"execution_count": 8,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"outputs": [],
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"source": [
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"prefix, suffix"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 24,
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"id": "8a2ace44",
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"execution_count": null,
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"id": "5",
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
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"['Hemochromatosis (disorder)_count_subject_not_present',\n",
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" 'Hemochromatosis (disorder)_count_relative_not_present',\n",
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" 'Bronze cirrhosis (disorder)_count_subject_not_present',\n",
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" 'Bronze cirrhosis (disorder)_count_relative_not_present',\n",
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" 'Bronze diabetes (disorder)_count_subject_not_present',\n",
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" 'Bronze diabetes (disorder)_count_relative_not_present',\n",
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" 'Hereditary hemochromatosis (disorder)_count_subject_not_present',\n",
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" 'Hereditary hemochromatosis (disorder)_count_relative_not_present',\n",
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" 'Autosomal dominant hereditary hemochromatosis (disorder)_count_subject_not_present',\n",
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" 'Autosomal dominant hereditary hemochromatosis (disorder)_count_relative_not_present',\n",
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" '1186847009_count_subject_not_present',\n",
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" '1186847009_count_relative_not_present',\n",
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" 'Hemochromatosis type 3 (disorder)_count_subject_not_present',\n",
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" 'Hemochromatosis type 3 (disorder)_count_relative_not_present',\n",
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" 'Juvenile hemochromatosis (disorder)_count_subject_not_present',\n",
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" 'Juvenile hemochromatosis (disorder)_count_relative_not_present',\n",
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" '1186849007_count_subject_not_present',\n",
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" '1186849007_count_relative_not_present',\n",
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" '1186844002_count_subject_not_present',\n",
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" '1186844002_count_relative_not_present',\n",
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" 'Idiopathic hemochromatosis (disorder)_count_subject_not_present',\n",
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" 'Idiopathic hemochromatosis (disorder)_count_relative_not_present',\n",
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" 'Neonatal hemochromatosis (disorder)_count_subject_not_present',\n",
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" 'Neonatal hemochromatosis (disorder)_count_relative_not_present',\n",
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" 'Primary hemochromatosis (disorder)_count_subject_not_present',\n",
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" 'Primary hemochromatosis (disorder)_count_relative_not_present',\n",
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" 'Secondary hemochromatosis (disorder)_count_subject_not_present',\n",
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" 'Secondary hemochromatosis (disorder)_count_relative_not_present',\n",
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" 'African nutritional hemochromatosis (disorder)_count_subject_not_present',\n",
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" 'African nutritional hemochromatosis (disorder)_count_relative_not_present',\n",
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" 'Erythropoietic hemochromatosis (disorder)_count_subject_not_present',\n",
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" 'Erythropoietic hemochromatosis (disorder)_count_relative_not_present',\n",
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" 'Hemochromatosis following repeated red blood cell transfusion (disorder)_count_subject_not_present',\n",
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" 'Hemochromatosis following repeated red blood cell transfusion (disorder)_count_relative_not_present',\n",
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" 'Homozygous For The C . 845G A P . Cys282Tyr Variant_count_subject_not_present',\n",
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" 'Homozygous For The C . 845G A P . Cys282Tyr Variant_count_relative_not_present',\n",
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" 'Hfe Ph63D Heterozygous Normal Variant_count_subject_not_present',\n",
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" 'Hfe Ph63D Heterozygous Normal Variant_count_relative_not_present',\n",
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" 'Homozygous For Haemochromatosis Gene Mutation_count_subject_not_present',\n",
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" 'Homozygous For Haemochromatosis Gene Mutation_count_relative_not_present',\n",
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" 'Homozygous For The C . 845G A P . Cys282Tyr Variant_count_subject_not_present',\n",
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" 'Homozygous For The C . 845G A P . Cys282Tyr Variant_count_relative_not_present',\n",
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" 'Homozygous For The C2828Y Mutation Of The Hfe Gene_count_subject_not_present',\n",
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" 'Homozygous For The C2828Y Mutation Of The Hfe Gene_count_relative_not_present',\n",
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" 'Hfe Ph63D Heterozygous Normal Variant_count_subject_not_present',\n",
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" 'Hfe Ph63D Heterozygous Normal Variant_count_relative_not_present',\n",
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" 'Homozygous For The H63D Mutation_count_subject_not_present',\n",
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" 'Homozygous For The H63D Mutation_count_relative_not_present',\n",
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" 'This Patient Is A Carrier For The Mutation In The Hfe Gene At Position 282 C Y This Patient Is A Carrier For The Mutation In The Hfe Gene At Position 63 H D_count_subject_not_present',\n",
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" 'This Patient Is A Carrier For The Mutation In The Hfe Gene At Position 282 C Y This Patient Is A Carrier For The Mutation In The Hfe Gene At Position 63 H D_count_relative_not_present',\n",
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" 'Homozygous For Haemochromatosis Gene Mutation_count_subject_not_present',\n",
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" 'Homozygous For Haemochromatosis Gene Mutation_count_relative_not_present',\n",
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" 'Heterozygous For The Haemochromatosis Gene_count_subject_not_present',\n",
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" 'Heterozygous For The Haemochromatosis Gene_count_relative_not_present',\n",
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" 'Haemochromatosis gene screening test (observable entity)_count_subject_not_present',\n",
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" 'Haemochromatosis gene screening test (observable entity)_count_relative_not_present',\n",
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" 'Carrier of hemochromatosis (finding)_count_subject_not_present',\n",
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" 'Carrier of hemochromatosis (finding)_count_relative_not_present',\n",
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" 'Hemochromatosis gene screening test (procedure)_count_subject_not_present',\n",
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" 'Hemochromatosis gene screening test (procedure)_count_relative_not_present',\n",
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" 'Iron overload (disorder)_count_subject_not_present',\n",
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" 'Iron overload (disorder)_count_relative_not_present',\n",
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" 'Family history of hemochromatosis (situation)_count_subject_not_present',\n",
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" 'Family history of hemochromatosis (situation)_count_relative_not_present']"
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]
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},
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"execution_count": 24,
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"outputs": [],
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"source": [
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"result"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "156971d5",
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"id": "6",
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"metadata": {},
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"outputs": [],
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"source": []

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