From 6c952d3d5de9a9d7302365dddf08c551294878af Mon Sep 17 00:00:00 2001 From: Jeremy Stein Date: Wed, 18 Feb 2026 17:53:03 +0000 Subject: [PATCH 1/2] Update stale lock file --- uv.lock | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/uv.lock b/uv.lock index 45339cb..70aa0f2 100644 --- a/uv.lock +++ b/uv.lock @@ -2074,6 +2074,15 @@ wheels = [ { url = "https://files.pythonhosted.org/packages/00/c0/8f5d070730d7836adc9c9b6408dec68c6ced86b304a9b26a14df072a6e8c/traitlets-5.14.3-py3-none-any.whl", hash = "sha256:b74e89e397b1ed28cc831db7aea759ba6640cb3de13090ca145426688ff1ac4f", size = 85359 }, ] +[[package]] +name = "types-pika-ts" +version = "1.3.0.20250914" +source = { registry = "https://pypi.org/simple" } +sdist = { url = "https://files.pythonhosted.org/packages/ea/97/5ff23d9bf737fb7ab374c8e63e0f02634477d69badce96faf1f716843c6d/types_pika_ts-1.3.0.20250914.tar.gz", hash = "sha256:3e1bac6f1b3b17a9b51f88b529c718bf40f964905029aa10fc17a49f9eada1e6", size = 23853 } +wheels = [ + { url = "https://files.pythonhosted.org/packages/e0/9b/c23c8435d42f7d431d137ed42af85acd729ecb20fcf02d31a028b37f97fa/types_pika_ts-1.3.0.20250914-py3-none-any.whl", hash = "sha256:c4b9dfc25350a6135de5714518e4b831b37c3fb3625e4ebb4c61181a916b6f02", size = 31507 }, +] + [[package]] name = "types-psycopg2" version = "2.9.21.20251012" @@ -2142,6 +2151,7 @@ dependencies = [ dev = [ { name = "pytest" }, { name = "stablehash" }, + { name = "types-pika-ts" }, { name = "types-psycopg2" }, ] @@ -2156,6 +2166,7 @@ requires-dist = [ { name = "requests", specifier = "==2.32.3" }, { name = "snakemake", specifier = "==9.14.5" }, { name = "stablehash", marker = "extra == 'dev'", specifier = "==0.3.0" }, + { name = "types-pika-ts", marker = "extra == 'dev'" }, { name = "types-psycopg2", marker = "extra == 'dev'" }, ] From b2e59dad291126677725d66d84f29a4b0119b2e1 Mon Sep 17 00:00:00 2001 From: Jeremy Stein Date: Wed, 18 Feb 2026 17:54:07 +0000 Subject: [PATCH 2/2] Pin to same version of "requests" as PIXL. --- pyproject.toml | 2 +- uv.lock | 10 +++++----- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 46e4e64..f7a9762 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12,7 +12,7 @@ dependencies = [ "snakemake==9.14.5", # need to be compatible with PIXL, which currently pins 2.9.10 (arguably it shouldn't) "psycopg2-binary>=2.9.10", - "requests==2.32.3", + "requests==2.32.4", # trick for making a "relative" path, works inside or outside container image "core @ file:///${PROJECT_ROOT}/../PIXL/pixl_core", ] diff --git a/uv.lock b/uv.lock index 70aa0f2..ff7d921 100644 --- a/uv.lock +++ b/uv.lock @@ -429,7 +429,7 @@ requires-dist = [ { name = "python-decouple", specifier = "==3.8" }, { name = "python-slugify", specifier = "==8.0.4" }, { name = "pyyaml", specifier = "==6.0.2" }, - { name = "requests", specifier = "==2.32.3" }, + { name = "requests", specifier = "==2.32.4" }, { name = "sqlalchemy", specifier = "==2.0.36" }, { name = "token-bucket", specifier = "==0.3.0" }, { name = "xnat", specifier = "==0.6.2" }, @@ -1691,7 +1691,7 @@ wheels = [ [[package]] name = "requests" -version = "2.32.3" +version = "2.32.4" source = { registry = "https://pypi.org/simple" } dependencies = [ { name = "certifi" }, @@ -1699,9 +1699,9 @@ dependencies = [ { name = "idna" }, { name = "urllib3" }, ] -sdist = { url = "https://files.pythonhosted.org/packages/63/70/2bf7780ad2d390a8d301ad0b550f1581eadbd9a20f896afe06353c2a2913/requests-2.32.3.tar.gz", hash = "sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760", size = 131218 } +sdist = { url = "https://files.pythonhosted.org/packages/e1/0a/929373653770d8a0d7ea76c37de6e41f11eb07559b103b1c02cafb3f7cf8/requests-2.32.4.tar.gz", hash = "sha256:27d0316682c8a29834d3264820024b62a36942083d52caf2f14c0591336d3422", size = 135258 } wheels = [ - { url = "https://files.pythonhosted.org/packages/f9/9b/335f9764261e915ed497fcdeb11df5dfd6f7bf257d4a6a2a686d80da4d54/requests-2.32.3-py3-none-any.whl", hash = "sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6", size = 64928 }, + { url = "https://files.pythonhosted.org/packages/7c/e4/56027c4a6b4ae70ca9de302488c5ca95ad4a39e190093d6c1a8ace08341b/requests-2.32.4-py3-none-any.whl", hash = "sha256:27babd3cda2a6d50b30443204ee89830707d396671944c998b5975b031ac2b2c", size = 64847 }, ] [[package]] @@ -2163,7 +2163,7 @@ requires-dist = [ { name = "pre-commit", specifier = ">=4.5.0" }, { name = "psycopg2-binary", specifier = ">=2.9.10" }, { name = "pytest", marker = "extra == 'dev'", specifier = ">=9.0.2" }, - { name = "requests", specifier = "==2.32.3" }, + { name = "requests", specifier = "==2.32.4" }, { name = "snakemake", specifier = "==9.14.5" }, { name = "stablehash", marker = "extra == 'dev'", specifier = "==0.3.0" }, { name = "types-pika-ts", marker = "extra == 'dev'" },