predate/commands-1.yaml at main · Rbfinch/predate · GitHub

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tests:
  test-1: "$GREPQ 16S-no-iupac.txt small.fastq"
  test-2: "$GREPQ 16S-no-iupac.txt small.fastq inverted"
  test-3: "$GREPQ -I 16S-no-iupac.txt small.fastq"
  test-4: "$GREPQ -I 16S-no-iupac.txt small.fastq inverted"
  test-5: "$GREPQ -R 16S-no-iupac.txt small.fastq"
  test-6: "$GREPQ -R 16S-no-iupac.txt small.fastq inverted"
  test-7: "$GREPQ -c 16S-no-iupac.txt small.fastq"
  test-8: "$GREPQ -c 16S-no-iupac.txt small.fastq inverted"
  test-9: "$GREPQ 16S-no-iupac.txt small.fastq tune -n 10000 -c"
  test-10: "$GREPQ -x 16S-no-iupac.json SRX26365298.fastq.gz tune -n 100000 -c --names --json-matches"

expected_sizes:
  test-1: 15953
  test-2: 736547
  test-3: 19515
  test-4: 901271
  test-5: 35574
  test-6: 1642712
  test-7: 53
  test-8: 2447
  test-9: 411
  test-10: 2689