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NAMESPACE
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86 lines (85 loc) · 2.53 KB
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# Generated by roxygen2: do not edit by hand
export(DEEPLEARNING_melt)
export(DEEPLEARNING_plot)
export(DEEPLEARNING_query)
export(DEEPLEARNING_query_multi_chr)
export(DEEPLEARNING_query_one_chr)
export(IMPACT_compute_enrichment)
export(IMPACT_get_annotation_key)
export(IMPACT_get_annotations)
export(IMPACT_get_ldscores)
export(IMPACT_get_top_annotations)
export(IMPACT_heatmap)
export(IMPACT_iterate_enrichment)
export(IMPACT_iterate_get_annotations)
export(IMPACT_plot_enrichment)
export(IMPACT_plot_impact_score)
export(IMPACT_postprocess_annotations)
export(IMPACT_query)
export(IMPACT_snp_group_boxplot)
export(SPLICEAI_plot)
export(SPLICEAI_query_api)
export(SPLICEAI_query_tsv)
export(SPLICEAI_query_tsv_iterate)
export(SPLICEAI_query_vcf)
export(SPLICEAI_run)
export(SPLICEAI_snp_probs)
importFrom(data.table,":=")
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,melt.data.table)
importFrom(data.table,merge.data.table)
importFrom(data.table,rbindlist)
importFrom(downloadR,zenodo_upload)
importFrom(dplyr,any_of)
importFrom(dplyr,arrange)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_at)
importFrom(dplyr,n_distinct)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(dplyr,slice_head)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_at)
importFrom(dplyr,top_n)
importFrom(dplyr,vars)
importFrom(echodata,find_consensus_snps_no_polyfun)
importFrom(echodata,snp_group_colorDict)
importFrom(echodata,snp_group_filters)
importFrom(echotabix,construct_query)
importFrom(echotabix,convert)
importFrom(echotabix,query)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_col)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_viridis_c)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,ylim)
importFrom(parallel,mclapply)
importFrom(stats,as.formula)
importFrom(stats,median)
importFrom(stats,setNames)
importFrom(tidyr,replace_na)
importFrom(tidyr,separate)
importFrom(utils,combn)
importFrom(utils,data)