echoAI/DESCRIPTION at main · RajLabMSSM/echoAI · GitHub

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Package: echoAI
Type: Package
Title: Echoverse Module: AI/ML Variant-Level Predictions
Version: 0.99.0
Date: 2026-03-14
Authors@R:
    c(person(given = "Brian",
           family = "Schilder",
           role = c("aut","cre"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191")),
    person(given = "Jack",
           family = "Humphrey",
           role = c("aut"),
           email = "Jack.Humphrey@mssm.edu",
           comment = c(ORCID = "0000-0002-6274-6620")),
    person(given = "Towfique",
           family = "Raj",
           role = c("aut"),
           email = "towfique.raj@mssm.edu",
           comment = c(ORCID = "0000-0002-9355-5704"))
           )
Description: Echoverse module: API access to variant-level AI/ML predictions
    including IMPACT (immune cell TF binding), SpliceAI (splice site
    predictions), and deep learning annotations (Basenji, DeepSEA).
    Part of the echoverse suite for genomic fine-mapping.
URL: https://github.com/RajLabMSSM/echoAI
BugReports: https://github.com/RajLabMSSM/echoAI/issues
Encoding: UTF-8
Depends: R (>= 4.1)
biocViews: Software, Genetics, FunctionalGenomics, SystemsBiology
Imports:
    echotabix,
    echodata,
    downloadR,
    data.table,
    dplyr,
    stats,
    utils,
    methods,
    parallel,
    tidyr,
    ggplot2
Suggests:
    markdown,
    rmarkdown,
    remotes,
    knitr,
    BiocStyle,
    covr,
    testthat (>= 3.0.0),
    ggpubr,
    patchwork,
    ggrepel,
    ggridges,
    ComplexHeatmap,
    RColorBrewer,
    pals,
    shades,
    reshape2,
    stringr,
    R.utils,
    jsonlite
Remotes:
    github::RajLabMSSM/echodata,
    github::RajLabMSSM/echotabix,
    github::RajLabMSSM/downloadR
RoxygenNote: 7.3.3
VignetteBuilder: knitr
License: GPL-3
Config/testthat/edition: 3
LazyData: true