MSMetaEnhancer/.pre-commit-config.yaml at main · RECETOX/MSMetaEnhancer · GitHub

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exclude: '.*\.(csv|msp)$'
default_stages: [pre-commit]

default_language_version:
  python: python3.12

repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v5.0.0
    hooks:
      - id: trailing-whitespace
      - id: end-of-file-fixer
      - id: check-json
      - id: check-toml
      - id: check-xml
      - id: check-yaml
      - id: debug-statements
      - id: check-builtin-literals
      - id: check-case-conflict
      - id: check-docstring-first
      - id: detect-private-key

  # Ruff linter (primary linter)
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.4.4
    hooks:
      - id: ruff
        args: [--fix, --exit-non-zero-on-fix, .]

  # Flake8 (optional, for CI or legacy)
  - repo: https://github.com/pycqa/flake8
    rev: 7.0.0
    hooks:
      - id: flake8
        additional_dependencies: []
        args: [
          "--count",
          "--select=E9,F63,F7,F82",
          "--show-source",
          "--statistics"
        ]
      - id: flake8
        name: flake8 (warnings)
        additional_dependencies: []
        args: [
          "--count",
          "--exit-zero",
          "--max-complexity=10",
          "--max-line-length=127",
          "--statistics"
        ]