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modalities.py
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from abc import ABC
from dataclasses import dataclass
from typing import ClassVar
from jaxtyping import Bool, Float, Int
from torch import Tensor
__all__ = [
"LegacySurveyImage",
"HSCImage",
"DESISpectrum",
"SDSSSpectrum",
"LegacySurveyCatalog",
"LegacySurveySegmentationMap",
"LegacySurveyFluxG",
"LegacySurveyFluxR",
"LegacySurveyFluxI",
"LegacySurveyFluxZ",
"LegacySurveyFluxW1",
"LegacySurveyFluxW2",
"LegacySurveyFluxW3",
"LegacySurveyFluxW4",
"LegacySurveyShapeR",
"LegacySurveyShapeE1",
"LegacySurveyShapeE2",
"LegacySurveyEBV",
"Z",
"HSCAG",
"HSCAR",
"HSCAI",
"HSCAZ",
"HSCAY",
"HSCMagG",
"HSCMagR",
"HSCMagI",
"HSCMagZ",
"HSCMagY",
"HSCShape11",
"HSCShape22",
"HSCShape12",
"GaiaFluxG",
"GaiaFluxBp",
"GaiaFluxRp",
"GaiaParallax",
"Ra",
"Dec",
"GaiaXpBp",
"GaiaXpRp",
]
class Modality(ABC):
"""Base class for all modality data types."""
token_key: ClassVar[str] = ""
@dataclass
class Image(Modality):
"""Base class for image modality data.
This is an abstract base class. Use LegacySurveyImage or HSCImage instead.
"""
name: ClassVar[str] = "image"
flux: Float[Tensor, " batch num_bands height width"]
bands: list[str]
def __repr__(self) -> str:
repr_str = f"Image(flux_shape={list(self.flux.shape)}, bands={self.bands})"
return repr_str
class HSCImage(Image):
"""HSC image modality data."""
token_key: ClassVar[str] = "tok_image_hsc"
num_tokens: ClassVar[int] = 576
class LegacySurveyImage(Image):
"""Legacy Survey image modality data."""
token_key: ClassVar[str] = "tok_image"
num_tokens: ClassVar[int] = 576
@dataclass
class Spectrum(Modality):
"""Base class for spectrum modality data.
This is an abstract base class. Use DESISpectrum or SDSSSpectrum instead.
"""
name: ClassVar[str] = "spectrum"
flux: Float[Tensor, " batch length"]
ivar: Float[Tensor, " batch length"]
mask: Bool[Tensor, " batch length"]
wavelength: Float[Tensor, " batch length"]
pad_length: ClassVar[int]
def __repr__(self) -> str:
repr_str = (
f"Spectrum(flux_shape={list(self.flux.shape)}, "
f"wavelength_range=[{self.wavelength.min().item():.1f}, "
f"{self.wavelength.max().item():.1f}])"
)
return repr_str
class DESISpectrum(Spectrum):
"""DESI spectrum modality data."""
token_key: ClassVar[str] = "tok_spectrum_desi"
num_tokens: ClassVar[int] = 273
pad_length: ClassVar[int] = 7808
class SDSSSpectrum(Spectrum):
"""SDSS spectrum modality data."""
token_key: ClassVar[str] = "tok_spectrum_sdss"
num_tokens: ClassVar[int] = 273
pad_length: ClassVar[int] = 4800
# Catalog modality
@dataclass
class LegacySurveyCatalog(Modality):
"""Catalog modality data.
Represents a catalog of scalar values from the Legacy Survey.
"""
name: ClassVar[str] = "catalog"
X: Int[Tensor, " batch n"]
Y: Int[Tensor, " batch n"]
SHAPE_E1: Float[Tensor, " batch n"]
SHAPE_E2: Float[Tensor, " batch n"]
SHAPE_R: Float[Tensor, " batch n"]
token_key: ClassVar[str] = "catalog"
@dataclass
class LegacySurveySegmentationMap(Modality):
"""Legacy Survey segmentation map modality data.
Represents 2D segmentation maps built from Legacy Survey detections.
"""
name: ClassVar[str] = "segmentation_map"
field: Float[Tensor, " batch height width"]
token_key: ClassVar[str] = "tok_segmap"
def __repr__(self) -> str:
repr_str = f"{self.__class__.__name__}>(field_shape={list(self.field.shape)})"
return repr_str
@dataclass
class Scalar(Modality):
"""Base class for scalar modality data.
Represents a single scalar value per sample, typically used for
flux measurements, shape parameters, or other single-valued properties.
"""
value: Float[Tensor, "..."]
def __repr__(self) -> str:
return f"{self.__class__.__name__}(shape={list(self.value.shape)})"
# Flux measurements in different bands
class LegacySurveyFluxG(Scalar):
"""G-band flux measurement from Legacy Survey."""
name: ClassVar[str] = "FLUX_G"
token_key: ClassVar[str] = "tok_flux_g"
num_tokens: ClassVar[int] = 1
class LegacySurveyFluxR(Scalar):
"""R-band flux measurement."""
name: ClassVar[str] = "FLUX_R"
token_key: ClassVar[str] = "tok_flux_r"
num_tokens: ClassVar[int] = 1
class LegacySurveyFluxI(Scalar):
"""I-band flux measurement."""
name: ClassVar[str] = "FLUX_I"
token_key: ClassVar[str] = "tok_flux_i"
num_tokens: ClassVar[int] = 1
class LegacySurveyFluxZ(Scalar):
"""Z-band flux measurement."""
name: ClassVar[str] = "FLUX_Z"
token_key: ClassVar[str] = "tok_flux_z"
num_tokens: ClassVar[int] = 1
class LegacySurveyFluxW1(Scalar):
"""WISE W1-band flux measurement."""
name: ClassVar[str] = "FLUX_W1"
token_key: ClassVar[str] = "tok_flux_w1"
num_tokens: ClassVar[int] = 1
class LegacySurveyFluxW2(Scalar):
"""WISE W2-band flux measurement."""
name: ClassVar[str] = "FLUX_W2"
token_key: ClassVar[str] = "tok_flux_w2"
num_tokens: ClassVar[int] = 1
class LegacySurveyFluxW3(Scalar):
"""WISE W3-band flux measurement."""
name: ClassVar[str] = "FLUX_W3"
token_key: ClassVar[str] = "tok_flux_w3"
num_tokens: ClassVar[int] = 1
class LegacySurveyFluxW4(Scalar):
"""WISE W4-band flux measurement."""
name: ClassVar[str] = "FLUX_W4"
token_key: ClassVar[str] = "tok_flux_w4"
num_tokens: ClassVar[int] = 1
# Shape parameters
class LegacySurveyShapeR(Scalar):
"""R-band shape measurement (e.g., half-light radius)."""
name: ClassVar[str] = "SHAPE_R"
token_key: ClassVar[str] = "tok_shape_r"
num_tokens: ClassVar[int] = 1
class LegacySurveyShapeE1(Scalar):
"""First ellipticity component."""
name: ClassVar[str] = "SHAPE_E1"
token_key: ClassVar[str] = "tok_shape_e1"
num_tokens: ClassVar[int] = 1
class LegacySurveyShapeE2(Scalar):
"""Second ellipticity component."""
name: ClassVar[str] = "SHAPE_E2"
token_key: ClassVar[str] = "tok_shape_e2"
num_tokens: ClassVar[int] = 1
# Other scalar properties
class LegacySurveyEBV(Scalar):
"""E(B-V) extinction measurement."""
name: ClassVar[str] = "EBV"
token_key: ClassVar[str] = "tok_ebv"
num_tokens: ClassVar[int] = 1
# Spectroscopic redshift
class Z(Scalar):
"""Spectroscopic redshift measurement."""
name: ClassVar[str] = "Z"
token_key: ClassVar[str] = "tok_z"
num_tokens: ClassVar[int] = 1
# Extinction values from HSC
class HSCAG(Scalar):
"""HSC a_g extinction."""
name: ClassVar[str] = "a_g"
token_key: ClassVar[str] = "tok_a_g"
num_tokens: ClassVar[int] = 1
class HSCAR(Scalar):
"""HSC a_r extinction."""
name: ClassVar[str] = "a_r"
token_key: ClassVar[str] = "tok_a_r"
num_tokens: ClassVar[int] = 1
class HSCAI(Scalar):
"""HSC a_i extinction."""
name: ClassVar[str] = "a_i"
token_key: ClassVar[str] = "tok_a_i"
num_tokens: ClassVar[int] = 1
class HSCAZ(Scalar):
"""HSC a_z extinction."""
name: ClassVar[str] = "a_z"
token_key: ClassVar[str] = "tok_a_z"
num_tokens: ClassVar[int] = 1
class HSCAY(Scalar):
"""HSC a_y extinction."""
name: ClassVar[str] = "a_y"
token_key: ClassVar[str] = "tok_a_y"
num_tokens: ClassVar[int] = 1
class HSCMagG(Scalar):
"""HSC g-band cmodel magnitude."""
name: ClassVar[str] = "g_cmodel_mag"
token_key: ClassVar[str] = "tok_mag_g"
num_tokens: ClassVar[int] = 1
class HSCMagR(Scalar):
"""HSC r-band cmodel magnitude."""
name: ClassVar[str] = "r_cmodel_mag"
token_key: ClassVar[str] = "tok_mag_r"
num_tokens: ClassVar[int] = 1
class HSCMagI(Scalar):
"""HSC i-band cmodel magnitude."""
name: ClassVar[str] = "i_cmodel_mag"
token_key: ClassVar[str] = "tok_mag_i"
num_tokens: ClassVar[int] = 1
class HSCMagZ(Scalar):
"""HSC z-band cmodel magnitude."""
name: ClassVar[str] = "z_cmodel_mag"
token_key: ClassVar[str] = "tok_mag_z"
num_tokens: ClassVar[int] = 1
class HSCMagY(Scalar):
"""HSC y-band cmodel magnitude."""
name: ClassVar[str] = "y_cmodel_mag"
token_key: ClassVar[str] = "tok_mag_y"
num_tokens: ClassVar[int] = 1
class HSCShape11(Scalar):
"""HSC i-band SDSS shape 11 component."""
name: ClassVar[str] = "i_sdssshape_shape11"
token_key: ClassVar[str] = "tok_shape11"
num_tokens: ClassVar[int] = 1
class HSCShape22(Scalar):
"""HSC i-band SDSS shape 22 component."""
name: ClassVar[str] = "i_sdssshape_shape22"
token_key: ClassVar[str] = "tok_shape22"
num_tokens: ClassVar[int] = 1
class HSCShape12(Scalar):
"""HSC i-band SDSS shape 12 component."""
name: ClassVar[str] = "i_sdssshape_shape12"
token_key: ClassVar[str] = "tok_shape12"
num_tokens: ClassVar[int] = 1
# Gaia modalities
class GaiaFluxG(Scalar):
"""Gaia G-band mean flux."""
name: ClassVar[str] = "phot_g_mean_flux"
token_key: ClassVar[str] = "tok_flux_g_gaia"
num_tokens: ClassVar[int] = 1
class GaiaFluxBp(Scalar):
"""Gaia BP-band mean flux."""
name: ClassVar[str] = "phot_bp_mean_flux"
token_key: ClassVar[str] = "tok_flux_bp_gaia"
num_tokens: ClassVar[int] = 1
class GaiaFluxRp(Scalar):
"""Gaia RP-band mean flux."""
name: ClassVar[str] = "phot_rp_mean_flux"
token_key: ClassVar[str] = "tok_flux_rp_gaia"
num_tokens: ClassVar[int] = 1
class GaiaParallax(Scalar):
"""Gaia parallax measurement."""
name: ClassVar[str] = "parallax"
token_key: ClassVar[str] = "tok_parallax"
num_tokens: ClassVar[int] = 1
class Ra(Scalar):
"""Right ascension coordinate."""
name: ClassVar[str] = "ra"
token_key: ClassVar[str] = "tok_ra"
num_tokens: ClassVar[int] = 1
class Dec(Scalar):
"""Declination coordinate."""
name: ClassVar[str] = "dec"
token_key: ClassVar[str] = "tok_dec"
num_tokens: ClassVar[int] = 1
class GaiaXpBp(Scalar):
"""Gaia BP spectral coefficients."""
name: ClassVar[str] = "bp_coefficients"
token_key: ClassVar[str] = "tok_xp_bp"
num_tokens: ClassVar[int] = 55
class GaiaXpRp(Scalar):
"""Gaia RP spectral coefficients."""
name: ClassVar[str] = "rp_coefficients"
token_key: ClassVar[str] = "tok_xp_rp"
num_tokens: ClassVar[int] = 55
ScalarModalities = {
modality.name: modality
for modality in [
LegacySurveyFluxG,
LegacySurveyFluxR,
LegacySurveyFluxI,
LegacySurveyFluxZ,
LegacySurveyFluxW1,
LegacySurveyFluxW2,
LegacySurveyFluxW3,
LegacySurveyFluxW4,
LegacySurveyShapeR,
LegacySurveyShapeE1,
LegacySurveyShapeE2,
LegacySurveyEBV,
Z,
HSCAG,
HSCAR,
HSCAI,
HSCAZ,
HSCAY,
HSCMagG,
HSCMagR,
HSCMagI,
HSCMagZ,
HSCMagY,
HSCShape11,
HSCShape22,
HSCShape12,
GaiaFluxG,
GaiaFluxBp,
GaiaFluxRp,
GaiaParallax,
Ra,
Dec,
GaiaXpBp,
GaiaXpRp,
]
}
# Convenience type for any modality data
ModalityType = (
Image | Spectrum | Scalar | LegacySurveyCatalog | LegacySurveySegmentationMap
)