From 664eb14cfb2424a13685c2348caca2bcc56bc3ac Mon Sep 17 00:00:00 2001 From: Gaurav Chaudhary Date: Thu, 23 Jul 2026 21:49:37 +0530 Subject: [PATCH] fix(data): replace infinite variable bounds with NA --- NEWS.md | 2 + data-raw/csv/variables.csv | 1650 ++++++++++++++++++------------------ data/variables.rda | Bin 37340 -> 37296 bytes datapackage.json | 6 +- tests/testthat/test-data.R | 9 +- 5 files changed, 838 insertions(+), 829 deletions(-) diff --git a/NEWS.md b/NEWS.md index 9bcb1ff..a164551 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,7 @@ # betydata (development version) +* Replaced `Infinity` and `-Infinity` variable-bound placeholders with `NA`. + # betydata 0.1.0 ## Initial Release diff --git a/data-raw/csv/variables.csv b/data-raw/csv/variables.csv index 3719ad7..6b80a42 100644 --- a/data-raw/csv/variables.csv +++ b/data-raw/csv/variables.csv @@ -1,20 +1,20 @@ id,description,units,notes,created_at,updated_at,name,max,min,standard_name,standard_units,label,type -605,"","",proposed standard name for plant functional type,2016-05-18 15:44:48.424244,2016-05-18 15:44:48.424244,plant_functional_type,Infinity,-Infinity,"","","","" +605,"","",proposed standard name for plant functional type,2016-05-18 15:44:48.424244,2016-05-18 15:44:48.424244,plant_functional_type,,,"","","","" 155,seed germination rate,percent,"",,2011-06-06 14:40:42,seed.germ,100,0,,,, -606,"","",proposed standard for latin family name of plants,2016-05-18 15:45:31.856581,2016-05-18 15:45:31.856581,family_name,Infinity,-Infinity,"","","","" -607,"","",proposed standard for latin genus name of plant,2016-05-18 15:45:58.004736,2016-05-18 15:45:58.004736,genus_name,Infinity,-Infinity,"","","","" +606,"","",proposed standard for latin family name of plants,2016-05-18 15:45:31.856581,2016-05-18 15:45:31.856581,family_name,,,"","","","" +607,"","",proposed standard for latin genus name of plant,2016-05-18 15:45:58.004736,2016-05-18 15:45:58.004736,genus_name,,,"","","","" 22,Leaf Width,mm,"",,2011-06-06 14:40:42,leaf_width,200,0.1,,,, 23,leaf length,mm,"min from Azolla filiculoides, max from Raphia regalis",,2011-06-06 14:40:42,leaf_length,80000,1,,,, -608,"","",proposed standard for latin species name of plant,2016-05-18 15:46:28.063839,2016-05-18 15:46:28.063839,species_name,Infinity,-Infinity,"","","","" +608,"","",proposed standard for latin species name of plant,2016-05-18 15:46:28.063839,2016-05-18 15:46:28.063839,species_name,,,"","","","" 10,Leaf Percent Nitrogen,percent,"",,2011-06-06 14:40:42,leafN,10,0.02,,,, 27,Proportion of daily carbon gain lost to growth respiration,fraction,"growth respiration factor is the fraction of new carbon gain (GPP - Rm) used in the growth of new tissues. This is an ED - specific parameter. In ED, Rg = growth_resp_factor * (GPP - Rm); where Rm is maintenance Respiration.",,2013-08-29 23:12:21,growth_resp_factor,1,0,,,, 160,percent dry matter in leaf,percent,"",,2011-06-06 14:40:42,leafDM,100,0,,,, -56,belowground root biomass,g m-2,"= rhizome + root, a.k.a. total belowground biomass. If rhizome biomass reported seperately, also enter this data seperately as a trait with variable name = rhizome_biomass",,2015-11-02 18:20:40.277355,root_biomass,Infinity,0,"","","","" +56,belowground root biomass,g m-2,"= rhizome + root, a.k.a. total belowground biomass. If rhizome biomass reported seperately, also enter this data seperately as a trait with variable name = rhizome_biomass",,2015-11-02 18:20:40.277355,root_biomass,,0,"","","","" 39,see Farqhuar model,fraction,"efficiency with which light is converted into fixed carbon. mol CO2 fixed per mol irradiance. typical values ~ 0.06; not the same as ED parameter quantum_efficiency, which has same units but is ~ 0.08.",,2016-03-04 11:00:14.37698,quantum_efficiency,1,0,,,, 11,Leaf Percent C,percent,"",,2011-06-06 14:40:42,leafC,100,0,,,, -610,"","",proposed standard name for individual plant identifier from vegetation datasets,2016-05-18 15:47:47.272254,2016-05-18 15:47:47.272254,individual_id,Infinity,-Infinity,"","","","" +610,"","",proposed standard name for individual plant identifier from vegetation datasets,2016-05-18 15:47:47.272254,2016-05-18 15:47:47.272254,individual_id,,,"","","","" 44,proportion of seedlings that die,fraction,model parameter: percentage of allocation to reproduction that dies and goes directly to the litter pool,,2012-01-03 23:56:13,seedling_mortality,1,0,,,, 37,Minimum temperature of photosynthesis,C,"",,2021-04-27 19:26:03.67632,Vm_low_temp,30,-20,,,, 164,percent dry matter content of aerial biomass,percent,"",,2011-06-06 14:40:42,dry_matter_content,100,0,,,, @@ -23,88 +23,88 @@ mol CO2 fixed per mol irradiance. typical values ~ 0.06; not the same as ED para 233,carbon concentration of above_ground biomass,percent,"",2010-11-23 11:31:33,2011-06-06 14:40:42,C_above,100,0,,,, 235,foliar K concentration,percent,"",2010-11-23 11:31:33,2011-06-06 14:40:42,K_foliar,100,0,,,, 236,foliar calcium concentration,percent,"",2010-11-23 11:31:33,2011-06-06 14:40:42,CA_foliar,100,0,,,, -156,petiole length,m,"",,2011-06-06 14:40:42,petioleL,Infinity,0,,,, +156,petiole length,m,"",,2011-06-06 14:40:42,petioleL,,0,,,, 15,Specific Leaf Area,m2 kg-1,"",,2011-06-06 14:40:42,SLA,100,0.1,,,, -30,sapwood allocation (kg sapwood kg-1 leaf m-2),kg kg-1 m-2,"",,2011-06-06 14:40:42,qsw,Infinity,0,,,, +30,sapwood allocation (kg sapwood kg-1 leaf m-2),kg kg-1 m-2,"",,2011-06-06 14:40:42,qsw,,0,,,, 237,foliar magnesium concentraion,percent,"",2010-11-23 11:31:33,2011-06-06 14:40:42,MG_foliar,100,0,,,, -57,"belowground rhizome biomass; does not include tubers, roots",g m-2,"see tuber_biomass for tuberous crops and root crops such as cassava, potato",,2015-05-08 16:37:13.9012,rhizome_biomass,Infinity,0,"","","", -35,Time scale at which low-carbon balance plants die,year-1,"",,2011-06-06 14:40:42,mort1,Infinity,0,,,, -36,Carbon balance ratio for which mortality rapidly increases,year-1,"",,2011-06-06 14:40:42,mort2,Infinity,0,,,, +57,"belowground rhizome biomass; does not include tubers, roots",g m-2,"see tuber_biomass for tuberous crops and root crops such as cassava, potato",,2015-05-08 16:37:13.9012,rhizome_biomass,,0,"","","", +35,Time scale at which low-carbon balance plants die,year-1,"",,2011-06-06 14:40:42,mort1,,0,,,, +36,Carbon balance ratio for which mortality rapidly increases,year-1,"",,2011-06-06 14:40:42,mort2,,0,,,, 5,maximum rate of electron transport,umol [photons] m-2 s-1,Maximum rate of RuBP regeneration.,,2021-04-27 19:24:26.803527,Jmax,1000,0,,,, -8,Photosynthetic rate at ambient CO2(370ppm),umol [CO2] m-2 s-1,"",,2021-04-27 19:24:36.566274,PN,Infinity,-100,,,, -13,Nitrogen Use Efficiency,umol [CO2] g-1 [N] s-1,"",,2021-04-27 19:25:31.212574,NUE,Infinity,0,,,, -19,Leaf Area,cm2 [per plant],"",,2021-04-27 19:25:46.120642,leaf_area_per_plant,Infinity,0,"","","",ecosystem -61,NA,m2 ha-1,"",,2021-04-27 19:27:47.860335,basal_area,Infinity,0,,,, +8,Photosynthetic rate at ambient CO2(370ppm),umol [CO2] m-2 s-1,"",,2021-04-27 19:24:36.566274,PN,,-100,,,, +13,Nitrogen Use Efficiency,umol [CO2] g-1 [N] s-1,"",,2021-04-27 19:25:31.212574,NUE,,0,,,, +19,Leaf Area,cm2 [per plant],"",,2021-04-27 19:25:46.120642,leaf_area_per_plant,,0,"","","",ecosystem +61,NA,m2 ha-1,"",,2021-04-27 19:27:47.860335,basal_area,,0,,,, 62,total aboveground biomass,Mg ha-1,"",,2021-04-27 19:27:51.963645,a_biomass,1000,0,"","","","" -63,annual aboveground yield,Mg ha-1 yr-1,"",,2021-04-27 19:28:02.699898,Ayield,Infinity,0,,,, -66,total pulpwood,m3 ha-1,"",,2021-04-27 19:28:09.42499,a_pulp_vol,Infinity,0,,,, -67,annual pulpwood,m3 ha-1,"",,2021-04-27 19:28:10.306011,a_pulp_vol_y,Infinity,0,,,, -68,fine root biomass,g m-2,"Biomass_root_fine is equivalent, but has units Mg/ha",,2021-04-27 19:28:13.895784,fine_root_biomass,Infinity,0,"","","", -78,dry weight per leaf,g [per leaf],"",,2021-04-27 19:28:23.287941,leaf_mass_per_leaf,Infinity,-Infinity,,,, +63,annual aboveground yield,Mg ha-1 yr-1,"",,2021-04-27 19:28:02.699898,Ayield,,0,,,, +66,total pulpwood,m3 ha-1,"",,2021-04-27 19:28:09.42499,a_pulp_vol,,0,,,, +67,annual pulpwood,m3 ha-1,"",,2021-04-27 19:28:10.306011,a_pulp_vol_y,,0,,,, +68,fine root biomass,g m-2,"Biomass_root_fine is equivalent, but has units Mg/ha",,2021-04-27 19:28:13.895784,fine_root_biomass,,0,"","","", +78,dry weight per leaf,g [per leaf],"",,2021-04-27 19:28:23.287941,leaf_mass_per_leaf,,,,,, 81,temperature of leaf,C,"",,2021-04-27 19:28:58.406072,leafT,100,-100,,,, 583,reflectance,"",used for all light (equivalent to combination of leaf_reflect_nir and leaf_reflect_vis),2015-06-09 16:22:26.815443,2021-04-27 19:46:12.767377,leaf_reflectance,1,0,"","","", -612,"",m,proposed standard name for height on the plant of stem diameter measurement. Covariate for stem_diameter.,2016-05-18 15:51:17.779568,2021-04-27 19:47:15.286871,stem_diameter_height,Infinity,-Infinity,"","","","" -144,stem water potential,MPa,"",,2011-06-06 14:40:42,SWP,Infinity,-Infinity,,,, -145,relative growth rate,g g-1 d-1,"",,2011-06-06 14:40:42,RGR,Infinity,-Infinity,,,, -146,specific root length,m/g fresh biomass,"",,2011-06-06 14:40:42,SRL,Infinity,-Infinity,,,, -147,delta 13C relative to pee-dee std,per mil,"",,2011-06-06 14:40:42,del13c,Infinity,-Infinity,,,, -141,NA,umol m-2 s-1,"",,2011-06-06 14:40:42,QE_Photosys2_max,Infinity,0,,,, -74,total yield of coarse root,Mg ha-1,"",,2012-06-22 21:27:44,coarse_root_biomass,Infinity,0,,,, +612,"",m,proposed standard name for height on the plant of stem diameter measurement. Covariate for stem_diameter.,2016-05-18 15:51:17.779568,2021-04-27 19:47:15.286871,stem_diameter_height,,,"","","","" +144,stem water potential,MPa,"",,2011-06-06 14:40:42,SWP,,,,,, +145,relative growth rate,g g-1 d-1,"",,2011-06-06 14:40:42,RGR,,,,,, +146,specific root length,m/g fresh biomass,"",,2011-06-06 14:40:42,SRL,,,,,, +147,delta 13C relative to pee-dee std,per mil,"",,2011-06-06 14:40:42,del13c,,,,,, +141,NA,umol m-2 s-1,"",,2011-06-06 14:40:42,QE_Photosys2_max,,0,,,, +74,total yield of coarse root,Mg ha-1,"",,2012-06-22 21:27:44,coarse_root_biomass,,0,,,, 148,percent emergence of planted seeds,percent,"",,2011-06-06 14:40:42,seed.emerg,100,0,,,, 150,percent N in belowground live tissue,percent,"",,2011-06-06 14:40:42,rootN,100,0,,,, 151,percent N in senesced leaves,percent,"",,2011-06-06 14:40:42,litterN,100,0,,,, -614,"","",proposed standard name for plant stem number,2016-05-18 15:54:37.190195,2016-05-18 15:54:37.190195,stem_number,Infinity,-Infinity,"","","","" -221,Leaf biomass allometry,"","",2010-11-23 11:31:33,2011-06-06 14:40:42,"b1Bl,b2Bl",Infinity,-Infinity,,,, -222,Stem biomass allometry,"","",2010-11-23 11:31:33,2011-06-06 14:40:42,"b1Bs,b2Bs",Infinity,-Infinity,,,, -223,Height allometry,"","",2010-11-23 11:31:33,2011-06-06 14:40:42,"b1Ht, b2Ht",Infinity,-Infinity,,,, +614,"","",proposed standard name for plant stem number,2016-05-18 15:54:37.190195,2016-05-18 15:54:37.190195,stem_number,,,"","","","" +221,Leaf biomass allometry,"","",2010-11-23 11:31:33,2011-06-06 14:40:42,"b1Bl,b2Bl",,,,,, +222,Stem biomass allometry,"","",2010-11-23 11:31:33,2011-06-06 14:40:42,"b1Bs,b2Bs",,,,,, +223,Height allometry,"","",2010-11-23 11:31:33,2011-06-06 14:40:42,"b1Ht, b2Ht",,,,,, 133,chloride content in dry weight,percent,"",,2012-02-13 21:21:49,aboveCl,100,0,,,, 90,cellulose concentration in leaf,percent,"",,2011-06-06 14:40:42,CelluloseL,100,0,,,, 91,cellulose concentration in stem,percent,"",,2011-06-06 14:40:42,CelluloseS,100,0,,,, 92,ash concentration in leaf,percent,"",,2011-06-06 14:40:42,leaf_ash,100,0,,,, 93,ash concentration in stem,percent,"",,2011-06-06 14:40:42,stem_ash,100,0,,,, -12,Photosynthetic Water Use Efficiency,umol [CO2] mmol -1 [H2O],"",,2021-04-27 19:25:21.549501,PWUE,Infinity,0,,,, +12,Photosynthetic Water Use Efficiency,umol [CO2] mmol -1 [H2O],"",,2021-04-27 19:25:21.549501,PWUE,,0,,,, 98,phosphorus in root,percent,"",,2011-06-06 14:40:42,rootP,100,0,,,, 99,potassium in root,percent,"",,2011-06-06 14:40:42,rootK,100,0,,,, 100,total nonstructural carbohydrates in leaf,percent,"",,2011-06-06 14:40:42,TNCL,100,0,,,, 101,total nonstructural carbohydrates in stem,percent,"",,2011-06-06 14:40:42,TNCS,100,0,,,, 104,nitrogen in stem,percent,"",,2011-06-06 14:40:42,stemN,100,0,,,, 106,nitrogen in rhizomes,percent,"",,2011-06-06 14:40:42,rhizomesN,100,0,,,, -115,total number of leaves per shoot,"","",,2011-06-06 14:40:42,leaves_per_shoot_total,Infinity,0,,,, -94,nitrogen concentration in soil,mg kg-1 soil-1,"",,2011-06-06 14:40:42,soilN,Infinity,0,,,, +115,total number of leaves per shoot,"","",,2011-06-06 14:40:42,leaves_per_shoot_total,,0,,,, +94,nitrogen concentration in soil,mg kg-1 soil-1,"",,2011-06-06 14:40:42,soilN,,0,,,, 120,variant dry matter in rhizome,percent,"",,2011-06-06 14:40:42,rhizome_variant_DM,100,0,,,, -95,phosphorus concentration in soil,mg kg-1 soil-1,"",,2011-06-06 14:40:42,soilP,Infinity,0,,,, -96,potassium concentration in soil,mg kg-1 soil-1,"",,2011-06-06 14:40:42,soilK,Infinity,0,,,, -102,NA,g m-2,"",,2011-06-06 14:40:42,leaf_litter,Infinity,0,,,, +95,phosphorus concentration in soil,mg kg-1 soil-1,"",,2011-06-06 14:40:42,soilP,,0,,,, +96,potassium concentration in soil,mg kg-1 soil-1,"",,2011-06-06 14:40:42,soilK,,0,,,, +102,NA,g m-2,"",,2011-06-06 14:40:42,leaf_litter,,0,,,, 130,germination of the seed in the inflorescences,percent,"",,2011-06-06 14:40:42,germination,100,0,,,, 137,leaf internal CO2 concentration,Pa,"",,2011-06-06 14:40:42,Ci,1200,0,,,, -76,turn over rate of litter,year-1,"",,2014-06-27 18:51:03.954107,turn_over_rate,Infinity,-Infinity,"","","", -107,date of emergence,date,"",,2011-06-06 14:40:42,emergence,Infinity,-Infinity,,,, -108,date of senescence,date,"",,2011-06-06 14:40:42,senescence,Infinity,-Infinity,,,, -121,phosphorus in rhizome,percent,"",,2011-06-06 14:40:42,rhizomeP,Infinity,-Infinity,,,, -122,potassium in rhizome,percent,"",,2011-06-06 14:40:42,rhizomeK,Infinity,-Infinity,,,, -129,date of flowering,date,"",,2011-06-06 14:40:42,flowering_date,Infinity,-Infinity,,,, +76,turn over rate of litter,year-1,"",,2014-06-27 18:51:03.954107,turn_over_rate,,,"","","", +107,date of emergence,date,"",,2011-06-06 14:40:42,emergence,,,,,, +108,date of senescence,date,"",,2011-06-06 14:40:42,senescence,,,,,, +121,phosphorus in rhizome,percent,"",,2011-06-06 14:40:42,rhizomeP,,,,,, +122,potassium in rhizome,percent,"",,2011-06-06 14:40:42,rhizomeK,,,,,, +129,date of flowering,date,"",,2011-06-06 14:40:42,flowering_date,,,,,, 420,Coarse root biomass,Mg ha-1,"Coarse root biomass. Typical size cutoffs will be 1-2mm diameter. Given the option, use 1 mm. -covariates: depth, root_diameter_min, root_diameter_max",2012-06-12 16:35:03,2012-06-22 18:01:55,Biomass_root_coarse,Infinity,-Infinity,,,, -123,fructose in rhizome,mg g-1,"",,2011-06-06 14:40:42,rhizome_fructose,Infinity,0,,,, -124,glucose in rhizome,mg g-1,"",,2011-06-06 14:40:42,rhizome_glucose,Infinity,0,,,, -125,sucrose in rhizome,mg g-1,"",,2011-06-06 14:40:42,rhizome_sucrose,Infinity,0,,,, -128,Density of individual plants,[shoot] count m-2,"",,2021-04-27 19:29:21.407391,shoot_density_total,Infinity,-Infinity,,,, -139,NA,umol [electron] m-2 s-1,"",,2021-04-27 19:30:23.498118,ETR,Infinity,0,,,, +covariates: depth, root_diameter_min, root_diameter_max",2012-06-12 16:35:03,2012-06-22 18:01:55,Biomass_root_coarse,,,,,, +123,fructose in rhizome,mg g-1,"",,2011-06-06 14:40:42,rhizome_fructose,,0,,,, +124,glucose in rhizome,mg g-1,"",,2011-06-06 14:40:42,rhizome_glucose,,0,,,, +125,sucrose in rhizome,mg g-1,"",,2011-06-06 14:40:42,rhizome_sucrose,,0,,,, +128,Density of individual plants,[shoot] count m-2,"",,2021-04-27 19:29:21.407391,shoot_density_total,,,,,, +139,NA,umol [electron] m-2 s-1,"",,2021-04-27 19:30:23.498118,ETR,,0,,,, 135,atmospheric CO2 concentration umol mol-1 = ppm,umol [CO2] mol-1 [air],"",,2021-04-27 19:30:05.898394,co2atm,1000,0,,,, -140,NA,umol [electron] m-2 s-1,"",,2021-04-27 19:30:24.24142,ETRsat,Infinity,0,,,, +140,NA,umol [electron] m-2 s-1,"",,2021-04-27 19:30:24.24142,ETRsat,,0,,,, 153,seed mass,g [per seed],"min from epiphytic orchid Corallorhiza maculata, max from Lodoicea maldivica",,2021-04-27 19:30:44.407224,seed_mass,18000,0.000001,,,, -615,"",m,proposed standard name for X cartesian coordinate of every mapped stem in a vegetation plot,2016-05-18 15:55:35.08003,2021-04-27 19:47:18.35872,stem_x_location,Infinity,-Infinity,"","","","" -405,Annual vegetation carbon storage,Mg [C] ha−1,"",2012-06-05 19:52:46,2021-04-27 19:39:47.78887,C_ annual biomass production,Infinity,0,,,, -616,"",m,proposed standard name for Y cartesian coordinate of every mapped stem in a vegetation plot,2016-05-18 15:55:57.696964,2021-04-27 19:47:20.232228,stem_y_location,Infinity,-Infinity,"","","","" +615,"",m,proposed standard name for X cartesian coordinate of every mapped stem in a vegetation plot,2016-05-18 15:55:35.08003,2021-04-27 19:47:18.35872,stem_x_location,,,"","","","" +405,Annual vegetation carbon storage,Mg [C] ha−1,"",2012-06-05 19:52:46,2021-04-27 19:39:47.78887,C_ annual biomass production,,0,,,, +616,"",m,proposed standard name for Y cartesian coordinate of every mapped stem in a vegetation plot,2016-05-18 15:55:57.696964,2021-04-27 19:47:20.232228,stem_y_location,,,"","","","" 214,ratio of leaf area to sapwood area at peak lai,m2 [leaf] m-2 [sapwood],"sapwood_ratio (m2/m2) is a distinct parameter from sapwood allocation (kg C sapwoood kg-1 C leaf m-1) sapwood_ratio used in ed2 to estimate qsw. sapwood_ratio is the ratio of leaf area to sapwood area (m2/m2) at peak leaf area. this parameter will be easier to find than _allocation (it's something that is occasionally calculated by empiricists). -",2010-10-28 22:07:53,2021-04-27 19:32:00.921272,sapwood_ratio,Infinity,0,,,, -2,photorespiration,umol [CO2] m-1 s-1,Not used in traits. Used for inputs metadata.,,2021-04-27 19:24:08.647149,RP,Infinity,0,,,, -3,rubisco activity,umol [CO2] m-1 s-1,"",,2021-04-27 19:24:21.08438,RA,Infinity,-Infinity,,,, +",2010-10-28 22:07:53,2021-04-27 19:32:00.921272,sapwood_ratio,,0,,,, +2,photorespiration,umol [CO2] m-1 s-1,Not used in traits. Used for inputs metadata.,,2021-04-27 19:24:08.647149,RP,,0,,,, +3,rubisco activity,umol [CO2] m-1 s-1,"",,2021-04-27 19:24:21.08438,RA,,,,,, 167,percent potassium (K) in stalk,percent,"",,2012-06-27 22:39:03,stalkK,100,0,,,, 191,soil depth,cm,"positive values are belowground, negative values aboveground",,2011-06-06 14:40:42,depth,1000,0,,,, 192,Fraction of storage to seed reproduction,fraction,allocation to clonal reproduction currently not implemented in ED2.1 (as of 06/29/2010),2010-06-29 22:38:09,2012-10-29 22:59:47,r_fract,100,0,,,, @@ -114,51 +114,51 @@ sapwood_ratio is the ratio of leaf area to sapwood area (m2/m2) at peak leaf are 24,Freezing mortality,degrees C,"",,2018-04-13 18:33:28.269053,plant_min_temp,10,-100,"","",Freezing Mortality Temperature,"" 243,size class,mm,"Describes the maximum size of the root size class. Commonly this will be = 2 for fine roots where the <2mm size class is sampled. Can be used in to define the bounds of a root size class, e.g. root_diameter_max = 4 and root_diameter_min = 2.",2010-12-08 00:42:27,2011-06-30 15:33:58,root_diameter_max,1000,0.1,,,, 197,"","","",2010-09-16 22:34:13,2011-06-06 14:40:42,b2Bl,4,0,,,, -209,Height allometry coefficient,m,check units,2010-09-28 22:21:34,2011-06-06 14:40:42,b1Ht,Infinity,0,,,, -206,Water Use Efficiency,g plant biomass kg-1 H2O transpired,"",2010-09-20 21:24:50,2011-06-06 14:40:42,WUE,Infinity,-Infinity,,,, -213,surface CO2 efflux,mg CO2 m-2 h-1,must include soil temp and moisture as covariates when entering as a trait ,2010-10-18 16:35:28,2012-07-19 16:05:03,soil_respiration_m2,Infinity,0,,,, +209,Height allometry coefficient,m,check units,2010-09-28 22:21:34,2011-06-06 14:40:42,b1Ht,,0,,,, +206,Water Use Efficiency,g plant biomass kg-1 H2O transpired,"",2010-09-20 21:24:50,2011-06-06 14:40:42,WUE,,,,,, +213,surface CO2 efflux,mg CO2 m-2 h-1,must include soil temp and moisture as covariates when entering as a trait ,2010-10-18 16:35:28,2012-07-19 16:05:03,soil_respiration_m2,,0,,,, 29,converts Vm to leaf respiration,percent,"",,2011-06-06 14:40:42,dark_respiration_factor,100,0,,,, -228,total aboveground yield,Mg ha-1,"",2010-11-23 11:31:33,2012-06-22 21:50:03,Tyield,Infinity,0,,,, -212,Net Ecosystem Productivity,g m-2 d-1,"",2010-10-15 18:43:06,2011-06-06 14:40:42,NEP,Infinity,-Infinity,,,, -229,total stem volume,m3 ha-1,"",2010-11-23 11:31:33,2012-01-13 20:14:47,stem_volume_total,Infinity,-Infinity,,,, -198,"","","",2010-09-16 22:38:33,2011-06-06 14:40:42,b1Bs,Infinity,-Infinity,,,, -199,"","","",2010-09-16 22:39:07,2011-06-06 14:40:42,b2Bs,Infinity,-Infinity,,,, -238,total yield of coarse root,Mg ha-1,"",2010-11-23 11:31:33,2012-06-22 21:50:25,Tyield_coarse_root,Infinity,0,,,, -239,total yield of fine root,Mg ha-1,"",2010-11-23 11:31:33,2012-06-22 21:50:33,Tyield_fine_root,Infinity,0,,,, -240,total leaf yield,Mg ha-1,"",2010-11-23 11:31:33,2013-10-09 02:32:31,leaf_yield,Infinity,0,,,, -246,Biomass of living parts of plant (stem+Leaves),g m-2,"",2010-12-18 06:40:38,2012-02-07 23:07:32,aboveBiomass,Infinity,0,,,, -25,Density independent mortality,year-1,"",,2011-06-06 14:40:42,mort3,Infinity,0,,,, +228,total aboveground yield,Mg ha-1,"",2010-11-23 11:31:33,2012-06-22 21:50:03,Tyield,,0,,,, +212,Net Ecosystem Productivity,g m-2 d-1,"",2010-10-15 18:43:06,2011-06-06 14:40:42,NEP,,,,,, +229,total stem volume,m3 ha-1,"",2010-11-23 11:31:33,2012-01-13 20:14:47,stem_volume_total,,,,,, +198,"","","",2010-09-16 22:38:33,2011-06-06 14:40:42,b1Bs,,,,,, +199,"","","",2010-09-16 22:39:07,2011-06-06 14:40:42,b2Bs,,,,,, +238,total yield of coarse root,Mg ha-1,"",2010-11-23 11:31:33,2012-06-22 21:50:25,Tyield_coarse_root,,0,,,, +239,total yield of fine root,Mg ha-1,"",2010-11-23 11:31:33,2012-06-22 21:50:33,Tyield_fine_root,,0,,,, +240,total leaf yield,Mg ha-1,"",2010-11-23 11:31:33,2013-10-09 02:32:31,leaf_yield,,0,,,, +246,Biomass of living parts of plant (stem+Leaves),g m-2,"",2010-12-18 06:40:38,2012-02-07 23:07:32,aboveBiomass,,0,,,, +25,Density independent mortality,year-1,"",,2011-06-06 14:40:42,mort3,,0,,,, 254,leaf mass per area leaf (kg leaf / m2 leaf),kg m-2,equal to SLM (specific leaf mass). This is the mass per unit area of a leaf.,2011-02-13 05:39:21,2011-06-06 14:40:42,LMA,20,0,,,, 255,"",year,"",2011-02-14 19:51:45,2012-02-13 21:26:19,leaf_longevity,500,0.01,,,, -304,Total leaf biomass,g m-2,"",2011-09-08 17:08:26,2015-11-02 18:28:42.546041,leaf_biomass,Infinity,0,"","","","" -154,number of seeds per plant,count [seeds per plant],"",,2021-04-27 19:30:57.907435,seeds.per.plant,Infinity,-Infinity,,,, -163,dry weight of aerial biomass,g [per plant],"",,2021-04-27 19:31:34.151185,aboveground_biomass_per_plant,Infinity,0,,,, -210,Height allometry coefficient,cm -1,check units,2010-09-28 22:21:59,2021-04-27 19:31:48.000971,b2Ht,Infinity,-Infinity,,,, -211,carbon in stems,g kg-1,"",2010-10-08 22:05:13,2021-04-27 19:31:52.278574,stemC,Infinity,-Infinity,,,, -217,Nitrogen Use Efficiency,g g-1 [N],"",2010-11-19 22:13:57,2021-04-27 19:32:08.038578,NUE (N),Infinity,-Infinity,,,, -218,Nutrient Use efficieny,g g-1 [P],"",2010-11-19 22:14:36,2021-04-27 19:32:13.93534,NUE (P),Infinity,-Infinity,,,, -220,Phosphorus Productivity,g g-1 [P] yr-1,"",2010-11-19 23:36:04,2021-04-27 19:32:32.44348,A (P),Infinity,-Infinity,,,, -219,Nitrogen Productivity,g g-1 [N] yr-1,"",2010-11-19 23:33:49,2021-04-27 19:32:35.808885,A (N),Infinity,-Infinity,,,, -247,grams of root per plant,g [root plant-1],"",2010-12-18 06:41:56,2021-04-27 19:33:26.681501,root_g_per_plant,Infinity,0,,,, -248,grams of shoot per plant,g [shoot plant-1],"",2010-12-18 06:42:33,2021-04-27 19:33:27.542747,Shoot_g_per_plant,Infinity,0,,,, +304,Total leaf biomass,g m-2,"",2011-09-08 17:08:26,2015-11-02 18:28:42.546041,leaf_biomass,,0,"","","","" +154,number of seeds per plant,count [seeds per plant],"",,2021-04-27 19:30:57.907435,seeds.per.plant,,,,,, +163,dry weight of aerial biomass,g [per plant],"",,2021-04-27 19:31:34.151185,aboveground_biomass_per_plant,,0,,,, +210,Height allometry coefficient,cm -1,check units,2010-09-28 22:21:59,2021-04-27 19:31:48.000971,b2Ht,,,,,, +211,carbon in stems,g kg-1,"",2010-10-08 22:05:13,2021-04-27 19:31:52.278574,stemC,,,,,, +217,Nitrogen Use Efficiency,g g-1 [N],"",2010-11-19 22:13:57,2021-04-27 19:32:08.038578,NUE (N),,,,,, +218,Nutrient Use efficieny,g g-1 [P],"",2010-11-19 22:14:36,2021-04-27 19:32:13.93534,NUE (P),,,,,, +220,Phosphorus Productivity,g g-1 [P] yr-1,"",2010-11-19 23:36:04,2021-04-27 19:32:32.44348,A (P),,,,,, +219,Nitrogen Productivity,g g-1 [N] yr-1,"",2010-11-19 23:33:49,2021-04-27 19:32:35.808885,A (N),,,,,, +247,grams of root per plant,g [root plant-1],"",2010-12-18 06:41:56,2021-04-27 19:33:26.681501,root_g_per_plant,,0,,,, +248,grams of shoot per plant,g [shoot plant-1],"",2010-12-18 06:42:33,2021-04-27 19:33:27.542747,Shoot_g_per_plant,,0,,,, 273,Above ground fraction of structural biomass,fraction,"stem/(stem + coarse roots); structural biomass = wood",2011-03-04 21:41:39,2011-10-19 23:33:47,agf_bs,1,0,,,, 289,age of leaf being measured,year,used as covariate when leaf age is given. ,2011-05-03 16:08:08,2012-01-05 18:23:03,leaf_age,50,0,,,, 290,percent N in flower,percent,"",2011-05-16 20:33:35,2011-06-06 14:40:42,flowerN,100,0,,,, 291,Biomass of flower,g m-2,"",2011-05-17 22:20:45,2011-06-06 14:40:42,flower_biomass,2000,0,,,, -40,rate of leaf loss,year-1,This is the inverse of leaf_longevity,,2012-02-13 21:31:45,leaf_turnover_rate,Infinity,-Infinity,,,, +40,rate of leaf loss,year-1,This is the inverse of leaf_longevity,,2012-02-13 21:31:45,leaf_turnover_rate,,,,,, 296,Vcmax at 15,umol m-2 s-1,"",2011-06-08 19:20:30,2012-04-06 18:05:40,Vm0,500,0,,,, 298,Latent heat flux,W m-2,"",2011-06-22 16:18:42,2011-06-22 16:18:42,LE,500,-500,,,, 299,Sensible heat flux,W m-2,"",2011-06-22 16:19:07,2011-06-22 16:19:07,H,500,-500,,,, 300,size class,mm,"Describes the minimum size of the root size class. Usually not required, can be left blank when root_diameter_min = 0. Can be used in to define the bounds of a root size class, e.g. root_diameter_max = 4 and root_diameter_min = 2.",2011-06-30 15:32:59,2011-06-30 15:33:56,root_diameter_min,1000,0,,,, 302,percent C in belowground live tissue,percent,"",2011-08-05 16:35:17,2011-08-05 16:35:17,rootC,100,0,,,, 303,length of time that a root lives,year,"set min < 1 d, max = 100 y",2011-09-06 22:03:51,2011-09-06 22:03:51,root_lifespan,100,0.002,,,, -256,Stem biomass,g m-2,aboveground woody biomass in trees / shrubs; sheath biomass in grasses,2011-02-20 10:29:02,2015-11-02 17:35:44.171496,stem_biomass,Infinity,0,"","","","" -265,Biomass of mature stems per area ground,g m-2,"",2011-02-28 23:19:28,2011-06-06 14:40:42,mature stem biomass,Infinity,0,,,, -266,Biomass of cabbage per area ground,g m-2,"Cabbage is the immature top of the stalk plus green leaf sheaths. This is distinct from both leaf and stalk, although it is more commonly associated with one of these pools.",2011-02-28 23:26:59,2011-06-06 14:40:42,cabbage biomass,Infinity,0,,,, -282,dry mass of total biomass,g m-2,"",2011-03-15 01:26:22,2011-06-06 14:40:42,DM_total biomass,Infinity,0,,,, -283,sucrose yield,g m-2,"",2011-03-15 01:46:30,2011-06-06 14:40:42,yield_sucrose,Infinity,0,,,, -284,fiber yield,Mg ha-1,"",2011-03-15 01:48:44,2013-09-27 20:25:02,yield_fiber,Infinity,0,,,, +256,Stem biomass,g m-2,aboveground woody biomass in trees / shrubs; sheath biomass in grasses,2011-02-20 10:29:02,2015-11-02 17:35:44.171496,stem_biomass,,0,"","","","" +265,Biomass of mature stems per area ground,g m-2,"",2011-02-28 23:19:28,2011-06-06 14:40:42,mature stem biomass,,0,,,, +266,Biomass of cabbage per area ground,g m-2,"Cabbage is the immature top of the stalk plus green leaf sheaths. This is distinct from both leaf and stalk, although it is more commonly associated with one of these pools.",2011-02-28 23:26:59,2011-06-06 14:40:42,cabbage biomass,,0,,,, +282,dry mass of total biomass,g m-2,"",2011-03-15 01:26:22,2011-06-06 14:40:42,DM_total biomass,,0,,,, +283,sucrose yield,g m-2,"",2011-03-15 01:46:30,2011-06-06 14:40:42,yield_sucrose,,0,,,, +284,fiber yield,Mg ha-1,"",2011-03-15 01:48:44,2013-09-27 20:25:02,yield_fiber,,0,,,, 319,Bark Percent C,percent,"",2012-01-05 19:00:59,2012-01-05 19:00:59,barkC,100,0,,,, 321,fraction of total plant dry weight in branch,fraction,"",2012-01-05 19:12:33,2012-01-05 19:12:33,branch_biomass_fraction,1,0,,,, 272,fine root carbon to leaf carbon allocation,[ratio],"This is allocation, not standing biomass. In other words, this is fine root NPP over leaf NPP, not fine root biomass over leaf biomass",2011-03-04 21:25:51,2021-04-27 19:23:15.519764,FRC_LC,25,0,,,, @@ -181,10 +181,10 @@ senescent: past peak productivity",2011-01-27 20:59:23,2021-04-27 19:33:37.42513 271,Fract. of cabbage in total biomass,fraction,"",2011-03-04 04:08:22,2021-04-27 19:34:25.60032,Fraction of cabbage in total biomass,1,0,,,, 274,Fract. of green leaf in total biomass,fraction,"",2011-03-14 03:39:07,2021-04-27 19:34:28.054333,Fraction of green leaf in total biomass,1,0,,,, 275,Fract. of stalk in total biomass,fraction,"",2011-03-14 03:42:48,2021-04-27 19:34:30.731365,Fraction of stalk in total biomass,1,0,,,, -276,dry mass of green leaf,g m-2,"",2011-03-14 03:59:36,2021-04-27 19:34:34.547865,DM_green leaf,Infinity,0,,,, -277,dry mass of mature stem,g m-2,"",2011-03-14 04:04:06,2021-04-27 19:34:36.675473,DM_mature stem,Infinity,0,,,, -278,dry mass of cabbage,g m-2,"",2011-03-14 04:08:42,2021-04-27 19:34:37.133755,DM_cabbage,Infinity,0,,,, -279,dry mass of trash,g m-2,"",2011-03-14 04:12:24,2021-04-27 19:34:37.587,DM_trash,Infinity,0,,,, +276,dry mass of green leaf,g m-2,"",2011-03-14 03:59:36,2021-04-27 19:34:34.547865,DM_green leaf,,0,,,, +277,dry mass of mature stem,g m-2,"",2011-03-14 04:04:06,2021-04-27 19:34:36.675473,DM_mature stem,,0,,,, +278,dry mass of cabbage,g m-2,"",2011-03-14 04:08:42,2021-04-27 19:34:37.133755,DM_cabbage,,0,,,, +279,dry mass of trash,g m-2,"",2011-03-14 04:12:24,2021-04-27 19:34:37.587,DM_trash,,0,,,, 286,Growing degree-days,C days,Accumulated growing degree-day threshold value for a specific biological event (e.g. leaf-out).,2011-03-28 17:29:48,2021-04-27 19:34:47.732436,GDD,10000,0,,,, 308,Leaf Biomass,g [per plant],"",2011-10-28 16:39:24,2021-04-27 19:35:39.701504,leaf_biomass_plant,100000,0,,,, 320,branch temperature during measurement,C,"",2012-01-05 19:06:48,2021-04-27 19:36:06.197085,branchT,50,-50,,,, @@ -196,80 +196,80 @@ Canopy Height",2012-01-06 20:39:29,2012-01-06 20:39:29,leaf_biomass_fraction,1,0 341,Soil carbon content,percent,"",2012-01-06 21:55:11,2012-01-06 21:55:40,soilC,100,0,,,, 329,new root carbon to new leaf carbon allocation,[ratio],"Necessary covariates: -root_diameter_min, root_diameter_ max, root_age, and leaf_age",2012-01-06 20:26:47,2021-04-27 19:23:15.519764,rootC2leafC_new,Infinity,0,,,, -45,Sets a plant's supply of water,m2 kg-1 s-1,"",,2021-04-27 19:26:43.765793,water_conductance,Infinity,-Infinity,,,, +root_diameter_min, root_diameter_ max, root_age, and leaf_age",2012-01-06 20:26:47,2021-04-27 19:23:15.519764,rootC2leafC_new,,0,,,, +45,Sets a plant's supply of water,m2 kg-1 s-1,"",,2021-04-27 19:26:43.765793,water_conductance,,,,,, 342,soil organic matter,percent,"",2012-01-06 21:57:33,2012-01-06 21:57:33,soilOrganic,100,0,,,, 343,age of the stand: days since planting or disturbance,days,"",2012-01-06 21:59:27,2015-05-08 16:51:57.614715,age,50000,0,"","","", -346,rooting volume,m3,"",2012-01-06 22:16:19,2012-01-06 22:16:19,root_volume,Infinity,-Infinity,,,, +346,rooting volume,m3,"",2012-01-06 22:16:19,2012-01-06 22:16:19,root_volume,,,,,, 336,fraction of total plant dry weight in roots,fraction,"Necessary covariates: -root_diameter_min & root_diameter_ max",2012-01-06 21:04:45,2012-01-06 21:04:45,root_biomass_fraction,Infinity,0,,,, +root_diameter_min & root_diameter_ max",2012-01-06 21:04:45,2012-01-06 21:04:45,root_biomass_fraction,,0,,,, 337,"root repiration of growing tissue, mass basis, at given temperature",umol kg-1 s-1,"Necessary covariates: -rootT root_diameter_min & root_diameter_ max",2012-01-06 21:05:19,2012-01-06 21:07:00,root_growth_respiration_rate,Infinity,0,,,, -232,annual pulpwood,m3 ha-1,"",2010-11-23 11:31:33,2021-04-27 19:32:46.723275,Apulpwood,Infinity,-Infinity,,,, -18,Leaf Area Index,m2 m-2,One sided (m2 leaf m-2 ground),,2017-10-19 01:16:42.229609,LAI,Infinity,0,,,, -624,Fine root production percentage,percent,dvmdostem parameter controlling the percentage of fine root production at 20 cm depth,2017-10-09 22:10:13.421282,2017-10-09 22:10:13.421282,frprod_perc_20,Infinity,-Infinity,"","",frprod_perc_20,plant trait -46,see two-stream radiation model,degrees,For ED2: leaf_scatter_vis = leaf_reflect_vis(ipft) + leaf_trans_vis(ipft),,2013-09-22 15:40:41,leaf_scatter_vis,Infinity,-Infinity,,,, +rootT root_diameter_min & root_diameter_ max",2012-01-06 21:05:19,2012-01-06 21:07:00,root_growth_respiration_rate,,0,,,, +232,annual pulpwood,m3 ha-1,"",2010-11-23 11:31:33,2021-04-27 19:32:46.723275,Apulpwood,,,,,, +18,Leaf Area Index,m2 m-2,One sided (m2 leaf m-2 ground),,2017-10-19 01:16:42.229609,LAI,,0,,,, +624,Fine root production percentage,percent,dvmdostem parameter controlling the percentage of fine root production at 20 cm depth,2017-10-09 22:10:13.421282,2017-10-09 22:10:13.421282,frprod_perc_20,,,"","",frprod_perc_20,plant trait +46,see two-stream radiation model,degrees,For ED2: leaf_scatter_vis = leaf_reflect_vis(ipft) + leaf_trans_vis(ipft),,2013-09-22 15:40:41,leaf_scatter_vis,,,,,, 47,see two-stream radiation model,degrees,"For ED2: leaf_backscatter_vis(ipft) = leaf_scatter_vis(ipft)+0.25*(leaf_reflect_vis(ipft) - leaf_trans_vis(ipft))* ( 1.d0 + orient_factor(ipft)) ** 2 ) / ( 2.d0 * leaf_scatter_vis(ipft) ) -Inside ED2 known as leaf_backscatter_vis",,2013-09-22 15:42:52,diffuse_backscatter_vis,Infinity,-Infinity,,,, +Inside ED2 known as leaf_backscatter_vis",,2013-09-22 15:42:52,diffuse_backscatter_vis,,,,,, 618,base temperature for computing Growing Degree Days (GDD),C,"",2016-10-05 21:38:36.033678,2018-04-13 17:35:35.895294,gdd_tbase,100,-10,"","",GDD Base Temperature,model -65,annual stem volume,m3 ha-1 y-1,"",,2012-01-13 20:22:30,stem_volume_annual,Infinity,-Infinity,,,, -16,Leaf Thickness,um,"",,2011-06-06 14:40:42,leafTh,Infinity,-Infinity,,,, -162,fresh weight of aerial biomass,g [per plant],"",,2021-04-27 19:31:30.404069,fresh_weight,Infinity,-Infinity,,,, -231,total pulpwood,m3 ha-1,"",2010-11-23 11:31:33,2021-04-27 19:32:45.459461,Tpulpwood,Infinity,-Infinity,,,, +65,annual stem volume,m3 ha-1 y-1,"",,2012-01-13 20:22:30,stem_volume_annual,,,,,, +16,Leaf Thickness,um,"",,2011-06-06 14:40:42,leafTh,,,,,, +162,fresh weight of aerial biomass,g [per plant],"",,2021-04-27 19:31:30.404069,fresh_weight,,,,,, +231,total pulpwood,m3 ha-1,"",2010-11-23 11:31:33,2021-04-27 19:32:45.459461,Tpulpwood,,,,,, 244,rate of fine root respiration at reference soil temperature,umol [CO2] kg-1 s-1,"Fine roots assumed to be given as dry weight and <2mm size class. Root size class (root_diameter) and measurement temperature (rootT) must be added as covariate. Equivalent to units of nmol CO_2 g-1 s-1. If converted from O2 consumption, assume 1 mol O2 = 1 mol CO2. ",2010-12-08 17:57:52,2021-04-27 19:32:58.459321,root_respiration_rate,600,0,,,, 323,branch repiration required for maintenancing existing tissues,umol [CO2] kg-1 s-1,"Covariates to include: branchT -Equivalent to units of nmol CO_2 g-1 s-1. If converted from O2 consumption, assume 1 mol O2 = 1 mol CO2. ",2012-01-05 19:31:32,2021-04-27 19:36:15.761476,branch_maintenance_respiration,Infinity,0,,,, +Equivalent to units of nmol CO_2 g-1 s-1. If converted from O2 consumption, assume 1 mol O2 = 1 mol CO2. ",2012-01-05 19:31:32,2021-04-27 19:36:15.761476,branch_maintenance_respiration,,0,,,, 338,"root maintenance respiration, mass basis, at given termperature",umol [CO_2] kg-1 s-1,"Necessary covariates: -rootT root_diameter_min & root_diameter_ max",2012-01-06 21:46:25,2021-04-27 19:37:31.785448,root_maintenance_respiration_rate,Infinity,0,,,, +rootT root_diameter_min & root_diameter_ max",2012-01-06 21:46:25,2021-04-27 19:37:31.785448,root_maintenance_respiration_rate,,0,,,, 349,temperature of stem during measurement,C,covariate,2012-01-12 21:07:13,2021-04-27 19:37:58.4094,stemT,50,-50,,,, 325,Nitrogen content with a branch per dry mass,g [N] g-1 [dry weight],"",2012-01-05 19:45:59,2021-04-27 19:36:44.953457,branchN,1,0,,,, 324,Carbon content per dry mass within a branch,g [C] g-1 [dry weight],"",2012-01-05 19:36:33,2021-04-27 19:36:45.7914,branchC,1,0,,,, 335,catagorical metric of the amount of radiation,"","",2012-01-06 21:01:56,2021-04-27 19:37:24.280291,radiation_class,9,1,,,"categorical [1,2,3,4,5,6,7,8,9]", 356,Temperature during measurement,C,Used when it is not specified if Temp was measured on tissue or air.,2012-02-16 17:32:15,2021-04-27 19:38:19.344929,T,50,-50,,,, -603,"",g m-2,senesced (dead) leaf biomass,2015-11-02 18:30:27.677295,2021-04-27 19:46:31.712076,leaf_dead_biomass,Infinity,0,"","","",ecosystem +603,"",g m-2,senesced (dead) leaf biomass,2015-11-02 18:30:27.677295,2021-04-27 19:46:31.712076,leaf_dead_biomass,,0,"","","",ecosystem 492,extinction_coefficient_diffuse,"","k_d in: I_diffuse = I_diff * exp(-k_d * CumLAI) + I_scat",2013-08-29 21:50:59,2018-04-13 17:34:28.000718,extinction_coefficient_diffuse,1,0,"","",Extinction Coefficient for Diffuse Light,"" -17,Leaf Water Potential,Mpa,"",,2011-06-06 14:40:42,LWP,Infinity,-Infinity,,,, +17,Leaf Water Potential,Mpa,"",,2011-06-06 14:40:42,LWP,,,,,, 225,Radiative transfer clumping factor,0-1,"Clumping factor. This factor indicates the degree of clumpiness of leaves in foliage canopies (i.e. omega parameter in LAI equation) 0 -- black hole 1 -- homogeneous, no clumping -For more info see: Kucharik et al., (1999), Chen et al., (2006) Ag For Met (doi:10.1016/j.agrformet.2008.01.020)",2010-11-23 11:31:33,2015-09-18 14:38:55.266199,clumping_factor,Infinity,-Infinity,"","","", -42,rate of storage pool loss (not temperature dependent),year-1,"",,2011-06-06 14:40:42,storage_turnover_rate,Infinity,-Infinity,,,, -280,dry cane mass per stalk,g,"",2011-03-14 04:17:09,2011-06-06 14:40:42,DM_cane per stalk,Infinity,-Infinity,,,, -281,Dry total biomass per stalk,g,"",2011-03-14 04:24:47,2011-06-06 14:40:42,DM_total biomass per stalk,Infinity,-Infinity,,,, -617,"",kg m-2 s-1,"",2016-10-03 18:27:47.791919,2016-10-03 18:27:47.791919,mesophyll_conductance,Infinity,-Infinity,"","","","" +For more info see: Kucharik et al., (1999), Chen et al., (2006) Ag For Met (doi:10.1016/j.agrformet.2008.01.020)",2010-11-23 11:31:33,2015-09-18 14:38:55.266199,clumping_factor,,,"","","", +42,rate of storage pool loss (not temperature dependent),year-1,"",,2011-06-06 14:40:42,storage_turnover_rate,,,,,, +280,dry cane mass per stalk,g,"",2011-03-14 04:17:09,2011-06-06 14:40:42,DM_cane per stalk,,,,,, +281,Dry total biomass per stalk,g,"",2011-03-14 04:24:47,2011-06-06 14:40:42,DM_total biomass per stalk,,,,,, +617,"",kg m-2 s-1,"",2016-10-03 18:27:47.791919,2016-10-03 18:27:47.791919,mesophyll_conductance,,,"","","","" 4,maximum rubisco carboxylation capacity,umol [CO2] m-2 s-1,"",,2021-04-27 19:23:15.519764,Vcmax,500,0,,,, -312,"",m-2,"",2011-11-28 22:41:32,2011-11-28 22:41:32,Stalk number,Infinity,-Infinity,,,, +312,"",m-2,"",2011-11-28 22:41:32,2011-11-28 22:41:32,Stalk number,,,,,, 293,"",kg m-2 s-1,Updated units from mm s-1 to kg m-2 s-1 to reflect unit standardization,2011-05-26 18:29:12,2017-05-23 20:36:44.43346,stomatal_conductance,200,0,,,, 292,"",g m-2 day-1,"",2011-05-18 18:41:07,2011-06-06 14:40:42,root_production_rate,3000,0,,,, 7,Rd; leaf dark respiration,umol [CO2] m-2 s-1,"Not really ""dark respiration"" Often this is respiration that occurs in the light. Date and time fields ""should"" identify pre-dawn (nightime/dark) leaf resp vs the Rd that comes from a A-Ci or A-PPFD curve",,2021-04-27 19:23:15.519764,leaf_respiration_rate_m2,500,0,,,, -348,"top of the general canopy of the plant, discounting any exceptional branches, leaves or photosynthetic portions of the inflorescence.",m,"p 175 of Pérez-Harguindeguy et al 2013 New handbook for standardised measurement of plant functional traits worldwide. Australian Journal of Botany, 61, 167–234 http://www.publish.csiro.au/?paper=BT12225 doi:10.1071/BT12225",2012-01-12 20:24:21,2017-04-18 22:37:25.691007,canopy_height,Infinity,0,"","","",ecosystem +348,"top of the general canopy of the plant, discounting any exceptional branches, leaves or photosynthetic portions of the inflorescence.",m,"p 175 of Pérez-Harguindeguy et al 2013 New handbook for standardised measurement of plant functional traits worldwide. Australian Journal of Botany, 61, 167–234 http://www.publish.csiro.au/?paper=BT12225 doi:10.1071/BT12225",2012-01-12 20:24:21,2017-04-18 22:37:25.691007,canopy_height,,0,"","","",ecosystem 86,air temperature,degrees C,"",,2015-05-14 14:19:24.075225,airT,60,-50,air_temperature,K,"", -364,"",C,"",2012-03-13 16:48:19,2012-03-13 16:48:19,growth_temperture_night,Infinity,-Infinity,,,, +364,"",C,"",2012-03-13 16:48:19,2012-03-13 16:48:19,growth_temperture_night,,,,,, 6,light and CO2 saturated maximum photosynthetic rate,umol [CO2] m-2 s-1,"Asat is saturated by light, with ambient CO2; see Amax for light + CO2 saturated photosynthesis (https://www.betydb.org/variables/158/). -There isn't a clear convention on this: Asat and Amax definitions are sometimes reversed in the literature. But Asat and Amax are very different. ",,2021-04-27 19:24:31.481955,Amax,Infinity,0,,,, +There isn't a clear convention on this: Asat and Amax definitions are sometimes reversed in the literature. But Asat and Amax are very different. ",,2021-04-27 19:24:31.481955,Amax,,0,,,, 9,Stomatal Conductance,mol [H2O] m-2 s-1,"the flux of H2O out of the leaf, assumed to be the same as the flux of CO2 out of the leaf DUPLICATE. TO BE REMOVED",,2021-04-27 19:24:44.701411,GS,5000,0,"","","", 58,date of bud break,DOY,The date/time stamp is used to indicate the observed date of bud burst,,2021-04-27 19:27:43.072836,date_of_bud_break,365,0,"","","", 158,maximum photosynthetic rate at saturating light,umol [CO2] m-2 s-1,"Asat is saturated by light; see Amax for light and CO2 saturated photosynthesis (https://www.betydb.org/variables/6). -There isn't a clear convention on this: Asat and Amax definitions are sometimes reversed in the literature. But Asat and Amax are very different.",,2021-04-27 19:31:07.036533,Asat,Infinity,0,,,, -260,"",count [number of green leaves per shoot],"",2011-02-28 06:25:44,2021-04-27 19:34:06.752675,leaves_per_shoot_green,Infinity,0,,,, -261,"",count [number of dead leaves per shoot],"",2011-02-28 06:34:03,2021-04-27 19:34:13.5,leaves_per_shoot_dead,Infinity,0,,,, -307,root_respiration rate umol CO2 kg-1 s-1.Excised Roots,umol [CO2] kg-1 s-1,"",2011-10-27 17:00:21,2021-04-27 19:35:27.857727,root_respiration rate umol CO2 kg-1 s-1.Excised Roots,Infinity,-Infinity,,,, -310,root biomass of an individual plant,g [per plant],"root biomass is usually reported per m2, this is for relatively rare exceptions, e.g. when a single plant is grown in a pot.",2011-10-28 16:40:45,2021-04-27 19:35:43.058261,root_biomass_plant,Infinity,-Infinity,"","","","" -313,Canopy Area allometry intercept,m2,Ca = b1Ca * DBH ^ b2Ca,2011-12-13 04:22:51,2021-04-27 19:35:51.325545,b1Ca,Infinity,-Infinity,,,, -314,Canopy Area allometry exponent,"",Ca = b1Ca * DBH ^ b2Ca,2011-12-13 04:23:26,2021-04-27 19:35:54.363213,b2Ca,Infinity,-Infinity,,,, -332,"leaf maintenance respiration on mass basis, at the given temperature",umol [CO2] kg-1 s-1,"Covariates to include: leafT & canopy height (optional). Equivalent to units of nmol CO_2 g-1 s-1. If converted from O2 consumption, assume 1 mol O2 = 1 mol CO2. ",2012-01-06 20:44:45,2021-04-27 19:37:04.045509,leaf_maintenance_respiration_mass,Infinity,0,,,, +There isn't a clear convention on this: Asat and Amax definitions are sometimes reversed in the literature. But Asat and Amax are very different.",,2021-04-27 19:31:07.036533,Asat,,0,,,, +260,"",count [number of green leaves per shoot],"",2011-02-28 06:25:44,2021-04-27 19:34:06.752675,leaves_per_shoot_green,,0,,,, +261,"",count [number of dead leaves per shoot],"",2011-02-28 06:34:03,2021-04-27 19:34:13.5,leaves_per_shoot_dead,,0,,,, +307,root_respiration rate umol CO2 kg-1 s-1.Excised Roots,umol [CO2] kg-1 s-1,"",2011-10-27 17:00:21,2021-04-27 19:35:27.857727,root_respiration rate umol CO2 kg-1 s-1.Excised Roots,,,,,, +310,root biomass of an individual plant,g [per plant],"root biomass is usually reported per m2, this is for relatively rare exceptions, e.g. when a single plant is grown in a pot.",2011-10-28 16:40:45,2021-04-27 19:35:43.058261,root_biomass_plant,,,"","","","" +313,Canopy Area allometry intercept,m2,Ca = b1Ca * DBH ^ b2Ca,2011-12-13 04:22:51,2021-04-27 19:35:51.325545,b1Ca,,,,,, +314,Canopy Area allometry exponent,"",Ca = b1Ca * DBH ^ b2Ca,2011-12-13 04:23:26,2021-04-27 19:35:54.363213,b2Ca,,,,,, +332,"leaf maintenance respiration on mass basis, at the given temperature",umol [CO2] kg-1 s-1,"Covariates to include: leafT & canopy height (optional). Equivalent to units of nmol CO_2 g-1 s-1. If converted from O2 consumption, assume 1 mol O2 = 1 mol CO2. ",2012-01-06 20:44:45,2021-04-27 19:37:04.045509,leaf_maintenance_respiration_mass,,0,,,, 596,Conifer PAR light transmission,[fraction],"",2015-07-14 20:38:20.601398,2021-04-27 19:47:02.404665,leaf_trans_vis,1,0,"","","",model-ED2 597,Conifer NIR light transmission,[fraction],"",2015-07-14 20:38:46.961508,2021-04-27 19:47:02.889492,leaf_trans_nir,1,0,"","","","" 598,"",[fraction],"",2015-07-14 20:39:21.411718,2021-04-27 19:47:03.633766,leaf_trans_nir_hardwood,1,0,"","","","" @@ -278,34 +278,34 @@ There isn't a clear convention on this: Asat and Amax definitions are sometimes 601,"",[fraction],"",2015-07-14 20:44:19.799218,2021-04-27 19:47:05.063912,leaf_reflect_vis_hardwood,1,0,"","","","" 602,"",[fraction],"",2015-07-14 20:44:52.850162,2021-04-27 19:47:05.489397,leaf_reflect_nir_hardwood,1,0,"","","","" 595,"",[fraction],"",2015-07-14 20:37:44.112078,2021-04-27 19:47:00.897432,leaf_trans_vis_hardwood,1,0,"","","",model-ED2 -613,height of plant from ground to apical meristem.,m,"",2016-05-18 15:53:02.990566,2017-02-20 21:29:13.67457,apical_meristem_height,Infinity,-Infinity,"","","","" -48,see two-stream radiation model,per mil,"",,2011-06-06 14:40:42,emis_v,Infinity,-Infinity,,,, -50,"for grasses, stem internode length",mm,"",,2011-06-06 14:40:42,internode_length,Infinity,0,,,, -365,"",Wh m-2,"",2012-03-13 16:48:47,2012-03-13 16:48:47,light,Infinity,-Infinity,,,, -366,"",hours,"",2012-03-13 16:49:58,2012-03-13 16:49:58,night_length,Infinity,-Infinity,,,, -317,age of root being measured,year,used as covariate when root age is given. ,2012-01-05 18:23:53,2012-01-05 18:23:53,root_age,Infinity,-Infinity,,,, -352,Root respiration Trenched Plot,"","",2012-01-18 21:09:11,2012-01-18 21:09:11,Root respiration Trenched Plot,Infinity,-Infinity,,,, -357,"","","",2012-03-13 16:39:34,2012-03-13 16:39:34,burned,Infinity,-Infinity,,,, -358,"",ppm,"",2012-03-13 16:41:32,2012-03-13 16:41:32,co2_fumigation,Infinity,-Infinity,,,, -359,"",hours,"",2012-03-13 16:42:16,2012-03-13 16:42:16,day_length,Infinity,-Infinity,,,, -360,"",days,"",2012-03-13 16:42:52,2012-03-13 16:42:52,exposition_period,Infinity,-Infinity,,,, -361,"",boolean,"",2012-03-13 16:44:07,2012-03-13 16:46:11,fertilization_P,Infinity,-Infinity,,,, -363,"",C,"",2012-03-13 16:47:19,2012-03-13 16:48:06,growth_temperture_daytime,Infinity,-Infinity,,,, -367,"","","",2012-03-13 16:50:50,2012-03-13 16:50:50,o3_fumigation,Infinity,-Infinity,,,, -369,"","","",2012-03-13 16:51:54,2012-03-13 16:51:54,cultivated,Infinity,-Infinity,,,, -370,"","","",2012-03-13 16:52:19,2012-03-13 16:52:19,disturbance,Infinity,-Infinity,,,, -371,"","","",2012-03-13 16:52:46,2012-03-13 16:52:46,fertilization_notspecified,Infinity,-Infinity,,,, -372,"","","",2012-03-13 16:53:45,2012-03-13 16:53:45,herbivore_damage,Infinity,-Infinity,,,, -373,"","","",2012-03-13 16:54:18,2012-03-13 16:54:18,irrigation,Infinity,-Infinity,,,, -374,"","","",2012-03-13 16:54:44,2012-03-13 16:54:44,mowing,Infinity,-Infinity,,,, -375,"","","",2012-03-13 16:58:33,2012-03-13 16:58:33,crown_volume,Infinity,-Infinity,,,, -376,"",delta15n,"",2012-03-13 16:59:40,2012-03-13 16:59:40,soil_delta15N,Infinity,-Infinity,,,, -578,Subsoil USDA Texture Classification,name,"",2015-05-14 20:09:57.428275,2015-05-14 20:09:57.428275,s_usda_tex,Infinity,-Infinity,"","","", -579,Topsoil USDA Texture Classification,name,"",2015-05-14 20:10:33.127676,2015-05-14 20:10:33.127676,t_usda_tex,Infinity,-Infinity,"","","", -51,"mean tilt angle, inclination angle of the leaf tip (erect = 90 degrees)",degrees,"",,2011-06-06 14:40:42,MTA,Infinity,-Infinity,,,, -75,decomposition rate of litter,year-1,"",,2011-06-06 14:40:42,turn_over_time,Infinity,-Infinity,,,, -83,Irradiance (photosynthetic photon flux density),umol m-2 s-1,"",,2011-06-06 14:40:42,irradiance,Infinity,0,,,, -87,minimum stem length,cm,"",,2011-06-06 14:40:42,length_stem_minimum,Infinity,0,,,, +613,height of plant from ground to apical meristem.,m,"",2016-05-18 15:53:02.990566,2017-02-20 21:29:13.67457,apical_meristem_height,,,"","","","" +48,see two-stream radiation model,per mil,"",,2011-06-06 14:40:42,emis_v,,,,,, +50,"for grasses, stem internode length",mm,"",,2011-06-06 14:40:42,internode_length,,0,,,, +365,"",Wh m-2,"",2012-03-13 16:48:47,2012-03-13 16:48:47,light,,,,,, +366,"",hours,"",2012-03-13 16:49:58,2012-03-13 16:49:58,night_length,,,,,, +317,age of root being measured,year,used as covariate when root age is given. ,2012-01-05 18:23:53,2012-01-05 18:23:53,root_age,,,,,, +352,Root respiration Trenched Plot,"","",2012-01-18 21:09:11,2012-01-18 21:09:11,Root respiration Trenched Plot,,,,,, +357,"","","",2012-03-13 16:39:34,2012-03-13 16:39:34,burned,,,,,, +358,"",ppm,"",2012-03-13 16:41:32,2012-03-13 16:41:32,co2_fumigation,,,,,, +359,"",hours,"",2012-03-13 16:42:16,2012-03-13 16:42:16,day_length,,,,,, +360,"",days,"",2012-03-13 16:42:52,2012-03-13 16:42:52,exposition_period,,,,,, +361,"",boolean,"",2012-03-13 16:44:07,2012-03-13 16:46:11,fertilization_P,,,,,, +363,"",C,"",2012-03-13 16:47:19,2012-03-13 16:48:06,growth_temperture_daytime,,,,,, +367,"","","",2012-03-13 16:50:50,2012-03-13 16:50:50,o3_fumigation,,,,,, +369,"","","",2012-03-13 16:51:54,2012-03-13 16:51:54,cultivated,,,,,, +370,"","","",2012-03-13 16:52:19,2012-03-13 16:52:19,disturbance,,,,,, +371,"","","",2012-03-13 16:52:46,2012-03-13 16:52:46,fertilization_notspecified,,,,,, +372,"","","",2012-03-13 16:53:45,2012-03-13 16:53:45,herbivore_damage,,,,,, +373,"","","",2012-03-13 16:54:18,2012-03-13 16:54:18,irrigation,,,,,, +374,"","","",2012-03-13 16:54:44,2012-03-13 16:54:44,mowing,,,,,, +375,"","","",2012-03-13 16:58:33,2012-03-13 16:58:33,crown_volume,,,,,, +376,"",delta15n,"",2012-03-13 16:59:40,2012-03-13 16:59:40,soil_delta15N,,,,,, +578,Subsoil USDA Texture Classification,name,"",2015-05-14 20:09:57.428275,2015-05-14 20:09:57.428275,s_usda_tex,,,"","","", +579,Topsoil USDA Texture Classification,name,"",2015-05-14 20:10:33.127676,2015-05-14 20:10:33.127676,t_usda_tex,,,"","","", +51,"mean tilt angle, inclination angle of the leaf tip (erect = 90 degrees)",degrees,"",,2011-06-06 14:40:42,MTA,,,,,, +75,decomposition rate of litter,year-1,"",,2011-06-06 14:40:42,turn_over_time,,,,,, +83,Irradiance (photosynthetic photon flux density),umol m-2 s-1,"",,2011-06-06 14:40:42,irradiance,,0,,,, +87,minimum stem length,cm,"",,2011-06-06 14:40:42,length_stem_minimum,,0,,,, 49,fraction of litter that is goes into the labile carbon pool,fraction,"",,2011-06-06 14:40:42,f_labile,1,0,,,, 52,height,m,"",,2011-06-06 14:40:42,height,120,0,,,, 59,dates of bud set,DOY,"",,2011-06-06 14:40:42,date_of_bud_set,365,0,,,, @@ -314,74 +314,74 @@ There isn't a clear convention on this: Asat and Amax definitions are sometimes 71,foliar K concentration,percent,"",,2011-06-06 14:40:42,leafK,100,0,,,, 72,foliar calcium concentration,percent,"",,2011-06-06 14:40:42,leafCa,100,0,,,, 73,foliar magnesium concentraion,percent,"",,2011-06-06 14:40:42,leafMg,100,0,,,, -412,gravimetric soil water content: g H2O/ g DRY soil,g-1 [H2O] g-1 [DRY soil],expressed as H2O mass relative to mass of DRY soil.,2012-06-11 19:47:24,2021-04-27 19:40:20.795224,SWC_gravimetric: g H2O / g DRY soil,Infinity,-Infinity,,,, +412,gravimetric soil water content: g H2O/ g DRY soil,g-1 [H2O] g-1 [DRY soil],expressed as H2O mass relative to mass of DRY soil.,2012-06-11 19:47:24,2021-04-27 19:40:20.795224,SWC_gravimetric: g H2O / g DRY soil,,,,,, 80,"location in canopy as a percentage of the distance from the lowest leaf to the highest leaf; 0 is the bottom of the canopy, 1 is the top, canopy_layer = height of observation / (max leaf height - min leaf height)",percent,"",,2011-06-06 14:40:42,canopy_layer,100,0,,,, 82,percent ambient sunlight,percent,"",,2011-06-06 14:40:42,perc_sun,100,0,,,, 85,mean annual temperature,degrees C,"",,2011-06-06 14:40:42,MAT,30,-50,,,, 88,in vitro dry matter digestibility in leaf,percent,"",,2011-06-06 14:40:42,IVDMDL,100,0,,,, 89,in vitro dry matter digestibility in stem,percent,"",,2011-06-06 14:40:42,IVDMDS,100,0,,,, -378,lifespan of a root,yr,inverse of root_turnover_rate,2012-03-16 19:53:54,2012-03-16 19:53:54,root_longevity,Infinity,-Infinity,,,, -55,total aboveground biomass,Mg ha-1,"",,2021-04-27 19:27:29.003975,shoot_biomass,Infinity,0,,,, +378,lifespan of a root,yr,inverse of root_turnover_rate,2012-03-16 19:53:54,2012-03-16 19:53:54,root_longevity,,,,,, +55,total aboveground biomass,Mg ha-1,"",,2021-04-27 19:27:29.003975,shoot_biomass,,0,,,, 79,degrees north or south of equator,degrees,"",,2021-04-27 19:28:48.519799,abslat,90,-90,,,, -330,whole plant aboveground nitrogen pool (vegetation),g [N] [per plant],"",2012-01-06 20:31:38,2021-04-27 19:36:58.208404,plantN,Infinity,-Infinity,,,, -362,"",mg [N] g-1 [dry weight]day,"",2012-03-13 16:46:26,2021-04-27 19:38:38.494527,fertilization_N,Infinity,-Infinity,,,, -377,"",mol m-3,"",2012-03-13 17:00:30,2021-04-27 19:38:57.130635,soilO2,Infinity,-Infinity,,,, -379,soil Temp,C,"",2012-03-30 20:32:50,2021-04-27 19:38:59.641758,soilT,Infinity,-Infinity,,,, +330,whole plant aboveground nitrogen pool (vegetation),g [N] [per plant],"",2012-01-06 20:31:38,2021-04-27 19:36:58.208404,plantN,,,,,, +362,"",mg [N] g-1 [dry weight]day,"",2012-03-13 16:46:26,2021-04-27 19:38:38.494527,fertilization_N,,,,,, +377,"",mol m-3,"",2012-03-13 17:00:30,2021-04-27 19:38:57.130635,soilO2,,,,,, +379,soil Temp,C,"",2012-03-30 20:32:50,2021-04-27 19:38:59.641758,soilT,,,,,, 575,Topsoil Sand Fraction,percent [by weight],"",2015-05-14 20:07:36.539275,2021-04-27 19:45:58.053916,t_sand,100,0,"","","", 576,Topsoil Silt Fraction,percent [by weight],"",2015-05-14 20:07:55.677059,2021-04-27 19:45:59.720583,t_silt,100,0,"","","", 577,Topsoil Clay Fraction,percent [by weight],"",2015-05-14 20:08:13.986077,2021-04-27 19:46:00.435518,t_clay,100,0,"","","", -580,Subsoil Sand Fraction,percent [by weight],"",2015-05-14 20:10:33.127676,2021-04-27 19:46:02.504766,s_sand,Infinity,-Infinity,,,, +580,Subsoil Sand Fraction,percent [by weight],"",2015-05-14 20:10:33.127676,2021-04-27 19:46:02.504766,s_sand,,,,,, 590,Subsoil Clay Fraction,percent [by weight],"",2015-05-14 20:10:33.127676,2021-04-27 19:46:15.929772,s_clay,100,0,,,, 591,Subsoil Silt Fraction,percent [by weight],"",2015-05-14 20:10:33.127676,2021-04-27 19:46:17.382879,s_silt,100,0,,,, 421,Structural biomass (ecosystem),Mg ha-1,"Structural biomass- whole plant excluding fine roots and foliage. Ecosystem level. -Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-12 16:40:58,2012-07-06 20:36:17,Biomass_structural,Infinity,-Infinity,,,, -380,The activation energy for Vcmax (Ev) derived from an Arrhenius model,kJ mol-1,"The activation energy for Vcmax (Ev) derived from an Arrhenius model. This parameter is used to scale the value of Vcmax at the measurement temperature to an estimated value at another temperature based on the exponential form of the Arrhenius model: f(Tk) = Vcmax25*exp[(Ev*(Tk-298.15))/(298.15*R*Tk)]; where Tk is the leaf temperature in Kelvin, Vcmax25 is the value of Vcmax at 25 degC, and R is the ideal gas constant. When entered into BETY the Vcmax value at 25 degC should be entered as a covariate. E.g. Vcmax25: 97.76, Ev: 54.08.",2012-04-10 21:40:02,2012-04-10 21:45:24,Ev_Arrhenius,Infinity,-Infinity,,,, -382,Years in common era,year,"",2012-05-02 18:17:47,2012-05-02 18:19:33,year,Infinity,-Infinity,,,, -383,Day of Year,DOY,"",2012-05-02 18:18:20,2012-05-02 18:19:20,day,Infinity,-Infinity,,,, -384,Time of day in hours,hours,"",2012-05-02 18:18:44,2012-05-02 18:18:57,hour,Infinity,-Infinity,,,, +Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-12 16:40:58,2012-07-06 20:36:17,Biomass_structural,,,,,, +380,The activation energy for Vcmax (Ev) derived from an Arrhenius model,kJ mol-1,"The activation energy for Vcmax (Ev) derived from an Arrhenius model. This parameter is used to scale the value of Vcmax at the measurement temperature to an estimated value at another temperature based on the exponential form of the Arrhenius model: f(Tk) = Vcmax25*exp[(Ev*(Tk-298.15))/(298.15*R*Tk)]; where Tk is the leaf temperature in Kelvin, Vcmax25 is the value of Vcmax at 25 degC, and R is the ideal gas constant. When entered into BETY the Vcmax value at 25 degC should be entered as a covariate. E.g. Vcmax25: 97.76, Ev: 54.08.",2012-04-10 21:40:02,2012-04-10 21:45:24,Ev_Arrhenius,,,,,, +382,Years in common era,year,"",2012-05-02 18:17:47,2012-05-02 18:19:33,year,,,,,, +383,Day of Year,DOY,"",2012-05-02 18:18:20,2012-05-02 18:19:20,day,,,,,, +384,Time of day in hours,hours,"",2012-05-02 18:18:44,2012-05-02 18:18:57,hour,,,,,, 109,starch in leaf,percent,"",,2011-06-06 14:40:42,leaf_starch,100,0,,,, 110,starch in stem,percent,"",,2011-06-06 14:40:42,stem_starch,100,0,,,, -414,Total root biomass (all root sizes),Mg ha-1,"covariates: depth, root_diameter_min, root_diameter_max",2012-06-11 21:42:27,2016-05-26 19:14:10.064813,biomass_root_total,Infinity,-Infinity,"","","","" -393,Annual soil respiration,Mg [C] ha-1 yr-1,"",2012-05-16 22:46:30,2021-04-27 19:39:15.828216,Rsoil_annual,Infinity,-Infinity,,,, +414,Total root biomass (all root sizes),Mg ha-1,"covariates: depth, root_diameter_min, root_diameter_max",2012-06-11 21:42:27,2016-05-26 19:14:10.064813,biomass_root_total,,,"","","","" +393,Annual soil respiration,Mg [C] ha-1 yr-1,"",2012-05-16 22:46:30,2021-04-27 19:39:15.828216,Rsoil_annual,,,,,, 117,variant dry matter in shoot,percent,"",,2011-06-06 14:40:42,shoot_variant_DM,100,0,,,, -385,interval of time,days,"",2012-05-02 18:19:59,2012-05-02 18:19:59,timestep,Infinity,-Infinity,,,, -386,Total accumulate PAR,einsteins m-2,"",2012-05-02 18:20:48,2012-05-02 18:20:48,accum_PAR,Infinity,-Infinity,,,, -387,Vapor Pressure Deficit,Pa,VPD = saturation vapor pressure (E_s) - vapor pressure (E_a),2012-05-02 18:21:23,2012-05-02 18:21:23,VPD,Infinity,-Infinity,,,, -388,Vapor pressure deficit of soil,Pa,saturation vapor pressure (e_s(Tsoil)) - vapor pressure of air immediately above soil,2012-05-02 18:22:31,2012-05-02 18:22:31,VPD_soil,Infinity,-Infinity,,,, -389,vapor pressure,Pa,Atmospheric vapor pressure in Pascals,2012-05-02 18:23:01,2012-05-02 18:23:01,e_a,Infinity,-Infinity,,,, -396,fine root biomass,Mg ha-1,"covariates: depth, root_diameter_min, root_diameter_max",2012-05-16 23:17:09,2012-06-22 18:01:21,Biomass_root_fine,Infinity,-Infinity,,,, -397,"","",for multiple measurements that are reported as one measurement in the bety.,2012-05-22 20:31:53,2012-05-22 20:31:53,measurement_date,Infinity,-Infinity,,,, -398,starting date of observation/measurements of traits/yields.,"","",2012-05-24 20:01:10,2012-09-13 21:03:32,start_date,Infinity,-Infinity,,,, -399,date when the last measurements of traits/yields were made,"","",2012-05-24 20:02:01,2012-05-24 20:02:01,end-date,Infinity,-Infinity,,,, -402,Plant Leaf CO2 level,ubar,"",2012-05-29 16:26:13,2012-06-01 18:16:46,CO2_concentration,Infinity,-Infinity,,,, -406,"",kPa,"",2012-06-07 03:04:41,2012-06-07 03:04:41,soil water tension,Infinity,-Infinity,,,, +385,interval of time,days,"",2012-05-02 18:19:59,2012-05-02 18:19:59,timestep,,,,,, +386,Total accumulate PAR,einsteins m-2,"",2012-05-02 18:20:48,2012-05-02 18:20:48,accum_PAR,,,,,, +387,Vapor Pressure Deficit,Pa,VPD = saturation vapor pressure (E_s) - vapor pressure (E_a),2012-05-02 18:21:23,2012-05-02 18:21:23,VPD,,,,,, +388,Vapor pressure deficit of soil,Pa,saturation vapor pressure (e_s(Tsoil)) - vapor pressure of air immediately above soil,2012-05-02 18:22:31,2012-05-02 18:22:31,VPD_soil,,,,,, +389,vapor pressure,Pa,Atmospheric vapor pressure in Pascals,2012-05-02 18:23:01,2012-05-02 18:23:01,e_a,,,,,, +396,fine root biomass,Mg ha-1,"covariates: depth, root_diameter_min, root_diameter_max",2012-05-16 23:17:09,2012-06-22 18:01:21,Biomass_root_fine,,,,,, +397,"","",for multiple measurements that are reported as one measurement in the bety.,2012-05-22 20:31:53,2012-05-22 20:31:53,measurement_date,,,,,, +398,starting date of observation/measurements of traits/yields.,"","",2012-05-24 20:01:10,2012-09-13 21:03:32,start_date,,,,,, +399,date when the last measurements of traits/yields were made,"","",2012-05-24 20:02:01,2012-05-24 20:02:01,end-date,,,,,, +402,Plant Leaf CO2 level,ubar,"",2012-05-29 16:26:13,2012-06-01 18:16:46,CO2_concentration,,,,,, +406,"",kPa,"",2012-06-07 03:04:41,2012-06-07 03:04:41,soil water tension,,,,,, 417,Foliage biomass,Mg ha-1,"Foliage biomass -Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-12 16:25:33,2012-07-06 20:35:23,Biomass_foliage,Infinity,-Infinity,,,, +Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-12 16:25:33,2012-07-06 20:35:23,Biomass_foliage,,,,,, 418,Aboveground structural biomass,Mg ha-1,"Aboveground structural (stem + branch) biomass -Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-12 16:27:16,2012-07-06 20:37:43,Biomass_ags,Infinity,-Infinity,,,, -394,annual heterotrophic soil respiration,Mg [C] ha-1 yr-1,"",2012-05-16 22:47:08,2021-04-27 19:39:17.470724,Rsoil_het_annual,Infinity,-Infinity,,,, +Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-12 16:27:16,2012-07-06 20:37:43,Biomass_ags,,,,,, +394,annual heterotrophic soil respiration,Mg [C] ha-1 yr-1,"",2012-05-16 22:47:08,2021-04-27 19:39:17.470724,Rsoil_het_annual,,,,,, 395,Annual fine root respiration,Mg [C] ha-1 yr-1,"Estimated by multiplying root specific respiration rates by fine root biomass. -Covariates: Depth, root_diameter_max",2012-05-16 22:55:39,2021-04-27 19:39:18.075728,Rroot_fine_annual,Infinity,-Infinity,,,, -401,Plant Leaf CO2 level,ul l-1,"",2012-05-25 17:58:27,2021-04-27 19:39:30.218136,CO2_concentration,Infinity,-Infinity,,,, -403,Plant Leaf CO2 level,ml m-3,"",2012-06-01 16:04:02,2021-04-27 19:39:36.180524,CO2_concentration,Infinity,-Infinity,,,, +Covariates: Depth, root_diameter_max",2012-05-16 22:55:39,2021-04-27 19:39:18.075728,Rroot_fine_annual,,,,,, +401,Plant Leaf CO2 level,ul l-1,"",2012-05-25 17:58:27,2021-04-27 19:39:30.218136,CO2_concentration,,,,,, +403,Plant Leaf CO2 level,ml m-3,"",2012-06-01 16:04:02,2021-04-27 19:39:36.180524,CO2_concentration,,,,,, 407,"",Mg ha-1 yr-1,"Fine root biomass production (note that units are biomass, not carbon). -Covariates: depth, root diameter",2012-06-08 20:53:10,2021-04-27 19:39:50.95605,BNPP_fine root,Infinity,0,,,, +Covariates: depth, root diameter",2012-06-08 20:53:10,2021-04-27 19:39:50.95605,BNPP_fine root,,0,,,, 409,foliage NPP,Mg [C] ha-1 yr-1,"Foliage NPP: net annual production of leaves or needles determined by collecting leaf/needle fall throughout the year -",2012-06-09 22:18:37,2021-04-27 19:39:57.397447,ANPP_foliage_C,Infinity,-Infinity,,,, +",2012-06-09 22:18:37,2021-04-27 19:39:57.397447,ANPP_foliage_C,,,,,, 411,Total NPP_level 1,Mg [C] ha-1 yr-1,"Total NPP, including foliage, branch, stem, coarse root, and fine root. NPP_1= NPP_foliage +NPP_woody + NPP_fine root (see Lussaert et al. 2007) -",2012-06-09 22:24:56,2021-04-27 19:40:00.451393,NPP_1_C,Infinity,-Infinity,,,, -413,Fine root C stocks,Mg [C] ha-1,"covariates: depth, root_diameter_min, root_diameter_max",2012-06-11 21:27:39,2021-04-27 19:40:24.957164,C_root_fine,Infinity,-Infinity,,,, +",2012-06-09 22:24:56,2021-04-27 19:40:00.451393,NPP_1_C,,,,,, +413,Fine root C stocks,Mg [C] ha-1,"covariates: depth, root_diameter_min, root_diameter_max",2012-06-11 21:27:39,2021-04-27 19:40:24.957164,C_root_fine,,,,,, 416,Total root respiration (all size classes),mg [CO2] m-2 h-1,"Root respiration (all size classes). Note methodology: root gas exchange/ root exclusion/ isotopes. -When estimated through root gas exchange: Depth, root_diameter_max.",2012-06-12 15:45:01,2021-04-27 19:40:30.281978,root_respiration_m2,Infinity,-Infinity,,,, +When estimated through root gas exchange: Depth, root_diameter_max.",2012-06-12 15:45:01,2021-04-27 19:40:30.281978,root_respiration_m2,,,,,, 419,Aboveground biomass,Mg ha-1,"Aboveground biomass (Biomass_ag= Biomass_ags+Biomass_foliage) -Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-12 16:29:36,2012-07-06 20:38:20,Biomass_ag,Infinity,-Infinity,,,, +Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-12 16:29:36,2012-07-06 20:38:20,Biomass_ag,,,,,, 427,total root NPP,Mg ha-1 yr-1,"Total root production determined by repeated soil coring, isotopic estimates of fine-root turnover combined with biomass measurements, ingrowth cores, upscaled root-length production observed in minirhizotrons or the soil @@ -389,167 +389,167 @@ respiration and litterfall constraint formulated by Raich & Nadelhoffer (1989). REQUIRED COVARIATE: depth (cm) -",2012-06-15 03:40:01,2012-06-15 03:40:59,BNPP_root,Infinity,-Infinity,,,, +",2012-06-15 03:40:01,2012-06-15 03:40:59,BNPP_root,,,,,, 429,aboveground stem NPP (excludes branches),Mg ha-1 yr-1,"Stem NPP: annual stem increment were determined using species- and region-specific allometric equations relating aboveground woody biomass increment to the change in basal area of individual trees in the plot -",2012-06-15 05:27:08,2012-06-15 05:28:54,ANPP_stem,Infinity,-Infinity,,,, +",2012-06-15 05:27:08,2012-06-15 05:28:54,ANPP_stem,,,,,, 430,aboveground woody NPP (stem & branches),Mg ha-1 yr-1,"Woody NPP: annual stem and branch increment were determined using species- and region-specific allometric equations relating aboveground woody biomass increment to the change in basal area of individual trees in the plot -",2012-06-15 05:28:08,2012-06-15 05:28:08,ANPP_woody,Infinity,-Infinity,,,, +",2012-06-15 05:28:08,2012-06-15 05:28:08,ANPP_woody,,,,,, 431,coarse root NPP,Mg ha-1 yr-1,"Coarse-root annual production determined through species- and region-specific allometric equations relating root mass to basal area -REQUIRED COVARIATES: Depth, root_diameter_min",2012-06-15 05:30:52,2012-06-15 05:30:52,BNPP_coarse root,Infinity,-Infinity,,,, -443,Max height at which photosynthesis begins,m,Represents the minimum height at which a plant can be represented by ED. Conceptually represents the maximum height that can be assumed by a plant before it begins photosynthesis.,2012-07-03 20:56:51,2012-07-03 20:57:03,hgt_min,Infinity,-Infinity,,,, +REQUIRED COVARIATES: Depth, root_diameter_min",2012-06-15 05:30:52,2012-06-15 05:30:52,BNPP_coarse root,,,,,, +443,Max height at which photosynthesis begins,m,Represents the minimum height at which a plant can be represented by ED. Conceptually represents the maximum height that can be assumed by a plant before it begins photosynthesis.,2012-07-03 20:56:51,2012-07-03 20:57:03,hgt_min,,,,,, 444,Annual external seed input,1 m-2 yr-1,"ED specific parameter. The number of seeds per unit area that come from plants outside a patch and go on to become seedlings of a given height specified by hgt_min. Note: mislabeled in some documentation as ""kgC/m-2/year"". -",2012-07-04 01:49:06,2012-07-04 06:29:30,seed_rain,Infinity,-Infinity,,,, -422,Total biomass,Mg ha-1,Total biomass- ecosystem level.,2012-06-12 16:41:39,2012-06-12 16:41:39,Biomass_total,Infinity,-Infinity,,,, +",2012-07-04 01:49:06,2012-07-04 06:29:30,seed_rain,,,,,, +422,Total biomass,Mg ha-1,Total biomass- ecosystem level.,2012-06-12 16:41:39,2012-06-12 16:41:39,Biomass_total,,,,,, 424,Cumulative GPP over a specified time step,Mg C ha-1 [timestep-1],"Cumulative GPP over a specified time frame. Sign convention: positive. Specify start and end times. -REQUIRED COVARIATE: timestep (days).",2012-06-13 19:40:22,2021-04-27 19:40:48.09751,GPP_cum,Infinity,-Infinity,,,, +REQUIRED COVARIATE: timestep (days).",2012-06-13 19:40:22,2021-04-27 19:40:48.09751,GPP_cum,,,,,, 425,Cumulative ecosystem respiration over a specified time step,Mg C ha-1 [timestep-1],"Cumulative ecosystem respiration over a specified time frame (measured using eddy-covariance or gas exchange in a closed chamber). Sign convention: positive. Specify start and end date. -REQUIRED COVARIATE: timestep (days)",2012-06-13 19:46:07,2021-04-27 19:40:50.168365,Reco_cum,Infinity,-Infinity,,,, -426,Net N mineralization,Kg [N] ha-1 yr-1,"",2012-06-14 15:06:46,2021-04-27 19:40:54.994059,N_mineralization,Infinity,-Infinity,,,, -434,Leaf carbon concentration,g [C] g-1 [dry weight],"",2012-06-21 15:15:40,2021-04-27 19:41:07.206175,leafC-mass-fraction,Infinity,-Infinity,"","","", +REQUIRED COVARIATE: timestep (days)",2012-06-13 19:46:07,2021-04-27 19:40:50.168365,Reco_cum,,,,,, +426,Net N mineralization,Kg [N] ha-1 yr-1,"",2012-06-14 15:06:46,2021-04-27 19:40:54.994059,N_mineralization,,,,,, +434,Leaf carbon concentration,g [C] g-1 [dry weight],"",2012-06-21 15:15:40,2021-04-27 19:41:07.206175,leafC-mass-fraction,,,"","","", 435,Aboveground biomass C,Mg [C] ha-1,"Aboveground biomass carbon (C_ag= C_ags+C_foliage). Dead wood excluded. -Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-29 19:22:21,2021-04-27 19:41:11.927501,C_ag,Infinity,-Infinity,,,, -436,Dead wood C,Mg [C] ha-1,Dead wood (includes standing and coarse woody debris),2012-06-29 19:30:57,2021-04-27 19:41:13.79685,C_deadwood,Infinity,-Infinity,,,, +Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-29 19:22:21,2021-04-27 19:41:11.927501,C_ag,,,,,, +436,Dead wood C,Mg [C] ha-1,Dead wood (includes standing and coarse woody debris),2012-06-29 19:30:57,2021-04-27 19:41:13.79685,C_deadwood,,,,,, 437,Total biomass C,Mg [C] ha-1,"Total above- and below-ground C in live trees. -Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-29 19:42:49,2021-04-27 19:41:14.350544,C_biomass_total,Infinity,-Infinity,,,, +Covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-06-29 19:42:49,2021-04-27 19:41:14.350544,C_biomass_total,,,,,, 438,Organic layer C,Mg [C] ha-1,"C in organic layer/ forest floor. -",2012-06-29 19:45:59,2021-04-27 19:41:14.815219,C_organic layer,Infinity,-Infinity,,,, +",2012-06-29 19:45:59,2021-04-27 19:41:14.815219,C_organic layer,,,,,, 439,soil organic carbon,Mg [C] ha-1 [cm-1],"Soil organic carbon mass -required covariate: depth (cm)",2012-06-29 19:49:49,2021-04-27 19:41:27.24543,SOC,Infinity,-Infinity,,,, +required covariate: depth (cm)",2012-06-29 19:49:49,2021-04-27 19:41:27.24543,SOC,,,,,, 440,Total ecosystem C,Mg [C] ha-1,"Includes total biomass, deadwood, organic layer, and soil organic C -required covariate: Depth (in mineral soil) to which SOC is measured (cm).",2012-06-29 20:02:19,2021-04-27 19:41:32.284567,Total ecosystem C,Infinity,-Infinity,,,, -441,total chlorophyll content,mg cm-2,"",2012-07-02 20:04:23,2021-04-27 19:41:37.716508,Total_chlorophyll,Infinity,-Infinity,,,, -445,aboveground NPP (C),Mg [C] ha-1 yr-1,total vascular plant NPP,2012-07-06 02:51:34,2021-04-27 19:41:45.699327,ANPP_C,Infinity,-Infinity,,,, +required covariate: Depth (in mineral soil) to which SOC is measured (cm).",2012-06-29 20:02:19,2021-04-27 19:41:32.284567,Total ecosystem C,,,,,, +441,total chlorophyll content,mg cm-2,"",2012-07-02 20:04:23,2021-04-27 19:41:37.716508,Total_chlorophyll,,,,,, +445,aboveground NPP (C),Mg [C] ha-1 yr-1,total vascular plant NPP,2012-07-06 02:51:34,2021-04-27 19:41:45.699327,ANPP_C,,,,,, 446,belowground NPP (C),Mg [C] ha-1 yr-1,"Root biomass production determined by repeated soil coring, isotopic estimates of fine-root turnover combined with biomass measurements, root ingrowth cores, upscaled root-length production observed in minirhizotrons or the soil respiration and litterfall constraint formulated by Raich & Nadelhoffer (1989) -COVARIATE: depth",2012-07-06 02:54:45,2021-04-27 19:41:47.30191,BNPP_root_C,Infinity,-Infinity,,,, +COVARIATE: depth",2012-07-06 02:54:45,2021-04-27 19:41:47.30191,BNPP_root_C,,,,,, 447,aboveground woody NPP (stem & branches): C,Mg [C] ha-1 yr-1,"Woody NPP: annual stem and branch increment determined using species- and region-specific allometric equations relating aboveground woody biomass increment to the change in basal area of individual trees in the plot -",2012-07-06 02:58:38,2021-04-27 19:41:47.75777,ANPP_woody_C,Infinity,-Infinity,,,, +",2012-07-06 02:58:38,2021-04-27 19:41:47.75777,ANPP_woody_C,,,,,, 448,NPP-level 2,Mg [C] ha-1 yr-1,"Total NPP, including foliage, branch, stem, coarse root, and fine root, AND UNDERSTORY. (TNPP2=TNPP1 + understory NPP) -",2012-07-06 03:05:37,2021-04-27 19:41:51.790456,NPP_2_C,Infinity,-Infinity,,,, +",2012-07-06 03:05:37,2021-04-27 19:41:51.790456,NPP_2_C,,,,,, 449,Annual NEE,Mg [C] ha-1 yr-1,"Annual net ecosystem exchange (measured using eddy-covariance or gas exchange in a closed chamber). Sign convention: negative indicates C uptake -",2012-07-06 03:22:36,2021-04-27 19:41:52.967275,NEE_annual,Infinity,-Infinity,,,, -450,Annual ecosystem respiration,Mg [C] ha-1 yr-1,Annual ecosystem respiration (measured using eddy-covariance or gas exchange in a closed chamber). Sign convention: positive.,2012-07-06 03:23:46,2021-04-27 19:41:53.909786,Reco_annual,Infinity,-Infinity,,,, -451,Annual GPP (C),Mg [C] ha-1 yr-1,Annual gross primary production,2012-07-06 03:25:02,2021-04-27 19:41:54.549543,GPP_C_annual,Infinity,-Infinity,,,, -455,minimum dbh measured,cm,DBH of smallest trees included in estimate. = 0 when all plants are included.,2012-07-06 20:42:34,2012-07-06 20:42:34,min dbh,Infinity,-Infinity,,,, -456,Average daily max photosynthesis as fraction of Amax (no units),fraction,A SIPNET variable.,2012-07-16 22:36:30,2012-07-16 22:36:30,AmaxFrac,Infinity,-Infinity,,,, -470,Annual Evapotranspiraiton,mm y-1,"If measured for part of year (e.g. growing season ET), add start date and end date as covariates.",2012-09-12 18:20:30,2012-09-13 20:39:08,AET,Infinity,-Infinity,,,, -472,Plant Transpiration,mm y-1,"By definition, refers to the growing season (otherwise plants do not transpire). If available, add start date and end date as covariates.",2012-09-13 20:40:07,2012-09-13 20:40:07,Transpiration,Infinity,-Infinity,,,, -479,"",umol m-2 s-1,"",2013-01-07 05:25:30,2013-01-07 05:27:10,Soil Respiration,Infinity,-Infinity,,,, -480,Live and Dead fine root biomass,Mg ha-1,"",2013-01-14 20:03:42,2013-01-14 20:03:42,biomass_root_fine_live&dead,Infinity,-Infinity,,,, +",2012-07-06 03:22:36,2021-04-27 19:41:52.967275,NEE_annual,,,,,, +450,Annual ecosystem respiration,Mg [C] ha-1 yr-1,Annual ecosystem respiration (measured using eddy-covariance or gas exchange in a closed chamber). Sign convention: positive.,2012-07-06 03:23:46,2021-04-27 19:41:53.909786,Reco_annual,,,,,, +451,Annual GPP (C),Mg [C] ha-1 yr-1,Annual gross primary production,2012-07-06 03:25:02,2021-04-27 19:41:54.549543,GPP_C_annual,,,,,, +455,minimum dbh measured,cm,DBH of smallest trees included in estimate. = 0 when all plants are included.,2012-07-06 20:42:34,2012-07-06 20:42:34,min dbh,,,,,, +456,Average daily max photosynthesis as fraction of Amax (no units),fraction,A SIPNET variable.,2012-07-16 22:36:30,2012-07-16 22:36:30,AmaxFrac,,,,,, +470,Annual Evapotranspiraiton,mm y-1,"If measured for part of year (e.g. growing season ET), add start date and end date as covariates.",2012-09-12 18:20:30,2012-09-13 20:39:08,AET,,,,,, +472,Plant Transpiration,mm y-1,"By definition, refers to the growing season (otherwise plants do not transpire). If available, add start date and end date as covariates.",2012-09-13 20:40:07,2012-09-13 20:40:07,Transpiration,,,,,, +479,"",umol m-2 s-1,"",2013-01-07 05:25:30,2013-01-07 05:27:10,Soil Respiration,,,,,, +480,Live and Dead fine root biomass,Mg ha-1,"",2013-01-14 20:03:42,2013-01-14 20:03:42,biomass_root_fine_live&dead,,,,,, 481,total net primary productivity,Mg ha-1 yr-1,"Total NPP, including foliage, branch, stem, coarse root, and fine root. NPP_1= NPP_foliage +NPP_woody + NPP_fine root -",2013-01-14 20:36:29,2013-01-14 20:36:29,NPP_1,Infinity,-Infinity,,,, -488,plant available soil moisture,mm,"",2013-03-17 20:34:24,2013-03-17 20:34:24,PASW,Infinity,-Infinity,,,, -489,"",years,"",2013-04-15 17:29:40,2013-04-15 17:29:40,Seedling-age,Infinity,-Infinity,,,, -490,"Used as a covariate when canopy position (e.g. upper canopy, lower canopy) is given","","Qualitative canopy position covariate. E.g. ""upper canopy"" or ""lower canopy"" where upper canopy is often the upper 10% and lower canopy is the lowest whorl of branches",2013-05-24 14:52:56,2013-05-24 14:52:56,Canopy Position,Infinity,-Infinity,,,, -494,fraction of total biomass in roots (by dry weight),percent,"",2013-09-04 19:06:42,2013-09-04 19:08:52,root_fraction,Infinity,-Infinity,,,, -461,Slope of VPD–photosynthesis relationship,kPa-1,"",2012-07-19 14:57:29,2014-06-16 22:12:30.782044,dVPDSlope,Infinity,-Infinity,,,, -538,green leaf biomass,g m-2,dry weight of green leaf biomass,2013-10-24 20:35:23,2015-11-02 18:18:32.683666,leaf_live_biomass,Infinity,-Infinity,"","","","" -442,total carotenoids content,mg cm-2,"",2012-07-02 20:20:27,2021-04-27 19:41:39.207477,carotenoids,Infinity,0,"","","","" +",2013-01-14 20:36:29,2013-01-14 20:36:29,NPP_1,,,,,, +488,plant available soil moisture,mm,"",2013-03-17 20:34:24,2013-03-17 20:34:24,PASW,,,,,, +489,"",years,"",2013-04-15 17:29:40,2013-04-15 17:29:40,Seedling-age,,,,,, +490,"Used as a covariate when canopy position (e.g. upper canopy, lower canopy) is given","","Qualitative canopy position covariate. E.g. ""upper canopy"" or ""lower canopy"" where upper canopy is often the upper 10% and lower canopy is the lowest whorl of branches",2013-05-24 14:52:56,2013-05-24 14:52:56,Canopy Position,,,,,, +494,fraction of total biomass in roots (by dry weight),percent,"",2013-09-04 19:06:42,2013-09-04 19:08:52,root_fraction,,,,,, +461,Slope of VPD–photosynthesis relationship,kPa-1,"",2012-07-19 14:57:29,2014-06-16 22:12:30.782044,dVPDSlope,,,,,, +538,green leaf biomass,g m-2,dry weight of green leaf biomass,2013-10-24 20:35:23,2015-11-02 18:18:32.683666,leaf_live_biomass,,,"","","","" +442,total carotenoids content,mg cm-2,"",2012-07-02 20:20:27,2021-04-27 19:41:39.207477,carotenoids,,0,"","","","" 452,annual net ecosystem production,Mg [C] ha-1 yr-1,"net ecosystem production measured biometrically or as NPP- decomposition -",2012-07-06 03:48:31,2021-04-27 19:41:55.103382,NEP_annual,Infinity,-Infinity,,,, -454,annual autotrophic respiration,Mg [C] ha-1 yr-1,Annual autotrophic respiration—above- and belowground.,2012-07-06 03:49:44,2021-04-27 19:41:56.490025,R_auto_annual,Infinity,-Infinity,,,, -457,Optimum temperature for photosynthesis,C,The temperature optimum for photosynthesis,2012-07-16 22:46:13,2021-04-27 19:41:58.376555,psnTOpt,Infinity,-Infinity,,,, -460,PAR at which photosynthesis occurs at 1/2 theoretical maximum,einsteins m-2 day-1,SIPNET variable.,2012-07-19 14:41:07,2021-04-27 19:42:03.142688,half_saturation_PAR,Infinity,-Infinity,,,, -462,VPD–water use efficiency relationship,mg [CO2] kPa g-1 [H2O],"",2012-07-19 15:00:59,2021-04-27 19:42:12.139416,dVpdExp,Infinity,-Infinity,,,, -467,Amount of leaf growth following leaf-out,g [C] m-2,"",2012-07-19 20:25:12,2021-04-27 19:42:17.673885,leafGrowth,Infinity,-Infinity,,,, -476,Coarse root C,Mg [C] ha-1,"Coarse root biomass C. Covariates: Depth, root_diameter_min",2012-12-29 06:09:54,2021-04-27 19:42:56.480048,C_root_coarse,Infinity,-Infinity,,,, +",2012-07-06 03:48:31,2021-04-27 19:41:55.103382,NEP_annual,,,,,, +454,annual autotrophic respiration,Mg [C] ha-1 yr-1,Annual autotrophic respiration—above- and belowground.,2012-07-06 03:49:44,2021-04-27 19:41:56.490025,R_auto_annual,,,,,, +457,Optimum temperature for photosynthesis,C,The temperature optimum for photosynthesis,2012-07-16 22:46:13,2021-04-27 19:41:58.376555,psnTOpt,,,,,, +460,PAR at which photosynthesis occurs at 1/2 theoretical maximum,einsteins m-2 day-1,SIPNET variable.,2012-07-19 14:41:07,2021-04-27 19:42:03.142688,half_saturation_PAR,,,,,, +462,VPD–water use efficiency relationship,mg [CO2] kPa g-1 [H2O],"",2012-07-19 15:00:59,2021-04-27 19:42:12.139416,dVpdExp,,,,,, +467,Amount of leaf growth following leaf-out,g [C] m-2,"",2012-07-19 20:25:12,2021-04-27 19:42:17.673885,leafGrowth,,,,,, +476,Coarse root C,Mg [C] ha-1,"Coarse root biomass C. Covariates: Depth, root_diameter_min",2012-12-29 06:09:54,2021-04-27 19:42:56.480048,C_root_coarse,,,,,, 477,C in aboveground structural biomass,Mg [C] ha-1,"Aboveground structural (stem + branch) biomass C. -covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-12-29 06:12:15,2021-04-27 19:42:58.215221,C_ags,Infinity,-Infinity,,,, +covariate: min dbh (DBH of smallest trees included in estimate. = 0 when all plants are included)",2012-12-29 06:12:15,2021-04-27 19:42:58.215221,C_ags,,,,,, 468,"",degrees,"",2012-09-05 19:35:26,2021-04-27 19:42:33.907083,Latitude,90,-90,,,, 469,"",degrees,"",2012-09-05 19:35:40,2021-04-27 19:42:43.978402,Longitude,180,-180,,,, 478,total root C,Mg [C] ha-1,"Total root biomass C. -Covariates: Depth, root_diameter_min, root_diameter_max",2012-12-29 06:14:17,2021-04-27 19:42:58.816955,C_root_total,Infinity,-Infinity,,,, -485,gas measured,[boolean],"",2013-01-15 21:02:26,2021-04-27 19:43:19.965879,CO2_measurement,Infinity,-Infinity,,,, -486,gas measured,[boolean],"",2013-01-15 21:02:30,2021-04-27 19:43:20.417647,O2_measurement,Infinity,-Infinity,,,, -496,"",count [leaves],"",2013-09-18 18:02:05,2021-04-27 19:43:47.395883,number of leaves,Infinity,-Infinity,,,, -497,"",m2,"",2013-09-18 18:06:22,2021-04-27 19:43:49.622927,rooting area,Infinity,-Infinity,,,, -482,"Attached; can be 1 (True, attached or intact) or 0 (false detached/excised).",[boolean],Originally created to describe state of roots to code root respiration methods,2013-01-15 16:27:51,2021-04-27 19:43:18.140509,attached,Infinity,-Infinity,,,, -483,"can be 1 (True if seedling) or 0 (False, if mature)",[boolean],"",2013-01-15 16:30:29,2021-04-27 19:43:19.584435,seedling,Infinity,-Infinity,,,, -487,Microbial Biomass carbon,mg [C] kg-1 soil,fumigation-extraction method,2013-01-23 03:24:12,2021-04-27 19:43:24.342439,Microbial Biomass C,Infinity,-Infinity,,,, -491,total dry biomass per plant,g [per plant],"",2013-08-14 17:25:39,2021-04-27 19:43:33.399279,total_biomass_per_plant,Infinity,-Infinity,,,, -498,"",count [leaves],"",2013-09-20 20:08:00,2021-04-27 19:43:51.912676,Unfolded leaves,Infinity,-Infinity,,,, -499,"",m2 [per plant],"",2013-09-20 20:09:41,2021-04-27 19:44:03.549321,ground area per plant,Infinity,-Infinity,,,, -504,number of leaves harvested on specified date,leaves/plant,"",2013-09-27 20:32:14,2013-10-04 17:42:13,leaf_number_harvested,Infinity,-Infinity,,,, -506,"",leaves/hectare,"",2013-10-04 17:44:09,2013-10-04 17:47:47,leaf_number_harvested_per_hectare,Infinity,-Infinity,,,, -507,Annual foliar respiration,Mg C ha-1 yr-1,"",2013-10-04 22:15:39,2013-10-04 22:15:39,R_foliage_annual,Infinity,-Infinity,,,, -508,Annual stem/wood respiration,Mg C ha-1 yr-1,"",2013-10-04 22:16:04,2013-10-04 22:16:04,R_wood_annual,Infinity,-Infinity,,,, -509,Annual aboveground respiration = R_foliage_annual+ R_wood_annual,Mg C ha-1 yr-1,"",2013-10-04 22:16:28,2013-10-04 22:16:28,R_ag_annual,Infinity,-Infinity,,,, -510,TBCF: total belowground C flux,Mg C ha-1 yr-1,"",2013-10-04 22:16:49,2013-10-04 22:16:49,TBCF,Infinity,-Infinity,,,, -529,"",percent,"",2013-10-10 17:28:18,2013-10-10 17:29:25,percent leaf fiber,Infinity,-Infinity,,,, -530,"",percent,"",2013-10-10 17:32:07,2013-10-10 17:32:07,percent bole fiber,Infinity,-Infinity,,,, -531,"",g/plant,"",2013-10-10 17:39:53,2013-10-10 17:39:53,Bole biomass per plant,Infinity,-Infinity,,,, +Covariates: Depth, root_diameter_min, root_diameter_max",2012-12-29 06:14:17,2021-04-27 19:42:58.816955,C_root_total,,,,,, +485,gas measured,[boolean],"",2013-01-15 21:02:26,2021-04-27 19:43:19.965879,CO2_measurement,,,,,, +486,gas measured,[boolean],"",2013-01-15 21:02:30,2021-04-27 19:43:20.417647,O2_measurement,,,,,, +496,"",count [leaves],"",2013-09-18 18:02:05,2021-04-27 19:43:47.395883,number of leaves,,,,,, +497,"",m2,"",2013-09-18 18:06:22,2021-04-27 19:43:49.622927,rooting area,,,,,, +482,"Attached; can be 1 (True, attached or intact) or 0 (false detached/excised).",[boolean],Originally created to describe state of roots to code root respiration methods,2013-01-15 16:27:51,2021-04-27 19:43:18.140509,attached,,,,,, +483,"can be 1 (True if seedling) or 0 (False, if mature)",[boolean],"",2013-01-15 16:30:29,2021-04-27 19:43:19.584435,seedling,,,,,, +487,Microbial Biomass carbon,mg [C] kg-1 soil,fumigation-extraction method,2013-01-23 03:24:12,2021-04-27 19:43:24.342439,Microbial Biomass C,,,,,, +491,total dry biomass per plant,g [per plant],"",2013-08-14 17:25:39,2021-04-27 19:43:33.399279,total_biomass_per_plant,,,,,, +498,"",count [leaves],"",2013-09-20 20:08:00,2021-04-27 19:43:51.912676,Unfolded leaves,,,,,, +499,"",m2 [per plant],"",2013-09-20 20:09:41,2021-04-27 19:44:03.549321,ground area per plant,,,,,, +504,number of leaves harvested on specified date,leaves/plant,"",2013-09-27 20:32:14,2013-10-04 17:42:13,leaf_number_harvested,,,,,, +506,"",leaves/hectare,"",2013-10-04 17:44:09,2013-10-04 17:47:47,leaf_number_harvested_per_hectare,,,,,, +507,Annual foliar respiration,Mg C ha-1 yr-1,"",2013-10-04 22:15:39,2013-10-04 22:15:39,R_foliage_annual,,,,,, +508,Annual stem/wood respiration,Mg C ha-1 yr-1,"",2013-10-04 22:16:04,2013-10-04 22:16:04,R_wood_annual,,,,,, +509,Annual aboveground respiration = R_foliage_annual+ R_wood_annual,Mg C ha-1 yr-1,"",2013-10-04 22:16:28,2013-10-04 22:16:28,R_ag_annual,,,,,, +510,TBCF: total belowground C flux,Mg C ha-1 yr-1,"",2013-10-04 22:16:49,2013-10-04 22:16:49,TBCF,,,,,, +529,"",percent,"",2013-10-10 17:28:18,2013-10-10 17:29:25,percent leaf fiber,,,,,, +530,"",percent,"",2013-10-10 17:32:07,2013-10-10 17:32:07,percent bole fiber,,,,,, +531,"",g/plant,"",2013-10-10 17:39:53,2013-10-10 17:39:53,Bole biomass per plant,,,,,, 474,belowground NPP: coarse roots,Mg [C] ha-1 yr-1,"Coarse-root annual production determined through species- and region-specific allometric equations relating root mass to basal area -",2012-12-06 20:28:14,2021-04-27 19:42:51.289006,BNPP_coarse root_C,Infinity,-Infinity,,,, -543,Value of Jmax at 25 degC.,umol photons m-2 s-1,"",2013-11-18 17:44:00,2013-11-18 17:44:00,Jmax25,Infinity,-Infinity,,,, -549,leaf litter+ wood litter,t ha-1 yr-1,"",2014-03-06 21:21:28.237567,2014-03-06 21:21:44.465405,total_annual_litter_fall,Infinity,-Infinity,,,, -551,Aboveground yield of fine root,Mg ha-1 yr-1,"",2014-04-08 15:42:29.509182,2014-04-08 15:42:43.568211,Ayield_fine_root,Infinity,-Infinity,,,, -552,Aboveground yield of coarse root,Mg ha-1 yr-1,"",2014-04-08 15:43:17.070406,2014-04-08 15:43:17.070406,Ayield_coarse_root,Infinity,-Infinity,,,, -553,Direct input rate of detrital biomass,Mg ha-1 yr-1,"Includes dead structural material (i.e., stems and branches)",2014-04-10 02:04:32.552407,2014-04-10 02:04:32.552407,detrital_input_rate,Infinity,-Infinity,,,, -554,Air pressure,Pa,"",2014-05-17 12:21:45.601145,2014-05-17 12:21:45.601145,air_pressure,Infinity,-Infinity,,,, -541,Leaf Fiber Yield,Mg ha -1,"",2013-11-08 16:47:36,2013-11-08 16:47:36,yield_fiber_leaf,Infinity,-Infinity,,,, +",2012-12-06 20:28:14,2021-04-27 19:42:51.289006,BNPP_coarse root_C,,,,,, +543,Value of Jmax at 25 degC.,umol photons m-2 s-1,"",2013-11-18 17:44:00,2013-11-18 17:44:00,Jmax25,,,,,, +549,leaf litter+ wood litter,t ha-1 yr-1,"",2014-03-06 21:21:28.237567,2014-03-06 21:21:44.465405,total_annual_litter_fall,,,,,, +551,Aboveground yield of fine root,Mg ha-1 yr-1,"",2014-04-08 15:42:29.509182,2014-04-08 15:42:43.568211,Ayield_fine_root,,,,,, +552,Aboveground yield of coarse root,Mg ha-1 yr-1,"",2014-04-08 15:43:17.070406,2014-04-08 15:43:17.070406,Ayield_coarse_root,,,,,, +553,Direct input rate of detrital biomass,Mg ha-1 yr-1,"Includes dead structural material (i.e., stems and branches)",2014-04-10 02:04:32.552407,2014-04-10 02:04:32.552407,detrital_input_rate,,,,,, +554,Air pressure,Pa,"",2014-05-17 12:21:45.601145,2014-05-17 12:21:45.601145,air_pressure,,,,,, +541,Leaf Fiber Yield,Mg ha -1,"",2013-11-08 16:47:36,2013-11-08 16:47:36,yield_fiber_leaf,,,,,, 390,Wind speed,m s-1,"Wind velocity magnitude -CF standard name: wind_speed",2012-05-02 18:23:59,2014-05-22 13:46:55.940421,Wspd,Infinity,-Infinity,,,, -560,Wind direction,degrees,compass degrees relative to true North. Commonly used to decompose wind speed into u and v components,2014-05-22 14:06:50.161803,2014-05-22 14:06:50.161803,wind_direction,Infinity,-Infinity,,,, -561,Downward thermal radiation,W m-2,"",2014-05-22 14:36:17.575812,2014-05-22 14:36:17.575812,surface_downwelling_longwave_flux_in_air,Infinity,-Infinity,,,, -495,"",Mg ha-1,"",2013-09-18 18:00:00,2021-04-27 19:43:42.652022,leaf_dead_biomass_in_Mg_ha,Infinity,-Infinity,"","","","" -559,Northward wind,m s-1,vwind,2014-05-22 13:46:19.73155,2021-04-27 19:45:33.223796,northward_wind,Infinity,-Infinity,,,, -562,"",Mg ha-1,"",2014-05-22 18:56:30.117464,2021-04-27 19:45:39.622026,root_live_biomass,Infinity,-Infinity,,,, +CF standard name: wind_speed",2012-05-02 18:23:59,2014-05-22 13:46:55.940421,Wspd,,,,,, +560,Wind direction,degrees,compass degrees relative to true North. Commonly used to decompose wind speed into u and v components,2014-05-22 14:06:50.161803,2014-05-22 14:06:50.161803,wind_direction,,,,,, +561,Downward thermal radiation,W m-2,"",2014-05-22 14:36:17.575812,2014-05-22 14:36:17.575812,surface_downwelling_longwave_flux_in_air,,,,,, +495,"",Mg ha-1,"",2013-09-18 18:00:00,2021-04-27 19:43:42.652022,leaf_dead_biomass_in_Mg_ha,,,"","","","" +559,Northward wind,m s-1,vwind,2014-05-22 13:46:19.73155,2021-04-27 19:45:33.223796,northward_wind,,,,,, +562,"",Mg ha-1,"",2014-05-22 18:56:30.117464,2021-04-27 19:45:39.622026,root_live_biomass,,,,,, 501,ED2 parameter. Near-infrared reflectance (0-1),"",ED2 specific parameter defining leaf reflectance. Used to derive leaf_scatter_vis(ipft),2013-09-23 19:11:57,2021-04-27 19:44:27.813977,leaf_reflect_nir,1,0,,,, -544,ul of CO2 consumption per gram dry weight per hour,ul [CO2] g-1 h-1,"",2013-11-21 20:30:44,2021-04-27 19:44:46.525736,root_respiration _rate ul CO2,Infinity,-Infinity,,,, -545,Root respiration based on oxygen uptake ul O2 per gram dry weight per hour,ul [O2] g-1 h-1,"",2013-11-21 21:39:38,2021-04-27 19:44:51.439685,root_respiration_rate_O2 uptake,Infinity,-Infinity,,,, -547,Amount of Sunlight Available,W m-2,"",2013-12-03 16:34:44,2021-04-27 19:44:58.553296,solar_radiation,Infinity,-Infinity,,,, -548,aboveground NPP,Mg [C] ha-1 yr-1,total vascular plant NPP,2014-02-07 22:39:18.360718,2021-04-27 19:45:03.084401,ANPP,Infinity,-Infinity,,,, -550,mg carbon dry wieght,mg [C] g-1 [dry weight],"",2014-03-06 21:47:05.676336,2021-04-27 19:45:17.697483,Carbon mass,Infinity,-Infinity,,,, -555,rain,kg m-2 s-1,units equivalent to mm/s,2014-05-17 12:49:20.966973,2021-04-27 19:45:25.481427,precipitation_flux,Infinity,-Infinity,,,, -558,Eastward wind,m s-1,uwind,2014-05-22 13:45:39.206154,2021-04-27 19:45:31.717414,eastward_wind,Infinity,-Infinity,,,, -557,Specific Humidity,g g-1,"""specific"" means per unit mass. Specific humidity is the mass fraction of water vapor in (moist) air (e.g. kg_H20/kg_air)",2014-05-21 15:00:43.61146,2014-05-28 23:39:24.551836,specific_humidity,Infinity,-Infinity,,,, -566,Specific Leaf Nitrogen,g m-2,"",2014-06-04 16:39:19.249844,2014-06-04 16:39:19.249844,SLN,Infinity,-Infinity,,,, -505,number of leaves per plant,leaves / plant,"",2013-09-27 20:35:39,2016-08-10 21:30:10.21356,leaf_number_per_plant,Infinity,-Infinity,"","","",plant trait -567,leaf level instantaneous transpiration,mmol m-2 s-1,"",2014-06-25 17:34:35.641997,2014-06-25 17:34:35.641997,leaf_transpiration,Infinity,-Infinity,"","","", -565,scalar wind speed,m s-1,"",2014-05-28 23:38:31.230551,2014-08-21 01:40:17.072967,wind_speed,Infinity,-Infinity,"","","", +544,ul of CO2 consumption per gram dry weight per hour,ul [CO2] g-1 h-1,"",2013-11-21 20:30:44,2021-04-27 19:44:46.525736,root_respiration _rate ul CO2,,,,,, +545,Root respiration based on oxygen uptake ul O2 per gram dry weight per hour,ul [O2] g-1 h-1,"",2013-11-21 21:39:38,2021-04-27 19:44:51.439685,root_respiration_rate_O2 uptake,,,,,, +547,Amount of Sunlight Available,W m-2,"",2013-12-03 16:34:44,2021-04-27 19:44:58.553296,solar_radiation,,,,,, +548,aboveground NPP,Mg [C] ha-1 yr-1,total vascular plant NPP,2014-02-07 22:39:18.360718,2021-04-27 19:45:03.084401,ANPP,,,,,, +550,mg carbon dry wieght,mg [C] g-1 [dry weight],"",2014-03-06 21:47:05.676336,2021-04-27 19:45:17.697483,Carbon mass,,,,,, +555,rain,kg m-2 s-1,units equivalent to mm/s,2014-05-17 12:49:20.966973,2021-04-27 19:45:25.481427,precipitation_flux,,,,,, +558,Eastward wind,m s-1,uwind,2014-05-22 13:45:39.206154,2021-04-27 19:45:31.717414,eastward_wind,,,,,, +557,Specific Humidity,g g-1,"""specific"" means per unit mass. Specific humidity is the mass fraction of water vapor in (moist) air (e.g. kg_H20/kg_air)",2014-05-21 15:00:43.61146,2014-05-28 23:39:24.551836,specific_humidity,,,,,, +566,Specific Leaf Nitrogen,g m-2,"",2014-06-04 16:39:19.249844,2014-06-04 16:39:19.249844,SLN,,,,,, +505,number of leaves per plant,leaves / plant,"",2013-09-27 20:35:39,2016-08-10 21:30:10.21356,leaf_number_per_plant,,,"","","",plant trait +567,leaf level instantaneous transpiration,mmol m-2 s-1,"",2014-06-25 17:34:35.641997,2014-06-25 17:34:35.641997,leaf_transpiration,,,"","","", +565,scalar wind speed,m s-1,"",2014-05-28 23:38:31.230551,2014-08-21 01:40:17.072967,wind_speed,,,"","","", 428,Foliage NPP (annual),Mg ha-1 yr-1,"Foliage NPP: net annual production of leaves or needles was determined by collecting leaf/needle fall throughout the year -",2012-06-15 05:25:22,2012-06-15 05:25:22,ANPP_foliage,Infinity,-Infinity,,,, -475,total dead,Mg ha-1,Includes standing and coarse woody debris,2012-12-10 20:03:59,2012-12-10 20:03:59,Deadwood,Infinity,-Infinity,,,, +",2012-06-15 05:25:22,2012-06-15 05:25:22,ANPP_foliage,,,,,, +475,total dead,Mg ha-1,Includes standing and coarse woody debris,2012-12-10 20:03:59,2012-12-10 20:03:59,Deadwood,,,,,, 546,Initial slope of the light response curve,Fraction,"Chemical Reaction Per Photon The values must be less the 1.0. The closer to 1, the higher the efficiency of low light photosynthesis. -",2013-12-03 16:17:31,2013-12-03 16:28:03,quantum_yield,Infinity,-Infinity,,,, -564,Downward solar shortwave radiation,W m-2,"",2014-05-28 23:36:49.430711,2014-05-28 23:36:49.430711,surface_downwelling_shortwave_flux_in_air,Infinity,-Infinity,,,, -569,Behavior related to growth (tall plant/short plant),"","",2015-03-12 22:28:52.918295,2015-03-12 22:28:52.918295,plant_habit,Infinity,-Infinity,"","",plant_habit, -570,Stage that plant reachs the maturity (Early or Later),"","",2015-03-12 22:31:52.241867,2015-03-12 22:31:52.241867,maturity_stage,Infinity,-Infinity,"","",maturity_stage, -571,Assimilation Rate,umol m2 s,Photosynthesis rate. Requires covariates temperature and PAR,2015-04-29 02:35:41.963835,2015-04-29 02:35:41.963835,A,Infinity,-Infinity,"","","", +",2013-12-03 16:17:31,2013-12-03 16:28:03,quantum_yield,,,,,, +564,Downward solar shortwave radiation,W m-2,"",2014-05-28 23:36:49.430711,2014-05-28 23:36:49.430711,surface_downwelling_shortwave_flux_in_air,,,,,, +569,Behavior related to growth (tall plant/short plant),"","",2015-03-12 22:28:52.918295,2015-03-12 22:28:52.918295,plant_habit,,,"","",plant_habit, +570,Stage that plant reachs the maturity (Early or Later),"","",2015-03-12 22:31:52.241867,2015-03-12 22:31:52.241867,maturity_stage,,,"","",maturity_stage, +571,Assimilation Rate,umol m2 s,Photosynthesis rate. Requires covariates temperature and PAR,2015-04-29 02:35:41.963835,2015-04-29 02:35:41.963835,A,,,"","","", 572,"Includes enlarged stems, roots, and tubers; NOT rhizomes; see notes",Mg ha-1,"Tubers are enlarged roots, (in contrast to rhizomes, which are enlarged stems). This variable refers to three types of belowground storage organs: @@ -558,64 +558,64 @@ This variable refers to three types of belowground storage organs: * Root Crops: Beet, Carrot This variable does not refer to rhizomes: -* Miscanthus, Strawberry",2015-05-08 16:35:35.257602,2015-05-08 16:35:35.257602,tuber_biomass,Infinity,-Infinity,"","","", -573,"",K,"",2015-05-14 14:19:48.247705,2015-05-14 14:19:48.247705,air_temperature,Infinity,-Infinity,air_temperature,K,"", -574,"",Pa,"",2015-05-14 14:21:34.067352,2015-05-14 14:21:34.067352,surface_pressure,Infinity,-Infinity,surface_pressure,Pa,"", -111,length of shoot,cm,"",,2011-06-06 14:40:42,shoot_length,Infinity,-Infinity,,,, -112,diameter of single shoot,cm,"",,2011-06-06 14:40:42,single_shoot_diameter,Infinity,-Infinity,,,, -113,"single shoot weight, fresh matter",g,"",,2011-06-06 14:40:42,single_shoot_weight,Infinity,-Infinity,,,, -114,number of shoots per plants,"","",,2011-06-06 14:40:42,shoots_per_plant,Infinity,-Infinity,,,, -118,phosphorus in shoot,percent,"",,2011-06-06 14:40:42,stemP,Infinity,-Infinity,,,, -119,potassium in shoot,percent,"",,2011-06-06 14:40:42,stemK,Infinity,-Infinity,,,, -126,raffinose in rhizome,mg g-1,"",,2011-06-06 14:40:42,rhizome_raffinose,Infinity,0,,,, -127,total sugar in rhizome,mg g-1,"",,2011-06-06 14:40:42,rhizome_total_sugar,Infinity,0,,,, -136,photosynthetically active radiation,umol m-2 s-1,"",,2011-06-06 14:40:42,PAR,Infinity,0,,,, -249,Biomass of leaves per area ground,g m-2,this is not the same as LMA. This is the total mass of leaves above an area of ground.,2010-12-18 07:14:57,2011-12-06 23:38:16,leaf_biomass_area,Infinity,0,,,, -28,Mimimum height for reproduction,m,"",,2011-06-06 14:40:42,repro_min_h,Infinity,0,,,, -295,triose phosphate utilization,umol m-2 s-1,"",2011-06-07 22:45:16,2011-06-07 22:45:16,TPU,Infinity,0,,,, -134,nitrogen content in dry weight,g kg-1 [dry weight],"",,2021-04-27 19:29:29.540282,aboveN,Infinity,0,,,, -138,NA,umol [electron] m-2 s-1,"",,2021-04-27 19:30:16.668573,ETRmax,Infinity,0,,,, -257,"",[dead shoots] count m-2,"",2011-02-24 19:28:31,2021-04-27 19:33:51.736131,shoot_density_dead,Infinity,-Infinity,,,, -258,"",[shoots] count m-2,"",2011-02-24 19:31:21,2021-04-27 19:33:57.709739,shoot_density_live,Infinity,-Infinity,,,, -297,Net ecosystem exchange,umol [C] m-2 s-1,"",2011-06-22 16:15:00,2021-04-27 19:34:57.665812,NEE,Infinity,0,,,, -305,Stalk Dry Matter,Mg ha,"",2011-09-08 17:09:26,2021-04-27 19:35:03.578716,SDM,Infinity,0,,,, +* Miscanthus, Strawberry",2015-05-08 16:35:35.257602,2015-05-08 16:35:35.257602,tuber_biomass,,,"","","", +573,"",K,"",2015-05-14 14:19:48.247705,2015-05-14 14:19:48.247705,air_temperature,,,air_temperature,K,"", +574,"",Pa,"",2015-05-14 14:21:34.067352,2015-05-14 14:21:34.067352,surface_pressure,,,surface_pressure,Pa,"", +111,length of shoot,cm,"",,2011-06-06 14:40:42,shoot_length,,,,,, +112,diameter of single shoot,cm,"",,2011-06-06 14:40:42,single_shoot_diameter,,,,,, +113,"single shoot weight, fresh matter",g,"",,2011-06-06 14:40:42,single_shoot_weight,,,,,, +114,number of shoots per plants,"","",,2011-06-06 14:40:42,shoots_per_plant,,,,,, +118,phosphorus in shoot,percent,"",,2011-06-06 14:40:42,stemP,,,,,, +119,potassium in shoot,percent,"",,2011-06-06 14:40:42,stemK,,,,,, +126,raffinose in rhizome,mg g-1,"",,2011-06-06 14:40:42,rhizome_raffinose,,0,,,, +127,total sugar in rhizome,mg g-1,"",,2011-06-06 14:40:42,rhizome_total_sugar,,0,,,, +136,photosynthetically active radiation,umol m-2 s-1,"",,2011-06-06 14:40:42,PAR,,0,,,, +249,Biomass of leaves per area ground,g m-2,this is not the same as LMA. This is the total mass of leaves above an area of ground.,2010-12-18 07:14:57,2011-12-06 23:38:16,leaf_biomass_area,,0,,,, +28,Mimimum height for reproduction,m,"",,2011-06-06 14:40:42,repro_min_h,,0,,,, +295,triose phosphate utilization,umol m-2 s-1,"",2011-06-07 22:45:16,2011-06-07 22:45:16,TPU,,0,,,, +134,nitrogen content in dry weight,g kg-1 [dry weight],"",,2021-04-27 19:29:29.540282,aboveN,,0,,,, +138,NA,umol [electron] m-2 s-1,"",,2021-04-27 19:30:16.668573,ETRmax,,0,,,, +257,"",[dead shoots] count m-2,"",2011-02-24 19:28:31,2021-04-27 19:33:51.736131,shoot_density_dead,,,,,, +258,"",[shoots] count m-2,"",2011-02-24 19:31:21,2021-04-27 19:33:57.709739,shoot_density_live,,,,,, +297,Net ecosystem exchange,umol [C] m-2 s-1,"",2011-06-22 16:15:00,2021-04-27 19:34:57.665812,NEE,,0,,,, +305,Stalk Dry Matter,Mg ha,"",2011-09-08 17:09:26,2021-04-27 19:35:03.578716,SDM,,0,,,, 316,rate of stem respiration at reference temperature,umol [CO2] kg-1 s-1,"Covariates to include: stemT -Equivalent to units of nmol CO_2 g-1 s-1. If converted from O2 consumption, assume 1 mol O2 = 1 mol CO2. ",2012-01-04 19:29:36,2021-04-27 19:36:02.860005,stem_respiration_rate,Infinity,0,,,, +Equivalent to units of nmol CO_2 g-1 s-1. If converted from O2 consumption, assume 1 mol O2 = 1 mol CO2. ",2012-01-04 19:29:36,2021-04-27 19:36:02.860005,stem_respiration_rate,,0,,,, 392,Soil Het Respiration,mg [CO2] m-2 hr-1,"soil heterotrophic respiration - may be estimated by various methods including: 1- ""trenching"" = cutting all roots around a subplot and lining that subplot to prevent roots from growing in -2- subtracting independently measured root respiration from total soil respiration.",2012-05-15 22:38:20,2021-04-27 19:39:22.428874,Soil Het Respiration,Infinity,-Infinity,,,, -400,Plant leaf O2 level,percent,"",2012-05-25 17:57:25,2021-04-27 19:39:27.116065,O2_concentration,Infinity,-Infinity,,,, +2- subtracting independently measured root respiration from total soil respiration.",2012-05-15 22:38:20,2021-04-27 19:39:22.428874,Soil Het Respiration,,,,,, +400,Plant leaf O2 level,percent,"",2012-05-25 17:57:25,2021-04-27 19:39:27.116065,O2_concentration,,,,,, 410,fine root NPP,Mg [C] ha-1 yr-1,"Fine root biomass production. determined by repeated soil coring, isotopic estimates of fine-root turnover combined with biomass measurements, upscaled root-length production observed in minirhizotrons or the soil respiration and litterfall constraint formulated by Raich -& Nadelhoffer (1989)",2012-06-09 22:21:17,2021-04-27 19:39:59.189739,BNPP_fine root_C,Infinity,-Infinity,,,, -453,annual heterotrophic respiration,Mg [C] ha-1 yr-1,Annual hetrotrophic respiration—above- and belowground.,2012-07-06 03:49:08,2021-04-27 19:41:55.629213,R_het_annual,Infinity,-Infinity,,,, +& Nadelhoffer (1989)",2012-06-09 22:21:17,2021-04-27 19:39:59.189739,BNPP_fine root_C,,,,,, +453,annual heterotrophic respiration,Mg [C] ha-1 yr-1,Annual hetrotrophic respiration—above- and belowground.,2012-07-06 03:49:08,2021-04-27 19:41:55.629213,R_het_annual,,,,,, 502,ED2 parameter. Leaf visible transmittance (0-1),"","",2013-09-24 14:49:22,2021-04-27 19:44:27.358331,leaf_trans_vis,1,0,,,, 503,ED2 parameter. Leaf near-infrared transmittance (0-1),"","",2013-09-24 14:49:57,2021-04-27 19:44:26.758213,leaf_trans_nir,1,0,,,, 500,ED2 parameter. Leaf visible reflectance (0-1),"",ED2 specific parameter defining leaf reflectance. Used to derive leaf_scatter_vis(ipft),2013-09-23 19:11:16,2021-04-27 19:44:28.578569,leaf_reflect_vis,1,0,,,, 347,plants height from ground level used to determine canopy_layer via the covariate canopy_height,m,"Optional Covariate: canopy_height -For some data sets, can also find canopy_height from tallest plant in same plot.",2012-01-12 20:21:51,2012-02-16 17:37:41,plant_height,Infinity,0,,,, -351,"leaf maintenance respiration on area basis, at the reference temperature",umol m-2 s-1,Covariates: leafT (reference temperature) & canopy height (optional).,2012-01-16 22:42:45,2012-01-16 22:44:49,leaf_maintenance_respiration_area,Infinity,0,,,, -353,Respiration of roots > 5mm in diameter,umol m-2 s-1,"",2012-01-20 16:28:12,2012-01-20 16:29:39,coarse root respiration,Infinity,0,,,, -354,Respiration of roots< 5mm in diameter,umol m-2 s-1,"",2012-01-20 16:29:18,2012-01-20 16:29:18,fine root respiration,Infinity,0,,,, -350,Change in leaf respiration for every 10 degree change in temperature,[ratio],Parameter Q10 is defined as the ratio of leaf respiration at a given temperature divided by leaf respiration at a temperature 10 degrees lower,2012-01-16 22:31:38,2021-04-27 19:23:15.519764,leaf_respiration_Q10,Infinity,0,"","","","" +For some data sets, can also find canopy_height from tallest plant in same plot.",2012-01-12 20:21:51,2012-02-16 17:37:41,plant_height,,0,,,, +351,"leaf maintenance respiration on area basis, at the reference temperature",umol m-2 s-1,Covariates: leafT (reference temperature) & canopy height (optional).,2012-01-16 22:42:45,2012-01-16 22:44:49,leaf_maintenance_respiration_area,,0,,,, +353,Respiration of roots > 5mm in diameter,umol m-2 s-1,"",2012-01-20 16:28:12,2012-01-20 16:29:39,coarse root respiration,,0,,,, +354,Respiration of roots< 5mm in diameter,umol m-2 s-1,"",2012-01-20 16:29:18,2012-01-20 16:29:18,fine root respiration,,0,,,, +350,Change in leaf respiration for every 10 degree change in temperature,[ratio],Parameter Q10 is defined as the ratio of leaf respiration at a given temperature divided by leaf respiration at a temperature 10 degrees lower,2012-01-16 22:31:38,2021-04-27 19:23:15.519764,leaf_respiration_Q10,,0,"","","","" 322,total branch respiration,umol [CO2] kg-1 s-1,"Covariates to include: branchT -Equivalent to units of nmol CO_2 g-1 s-1. If converted from O2 consumption, assume 1 mol O2 = 1 mol CO2. ",2012-01-05 19:27:12,2021-04-27 19:36:13.083188,branch_total_respiration,Infinity,0,,,, +Equivalent to units of nmol CO_2 g-1 s-1. If converted from O2 consumption, assume 1 mol O2 = 1 mol CO2. ",2012-01-05 19:27:12,2021-04-27 19:36:13.083188,branch_total_respiration,,0,,,, 339,root respiration rate on nitrogen basis,umol [CO_2] kg-1 [N] s-1,"Necessary Covariates: -rootT root_diameter_min & root_diameter_ max",2012-01-06 21:49:50,2021-04-27 19:37:42.17135,root_respiration_rate_per_nitrogen,Infinity,0,,,, +rootT root_diameter_min & root_diameter_ max",2012-01-06 21:49:50,2021-04-27 19:37:42.17135,root_respiration_rate_per_nitrogen,,0,,,, 344,rate of stem growing respiration at reference temperature,umol [CO2] kg-1 s-1,"Necessary covariates: -stemT",2012-01-06 22:01:51,2021-04-27 19:37:49.579454,stem_growth_respiration,Infinity,0,,,, +stemT",2012-01-06 22:01:51,2021-04-27 19:37:49.579454,stem_growth_respiration,,0,,,, 345,rate of stem maintenance respiration at reference temperature,umol [CO2] kg-1 s-1,"Necessary Covariates: -stemT",2012-01-06 22:03:36,2021-04-27 19:37:54.210925,stem_maintenance_respiration,Infinity,0,,,, -355,Nitrogen uptake rater per unit dry mass per unit time,mg [N] g-1 [root] day-1,mass of N/ mass of fine root/ time. root diameter is covariate when applicable.,2012-01-24 20:41:59,2021-04-27 19:38:17.641203,N_uptake_rate,Infinity,0,,,, +stemT",2012-01-06 22:03:36,2021-04-27 19:37:54.210925,stem_maintenance_respiration,,0,,,, +355,Nitrogen uptake rater per unit dry mass per unit time,mg [N] g-1 [root] day-1,mass of N/ mass of fine root/ time. root diameter is covariate when applicable.,2012-01-24 20:41:59,2021-04-27 19:38:17.641203,N_uptake_rate,,0,,,, 609,"","","proposed standard name for plant species identification code [Edited by Scott Rohde (srohde@illinois.edu) on Aug. 9, 2021, changing the name from ""species_id"" to ""Species ID"". (Having a variable named ""species_id"" and using it in a bulk upload file confuses the Bulk Upload wizard.] -",2016-05-18 15:47:14.414364,2021-08-09 17:56:05.302462,Species ID,Infinity,-Infinity,"","","","" -623,Fine root production percentage,percent,dvmdostem parameter controlling the percentage of fine root production at 10cm depth,2017-07-23 15:37:12.409872,2017-07-23 15:37:56.802471,frprod_perc_10,Infinity,-Infinity,"","","",plant trait +",2016-05-18 15:47:14.414364,2021-08-09 17:56:05.302462,Species ID,,,"","","","" +623,Fine root production percentage,percent,dvmdostem parameter controlling the percentage of fine root production at 10cm depth,2017-07-23 15:37:12.409872,2017-07-23 15:37:56.802471,frprod_perc_10,,,"","","",plant trait 38,leaf (cuticular) conductance when stomata fully closed,umol [H2O] m-2 s-1,Intercept for Ball-Berry model. Note units are umol: divide value by 10^3 to convert to mmol; divide by 10^6 to convert to mol ,,2021-04-27 19:23:15.519764,cuticular_cond,1000000,0,"","","", 404,Ball-Berry Model,[ratio],"links the stomatal conductance to leaf photosynthesis, humidity deficits, and CO2 concentration at the leaf's surface.",2012-06-01 18:15:08,2021-04-27 19:23:15.519764,stomatal_slope.BB,22,1,,,, 493,amount of CO2 released due to growth per unit net photosynthesis,mol [CO2] mol-1 [net assimilation],"This parameter is used in WIMOVAC and BioCro; in these models, Rg = g_R * Pn @@ -625,51 +625,51 @@ This is distinct from the term g_R from Giffords 2003 eq 3 (equivalent to Amthor R = g_R*G + m_R * W where G is the growth rate (new biomass s-1) and W is living biomass, because G = Pn - Rm - Rg",2013-08-29 22:52:49,2021-04-27 19:23:15.519764,growth_respiration_coefficient,100,0,,,, -621,"",percent,"",2017-02-20 20:00:21.283149,2021-04-27 19:23:15.519764,starch_content,Infinity,-Infinity,"","","","" -622,"",percent,"",2017-02-20 20:02:37.75677,2021-04-27 19:23:15.519764,protein_content,Infinity,-Infinity,"","","","" -368,"",percent,"",2012-03-13 16:51:27,2021-04-27 19:23:15.519764,perc_light,Infinity,-Infinity,,,, -391,Soil moisture relative to saturation,percent,Percent of soil moisture relative to saturation (saturation = 100%),2012-05-02 18:24:42,2021-04-27 19:23:15.519764,soilM,Infinity,-Infinity,"","","","" -473,volumetric soil moisture,percent,"",2012-11-23 16:45:41,2021-04-27 19:23:15.519764,SWC_volumetric,Infinity,-Infinity,,,, -511,percent composition,percent,"",2013-10-08 14:11:07,2021-04-27 19:23:15.519764,l_protein,Infinity,-Infinity,,,, -512,percent composition,percent,"",2013-10-08 14:21:59,2021-04-27 19:23:15.519764,l_carbohydrates,Infinity,-Infinity,,,, +621,"",percent,"",2017-02-20 20:00:21.283149,2021-04-27 19:23:15.519764,starch_content,,,"","","","" +622,"",percent,"",2017-02-20 20:02:37.75677,2021-04-27 19:23:15.519764,protein_content,,,"","","","" +368,"",percent,"",2012-03-13 16:51:27,2021-04-27 19:23:15.519764,perc_light,,,,,, +391,Soil moisture relative to saturation,percent,Percent of soil moisture relative to saturation (saturation = 100%),2012-05-02 18:24:42,2021-04-27 19:23:15.519764,soilM,,,"","","","" +473,volumetric soil moisture,percent,"",2012-11-23 16:45:41,2021-04-27 19:23:15.519764,SWC_volumetric,,,,,, +511,percent composition,percent,"",2013-10-08 14:11:07,2021-04-27 19:23:15.519764,l_protein,,,,,, +512,percent composition,percent,"",2013-10-08 14:21:59,2021-04-27 19:23:15.519764,l_carbohydrates,,,,,, 513,percent composition,percent," -",2013-10-08 14:22:53,2021-04-27 19:23:15.519764,l_lipids,Infinity,-Infinity,,,, -514,percent composition,percent,"",2013-10-08 14:23:20,2021-04-27 19:23:15.519764,l_lignin,Infinity,-Infinity,,,, -515,percent composition,percent,"",2013-10-08 14:24:01,2021-04-27 19:23:15.519764,l_organicacids,Infinity,-Infinity,,,, -516,percent composition,percent,"",2013-10-08 14:24:38,2021-04-27 19:23:15.519764,l_minerals,Infinity,-Infinity,,,, -517,stem composition,percent,"",2013-10-08 14:33:43,2021-04-27 19:23:15.519764,s_protein,Infinity,-Infinity,,,, -518,stem composition,percent,"",2013-10-08 14:34:08,2021-04-27 19:23:15.519764,s_carbohydrates,Infinity,-Infinity,,,, -519,stem composition,percent,"",2013-10-08 14:34:37,2021-04-27 19:23:15.519764,s_lipids,Infinity,-Infinity,,,, -520,stem composition,percent,"",2013-10-08 14:35:15,2021-04-27 19:23:15.519764,s_lignin,Infinity,-Infinity,,,, -521,stem composition,percent,"",2013-10-08 14:35:53,2021-04-27 19:23:15.519764,s_minerals,Infinity,-Infinity,,,, -522,stem composition,percent,"",2013-10-08 14:36:34,2021-04-27 19:23:15.519764,s_organicacids,Infinity,-Infinity,,,, -523,root composition,percent,"",2013-10-08 14:36:58,2021-04-27 19:23:15.519764,r_protein,Infinity,-Infinity,,,, -524,root composition,percent,"",2013-10-08 14:37:22,2021-04-27 19:23:15.519764,r_carbohydrates,Infinity,-Infinity,,,, -525,root composition,percent,"",2013-10-08 14:37:52,2021-04-27 19:23:15.519764,r_lipids,Infinity,-Infinity,,,, -526,root composition,percent,"",2013-10-08 14:38:24,2021-04-27 19:23:15.519764,r_lignin,Infinity,-Infinity,,,, -527,root composition,percent,"",2013-10-08 14:38:43,2021-04-27 19:23:15.519764,r_minerals,Infinity,-Infinity,,,, -528,root composition,percent,"",2013-10-08 14:39:04,2021-04-27 19:23:15.519764,r_organicacids,Infinity,-Infinity,,,, -532,leaf composition,percent,"",2013-10-20 18:13:51,2021-04-27 19:23:15.519764,l_cellulose,Infinity,-Infinity,,,, -533,leaf composition,percent,"",2013-10-20 18:16:03,2021-04-27 19:23:15.519764,l_hemicellulose,Infinity,-Infinity,,,, -534,leaf composition,percent,"",2013-10-20 18:16:43,2021-04-27 19:23:15.519764,l_phenolics,Infinity,-Infinity,,,, -535,leaf composition,percent,"",2013-10-20 18:17:28,2021-04-27 19:23:15.519764,l_starch,Infinity,-Infinity,,,, -536,leaf composition,percent,"",2013-10-20 18:18:19,2021-04-27 19:23:15.519764,l_solublesugars,Infinity,-Infinity,,,, -539,leaf composition,percent,"",2013-11-06 14:57:57,2021-04-27 19:23:15.519764,l_solublecarbohydrates,Infinity,-Infinity,,,, -556,Relative Humidity,percent,"",2014-05-21 14:55:44.055535,2021-04-27 19:23:15.519764,relative_humidity,Infinity,-Infinity,,,, +",2013-10-08 14:22:53,2021-04-27 19:23:15.519764,l_lipids,,,,,, +514,percent composition,percent,"",2013-10-08 14:23:20,2021-04-27 19:23:15.519764,l_lignin,,,,,, +515,percent composition,percent,"",2013-10-08 14:24:01,2021-04-27 19:23:15.519764,l_organicacids,,,,,, +516,percent composition,percent,"",2013-10-08 14:24:38,2021-04-27 19:23:15.519764,l_minerals,,,,,, +517,stem composition,percent,"",2013-10-08 14:33:43,2021-04-27 19:23:15.519764,s_protein,,,,,, +518,stem composition,percent,"",2013-10-08 14:34:08,2021-04-27 19:23:15.519764,s_carbohydrates,,,,,, +519,stem composition,percent,"",2013-10-08 14:34:37,2021-04-27 19:23:15.519764,s_lipids,,,,,, +520,stem composition,percent,"",2013-10-08 14:35:15,2021-04-27 19:23:15.519764,s_lignin,,,,,, +521,stem composition,percent,"",2013-10-08 14:35:53,2021-04-27 19:23:15.519764,s_minerals,,,,,, +522,stem composition,percent,"",2013-10-08 14:36:34,2021-04-27 19:23:15.519764,s_organicacids,,,,,, +523,root composition,percent,"",2013-10-08 14:36:58,2021-04-27 19:23:15.519764,r_protein,,,,,, +524,root composition,percent,"",2013-10-08 14:37:22,2021-04-27 19:23:15.519764,r_carbohydrates,,,,,, +525,root composition,percent,"",2013-10-08 14:37:52,2021-04-27 19:23:15.519764,r_lipids,,,,,, +526,root composition,percent,"",2013-10-08 14:38:24,2021-04-27 19:23:15.519764,r_lignin,,,,,, +527,root composition,percent,"",2013-10-08 14:38:43,2021-04-27 19:23:15.519764,r_minerals,,,,,, +528,root composition,percent,"",2013-10-08 14:39:04,2021-04-27 19:23:15.519764,r_organicacids,,,,,, +532,leaf composition,percent,"",2013-10-20 18:13:51,2021-04-27 19:23:15.519764,l_cellulose,,,,,, +533,leaf composition,percent,"",2013-10-20 18:16:03,2021-04-27 19:23:15.519764,l_hemicellulose,,,,,, +534,leaf composition,percent,"",2013-10-20 18:16:43,2021-04-27 19:23:15.519764,l_phenolics,,,,,, +535,leaf composition,percent,"",2013-10-20 18:17:28,2021-04-27 19:23:15.519764,l_starch,,,,,, +536,leaf composition,percent,"",2013-10-20 18:18:19,2021-04-27 19:23:15.519764,l_solublesugars,,,,,, +539,leaf composition,percent,"",2013-11-06 14:57:57,2021-04-27 19:23:15.519764,l_solublecarbohydrates,,,,,, +556,Relative Humidity,percent,"",2014-05-21 14:55:44.055535,2021-04-27 19:23:15.519764,relative_humidity,,,,,, 31,C:N ratio in leaves,[ratio],"",,2021-04-27 19:23:15.519764,c2n_leaf,300,3,,,, -54,ratio of total belowground biomass to total aboveground biomass; allocation,[ratio],"",,2021-04-27 19:23:15.519764,root2shoot,Infinity,0,"","","","" -152,ratio of reproductive to vegetative biomass,[ratio],"",,2021-04-27 19:23:15.519764,r2v,Infinity,0,,,, +54,ratio of total belowground biomass to total aboveground biomass; allocation,[ratio],"",,2021-04-27 19:23:15.519764,root2shoot,,0,"","","","" +152,ratio of reproductive to vegetative biomass,[ratio],"",,2021-04-27 19:23:15.519764,r2v,,0,,,, 26,slope of rel'n between stomatal conductance and A [Leuning 1995],[ratio],"",,2021-04-27 19:23:15.519764,stomatal_slope,200,2,,,, 604,"",[ratio],"",2016-03-07 17:23:58.975531,2021-04-27 19:23:15.519764,NDVI,1000,0,normalized_difference_vegetation_index,ratio,"","" -202,C:N ratio in stems,[ratio],"",2010-09-16 22:46:10,2021-04-27 19:23:15.519764,c2n_stem,Infinity,-Infinity,,,, -159,ratio C:N in fine root biomass,[ratio],"",,2021-04-27 19:23:15.519764,c2n_fineroot,Infinity,-Infinity,,,, -161,chlorophyll fluorescence,[ratio],"",,2021-04-27 19:23:15.519764,Fv/Fm,Infinity,-Infinity,,,, +202,C:N ratio in stems,[ratio],"",2010-09-16 22:46:10,2021-04-27 19:23:15.519764,c2n_stem,,,,,, +159,ratio C:N in fine root biomass,[ratio],"",,2021-04-27 19:23:15.519764,c2n_fineroot,,,,,, +161,chlorophyll fluorescence,[ratio],"",,2021-04-27 19:23:15.519764,Fv/Fm,,,,,, 619,"",ug cm-2,"",2017-02-20 18:59:45.305197,2021-04-27 19:23:15.519764,chlorophyll_a,1000,0,"","","",plant trait 620,"",ug cm-2,"",2017-02-20 19:00:04.183479,2021-04-27 19:23:15.519764,chlorophyll_b,1000,0,"","","","" -334,ratio of annual sum of precipitations to potential evapotranspiration (ppt/pet),[ratio],"",2012-01-06 20:58:45,2021-04-27 19:23:15.519764,ppt2pet,Infinity,0,,,, -21,ratio of fine root to leaf biomass also 'fine root allocation',[ratio],"used to parameterize ""fine root allocation"" in ED2",,2021-04-27 19:23:15.519764,fineroot2leaf,Infinity,-Infinity,"","","","" +334,ratio of annual sum of precipitations to potential evapotranspiration (ppt/pet),[ratio],"",2012-01-06 20:58:45,2021-04-27 19:23:15.519764,ppt2pet,,0,,,, +21,ratio of fine root to leaf biomass also 'fine root allocation',[ratio],"used to parameterize ""fine root allocation"" in ED2",,2021-04-27 19:23:15.519764,fineroot2leaf,,,"","","","" 41,"rate of fine root loss (temperature dependent, check growth_balive.f90 for details)",year-1,"",,2020-03-20 20:44:20.8328,root_turnover_rate,24,0,,,, -459,Canopy radiation extinction coefficient,[ratio],"",2012-07-17 22:36:23,2021-04-27 19:23:15.519764,extinction_coefficient,Infinity,-Infinity,"","",Extinction Coefficient,"" +459,Canopy radiation extinction coefficient,[ratio],"",2012-07-17 22:36:23,2021-04-27 19:23:15.519764,extinction_coefficient,,,"","",Extinction Coefficient,"" 568,leaf angle distribution,[ratio],"Ratio of projected area to hemi-surface area for an ellipsoid vertical: chi = 0 @@ -679,501 +679,501 @@ horizontal: chi = infinity Campbell and Norman eq 15.4 Implemented in BioCro as the parameter chi.l",2014-09-04 19:03:45.159063,2021-04-27 19:23:15.519764,chi_leaf,100,0,"","",Leaf Angle Distribution Chi,plant trait -32,C:N ratio in recruits,[ratio],"",,2021-04-27 19:23:15.519764,c2n_recruit,Infinity,-Infinity,,,, -33,C:N ratio of the storage pool,[ratio],"",,2021-04-27 19:23:15.519764,c2n_storage,Infinity,-Infinity,,,, -241,C:N ratio in flowers,[ratio],"",2010-11-23 15:03:56,2021-04-27 19:23:15.519764,c2n_flower,Infinity,-Infinity,,,, -242,C:N ratio in stem,[ratio],"",2010-11-23 15:03:56,2021-04-27 19:23:15.519764,c2n_stem,Infinity,-Infinity,,,, -326,carbon to nitrogen ratio present in the soil,[ratio],"",2012-01-05 20:01:28,2021-04-27 19:23:15.519764,c2n_soil,Infinity,-Infinity,,,, -327,carbon to nitrogen ratio present in the root tissue,[ratio],root_diameter_min' and 'root_diameter_max,2012-01-05 20:04:00,2021-04-27 19:23:15.519764,c2n_root,Infinity,-Infinity,,,, -463,Scalar determining effect of temperature on vegetation respiration,[ratio],Parameter Q10 is defined as the ratio of respiration at a given temperature divided by respiration at a temperature 10 degrees lower,2012-07-19 15:50:23,2021-04-27 19:23:15.519764,veg_respiration_Q10,Infinity,-Infinity,,,, -464,Scalar determining effect of temperature on fine root respiration,[ratio],Parameter Q10 is defined as the ratio of respiration at a given temperature divided by respiration at a temperature 10 degrees lower,2012-07-19 15:51:38,2021-04-27 19:23:15.519764,fine_root_respiration_Q10,Infinity,-Infinity,,,, -465,Scalar determining effect of temperature on coarse (large) root respiration,[ratio],Parameter Q10 is defined as the ratio of respiration at a given temperature divided by respiration at a temperature 10 degrees lower,2012-07-19 15:56:14,2021-04-27 19:23:15.519764,coarse_root_respiration_Q10,Infinity,-Infinity,,,, -466,Fraction of leaf fall per year,[ratio],"",2012-07-19 20:24:26,2021-04-27 19:23:15.519764,fracLeafFall,Infinity,-Infinity,,,, -14,photosynthetic Nitrogen Use Efficiency,umol [CO2] g-1 [N] s-1,"",,2021-04-27 19:25:35.340137,PNUE,Infinity,-Infinity,"","","", -311,Intact Roots,umol [CO2] kg-1 s-1,"",2011-11-01 16:52:48,2021-04-27 19:35:48.470003,root_respiration rate umol CO2 kg-1 s-1.Intact Roots,Infinity,0,,,, +32,C:N ratio in recruits,[ratio],"",,2021-04-27 19:23:15.519764,c2n_recruit,,,,,, +33,C:N ratio of the storage pool,[ratio],"",,2021-04-27 19:23:15.519764,c2n_storage,,,,,, +241,C:N ratio in flowers,[ratio],"",2010-11-23 15:03:56,2021-04-27 19:23:15.519764,c2n_flower,,,,,, +242,C:N ratio in stem,[ratio],"",2010-11-23 15:03:56,2021-04-27 19:23:15.519764,c2n_stem,,,,,, +326,carbon to nitrogen ratio present in the soil,[ratio],"",2012-01-05 20:01:28,2021-04-27 19:23:15.519764,c2n_soil,,,,,, +327,carbon to nitrogen ratio present in the root tissue,[ratio],root_diameter_min' and 'root_diameter_max,2012-01-05 20:04:00,2021-04-27 19:23:15.519764,c2n_root,,,,,, +463,Scalar determining effect of temperature on vegetation respiration,[ratio],Parameter Q10 is defined as the ratio of respiration at a given temperature divided by respiration at a temperature 10 degrees lower,2012-07-19 15:50:23,2021-04-27 19:23:15.519764,veg_respiration_Q10,,,,,, +464,Scalar determining effect of temperature on fine root respiration,[ratio],Parameter Q10 is defined as the ratio of respiration at a given temperature divided by respiration at a temperature 10 degrees lower,2012-07-19 15:51:38,2021-04-27 19:23:15.519764,fine_root_respiration_Q10,,,,,, +465,Scalar determining effect of temperature on coarse (large) root respiration,[ratio],Parameter Q10 is defined as the ratio of respiration at a given temperature divided by respiration at a temperature 10 degrees lower,2012-07-19 15:56:14,2021-04-27 19:23:15.519764,coarse_root_respiration_Q10,,,,,, +466,Fraction of leaf fall per year,[ratio],"",2012-07-19 20:24:26,2021-04-27 19:23:15.519764,fracLeafFall,,,,,, +14,photosynthetic Nitrogen Use Efficiency,umol [CO2] g-1 [N] s-1,"",,2021-04-27 19:25:35.340137,PNUE,,,"","","", +311,Intact Roots,umol [CO2] kg-1 s-1,"",2011-11-01 16:52:48,2021-04-27 19:35:48.470003,root_respiration rate umol CO2 kg-1 s-1.Intact Roots,,0,,,, 315,rate of leaf respiration at reference temperature,umol [CO2] kg-1 s-1,"If associated SLA data is available, enter that. or if Covariates to include: leafT and canopy_layer Equivalent to units of nmol CO_2 g-1 s-1. If converted from O2 consumption, assume 1 mol O2 = 1 mol CO2. -",2012-01-04 19:26:25,2021-04-27 19:36:00.409015,leaf_respiration_rate_kg,Infinity,0,,,, -381,Value of Vcmax at 25 degC.,umol [CO2] m-2 s-1,"This is the value of Vcmax at 25 degC derived from fitting the Arrhenius model to measured Vcmax data at various temperatures. This is an Arrhenius model parameter (see Ev_Arrhenius for more info) and values of Vcmax measured at 25 degC should be entered under Vcmax, not here.",2012-04-10 22:24:09,2021-04-27 19:39:06.091477,Vcmax25,Infinity,-Infinity,,,, -408,above- and below-ground woody NPP,Mg [C] ha-1 yr-1,Woody NPP: annual increments in woody biomass (above- and below-ground) estimated using allometric equations. ,2012-06-09 22:10:50,2021-04-27 19:39:55.921073,NPP_woody_C,Infinity,-Infinity,,,, +",2012-01-04 19:26:25,2021-04-27 19:36:00.409015,leaf_respiration_rate_kg,,0,,,, +381,Value of Vcmax at 25 degC.,umol [CO2] m-2 s-1,"This is the value of Vcmax at 25 degC derived from fitting the Arrhenius model to measured Vcmax data at various temperatures. This is an Arrhenius model parameter (see Ev_Arrhenius for more info) and values of Vcmax measured at 25 degC should be entered under Vcmax, not here.",2012-04-10 22:24:09,2021-04-27 19:39:06.091477,Vcmax25,,,,,, +408,above- and below-ground woody NPP,Mg [C] ha-1 yr-1,Woody NPP: annual increments in woody biomass (above- and below-ground) estimated using allometric equations. ,2012-06-09 22:10:50,2021-04-27 19:39:55.921073,NPP_woody_C,,,,,, 423,Cumulative NEE over a specified time step,Mg C ha-1 [timestep-1],"Cumulative net ecosystem exchange over a specified time frame (measured using eddy-covariance or gas exchange in a closed chamber). Sign convention: NEGATIVE INDICATES C UPTAKE BY ECOSYSTEM. Enter start and end dates/ times. -REQUIRED COVARIATE: timestep (days).",2012-06-13 19:28:25,2021-04-27 19:40:45.307725,NEE_cum,Infinity,-Infinity,,,, -611,"",cm,"proposed standard name for diameter of plant stem. Commonly diameter at breast height, but could be taken at any height.",2016-05-18 15:50:04.374437,2021-04-27 19:47:13.894205,stem_diameter,Infinity,-Infinity,"","","","" -1000000002,leaf allocation fraction,1,proportion of NPP allocated to foliage,2015-07-06 16:07:21.298606,2015-07-06 20:00:03.497001,leaf_allocation_fraction,Infinity,-Infinity,"","",Leaf Alloc Frac,model -1000000005,litter respiration rate coefficient,day-1,"Litter respiration (to CO2) rate coefficient, assuming a model of k*[LITTER]*f(T). Reference T is 10C unless otherwise specified as a covariate, consistent with initial definition for DALEC.",2015-07-07 21:11:37.460492,2015-07-07 21:11:37.460492,litter_respiration_rate,Infinity,-Infinity,"","",Litter Resp,model -1000000006,litter decomposition rate to SOM,day-1,"This is specifically the turnover rate from litter to SOM, not the mass loss rate of the litter pool, which also includes losses to DOC and CO2. As this variable was initially created to support DALEC, a reference temperature of 10 C is assumed.",2015-07-07 21:13:32.54707,2015-07-07 21:13:32.54707,litter_decomposition_to_SOM,Infinity,-Infinity,"","",Litter Decomp,model -1000000007,SOM respiration rate coefficient,day-1,"Soil Organic Matter (SOM) respiration (to CO2) rate coefficient, assuming a model of k*[SOM]*f(T). Reference T is 10C unless otherwise specified as a covariate, consistent with initial definition for DALEC.",2015-07-07 21:14:40.016204,2015-07-07 21:14:40.016204,som_respiration_rate,Infinity,-Infinity,"","",SOM Resp,model -1000000009,Annual mortality rate,1/yr,Created for fitting modeled tree mortality to that measured or estimated in FIA or other long-term plots.,2015-09-25 15:08:03.793813,2015-09-25 15:08:03.793813,mortality,Infinity,-Infinity,"","","",ecosystem -1000000010,Light use efficiency,gC/mol,Potential light-use efficiency in PRELES model,2015-11-25 20:41:40.028933,2015-11-25 20:41:40.028933,bGPP,Infinity,-Infinity,light_use_efficiency,gC/mol,"",model -1000000012,degree day maximum,days,"",2016-02-19 19:19:24.266658,2016-02-19 19:19:24.266658,DMAX,Infinity,-Infinity,"","","","" -1000000013,degree day minimum,days,"",2016-02-19 19:19:44.965346,2016-02-19 19:19:44.965346,DMIN,Infinity,-Infinity,"","","","" -1000000014,maximum height,meters,"",2016-02-19 19:22:26.236742,2016-02-19 19:22:26.236742,HTMAX,Infinity,-Infinity,"","","","" -1000000015,maximum DBH,meters,"",2016-02-19 19:22:48.879625,2016-02-19 19:22:48.879625,DBHMAX,Infinity,-Infinity,"","","","" -1000000016,maximum age,years,"",2016-02-19 19:23:53.075457,2016-02-19 19:23:53.075457,AGEMX,Infinity,-Infinity,"","","","" -1000000175,"",kg m-3,"",2017-04-30 21:19:36.218409,2017-04-30 21:19:36.218409,soil_bulk_density,Infinity,-Infinity,"","",BulkDensity,ecosystem -1000000018,number of sprouts per stump,sprouts/year,"",2016-02-19 19:24:47.12279,2016-02-19 19:24:47.12279,SPRTND,Infinity,-Infinity,"","","","" -1000000019,minimum dimeter for a stump to sprout,cm,"",2016-02-19 19:25:11.466627,2016-02-19 19:25:11.466627,SPRTMN,Infinity,-Infinity,"","","","" -1000000020,drought tolerance (fraction of growing season),percent,"",2016-02-19 19:26:17.526591,2016-02-19 19:26:17.526591,D3,Infinity,-Infinity,"","","","" -1000000021,minimum January (northern hemisphere) temperature tolerated,degrees Celsius,"",2016-02-19 19:26:54.654929,2016-02-19 19:26:54.654929,FROST,Infinity,-Infinity,"","","","" -1000000022,"Leaf litter quality class [12 leaf-litter types (1-12) in order of decreasing decay rate and increasing nitrogen-immobolization rate plus root litter, fresh wood, twigs, and well decayed wood. See Table 4 and Appendix B in Pastor and Post (1985)]",index,"",2016-02-19 19:27:24.048256,2016-02-19 19:27:24.048256,TL,Infinity,-Infinity,"","","","" -1000000023,Parameters for nitrogen growth multipliers,"","",2016-02-19 19:27:49.355197,2016-02-19 19:27:49.355197,CM1,Infinity,-Infinity,"","","","" -1000000024,Parameters for nitrogen growth multipliers,"","",2016-02-19 19:27:57.821908,2016-02-19 19:27:57.821908,CM2,Infinity,-Infinity,"","","","" -1000000025,Parameters for nitrogen growth multipliers,"","",2016-02-19 19:28:06.307717,2016-02-19 19:28:06.307717,CM3,Infinity,-Infinity,"","","","" -1000000026,Parameters for nitrogen growth multipliers,"","",2016-02-19 19:28:18.022811,2016-02-19 19:28:18.022811,CM4,Infinity,-Infinity,"","","","" -1000000008,Annual incremental diameter growth,cm / yr,Created for fitting modeled tree growth to annual DBH measurements.,2015-08-28 17:40:10.654796,2015-09-25 14:05:00.96218,diameter_growth,Infinity,-Infinity,"","","",ecosystem -1000000027,Parameters for nitrogen growth multipliers,"","",2016-02-19 19:28:27.452074,2016-02-19 19:28:27.452074,CM5,Infinity,-Infinity,"","","","" -1000000045,Soil water holding capacity,cm,cm water equiv,2016-08-02 16:44:41.997595,2016-08-02 16:44:41.997595,soilWHC,Infinity,-Infinity,"","",soilWHC,model -1000000033,maximum temperature limit for photosynthesis,degrees C,"",2016-04-29 18:23:29.455043,2016-04-29 18:23:29.455043,pstemp_max,Infinity,-Infinity,"","","","" -1000000052,"","","Tree tag number, inventory data",2016-10-27 06:35:25.100161,2016-10-27 06:35:25.100161,Tag,Infinity,-Infinity,"","","",covariate -1000000054,"","","Categorical variable for whether a plant is alive, dead, etc. PEcAn/BETY standard codes have not yet been adopted",2016-10-27 19:11:38.499131,2016-10-27 19:11:38.499131,plant_status,Infinity,-Infinity,"","","",covariate -1000000063,oarse root osmotic potential at full turgor,MPa,coarse root osmotic potential at full turgor (πoroot),2016-11-17 07:15:32.410967,2016-11-17 07:15:32.410967,root_osmotic_potential,Infinity,-Infinity,"","","",plant trait -1000000064,sapwood osmotic potential at full turgor,MPa,sapwood osmotic potential at full turgor (πostem),2016-11-17 07:16:12.400966,2016-11-17 07:16:12.400966,sapwood_osmotic_potential,Infinity,-Infinity,"","","",plant trait -1000000065,leaf osmotic potential at full turgor,MPa,leaf osmotic potential at full turgor (πoleaf),2016-11-17 07:17:08.234081,2016-11-17 07:17:08.234081,leaf_osmotic_potential,Infinity,-Infinity,"","","",plant trait -1000000043,Scalar determining effect of temperature on soil heterotrophic respiration,ratio,Parameter Q10 is defined as the ratio of respiration at a given temperature divided by respiration at a temperature 10 degrees lower,2016-08-02 15:50:21.591359,2016-08-02 15:50:21.591359,soil_respiration_Q10,Infinity,-Infinity,"","",soilQ10,model -1000000066,Maximum leaf hydraulic conductivity,mmol m-2 s-1 MPa-1,Maximum leaf hydraulic conductivity per unit leaf area,2016-11-17 07:21:58.309382,2016-11-17 07:21:58.309382,kmax_leaf,Infinity,-Infinity,"","","",plant trait -1000000067,Maximum root hydraulic conductivity,kg m-1 s-1 MPa-1,Maximum root hydraulic conductivity per unit xs sapwood,2016-11-17 07:23:06.469888,2016-11-17 07:23:06.469888,kmax_root,Infinity,-Infinity,"","","",plant trait -1000000068,Maximum stem hydraulic conductivity,kg m-1 s-1 MPa-1,Maximum stem hydraulic conductivity per unit xs sapwood area,2016-11-17 07:24:20.750538,2016-11-17 07:24:20.750538,kmax_stem,Infinity,-Infinity,"","","",plant trait -1000000069,P50 of stomatal conductance,MPa,leaf water potential at 50% loss of stomatal conductance ,2016-11-17 07:38:24.306269,2016-11-17 07:38:24.306269,p50_gs,Infinity,-Infinity,"","","",plant trait -1000000051,minute of hour,minutes,"",2016-10-01 15:48:25.679955,2016-10-01 15:48:25.679955,minute,Infinity,-Infinity,"","","","" -1000000041,ustar,m s-1,"",2016-06-05 19:06:50.59683,2016-06-05 19:06:50.59683,UST,Infinity,-Infinity,"","","","" -1000000042,Vertical Transfer CO2,umol C m-2 s-1,"",2016-06-06 16:38:45.706465,2016-06-06 16:38:45.706465,FC,Infinity,-Infinity,"","","","" -1000000070,P50 leaf hydraulic conductivity,MPa,leaf water potential at 50% loss of leaf hydraulic conductivity,2016-11-17 07:39:52.320715,2016-11-17 07:39:52.320715,p50_leaf,Infinity,-Infinity,"","","",plant trait -1000000071,P50 root hydraulic conductivity,MPa,root water potential at 50% loss of root hydraulic conductivity [MPa],2016-11-17 07:41:11.487641,2016-11-17 07:41:11.487641,p50_root,Infinity,-Infinity,"","","",plant trait -1000000028,maximum seeding rate per plant,seed/plan/year,"",2016-02-19 19:52:14.606613,2016-02-19 19:52:14.606613,MPLANT,Infinity,-Infinity,"","","","" -1000000032,Maximum diameter for a stump to sprout,cm,"",2016-02-19 20:06:27.611241,2016-02-19 20:06:27.611241,SPRTMX,Infinity,-Infinity,"","","","" +REQUIRED COVARIATE: timestep (days).",2012-06-13 19:28:25,2021-04-27 19:40:45.307725,NEE_cum,,,,,, +611,"",cm,"proposed standard name for diameter of plant stem. Commonly diameter at breast height, but could be taken at any height.",2016-05-18 15:50:04.374437,2021-04-27 19:47:13.894205,stem_diameter,,,"","","","" +1000000002,leaf allocation fraction,1,proportion of NPP allocated to foliage,2015-07-06 16:07:21.298606,2015-07-06 20:00:03.497001,leaf_allocation_fraction,,,"","",Leaf Alloc Frac,model +1000000005,litter respiration rate coefficient,day-1,"Litter respiration (to CO2) rate coefficient, assuming a model of k*[LITTER]*f(T). Reference T is 10C unless otherwise specified as a covariate, consistent with initial definition for DALEC.",2015-07-07 21:11:37.460492,2015-07-07 21:11:37.460492,litter_respiration_rate,,,"","",Litter Resp,model +1000000006,litter decomposition rate to SOM,day-1,"This is specifically the turnover rate from litter to SOM, not the mass loss rate of the litter pool, which also includes losses to DOC and CO2. As this variable was initially created to support DALEC, a reference temperature of 10 C is assumed.",2015-07-07 21:13:32.54707,2015-07-07 21:13:32.54707,litter_decomposition_to_SOM,,,"","",Litter Decomp,model +1000000007,SOM respiration rate coefficient,day-1,"Soil Organic Matter (SOM) respiration (to CO2) rate coefficient, assuming a model of k*[SOM]*f(T). Reference T is 10C unless otherwise specified as a covariate, consistent with initial definition for DALEC.",2015-07-07 21:14:40.016204,2015-07-07 21:14:40.016204,som_respiration_rate,,,"","",SOM Resp,model +1000000009,Annual mortality rate,1/yr,Created for fitting modeled tree mortality to that measured or estimated in FIA or other long-term plots.,2015-09-25 15:08:03.793813,2015-09-25 15:08:03.793813,mortality,,,"","","",ecosystem +1000000010,Light use efficiency,gC/mol,Potential light-use efficiency in PRELES model,2015-11-25 20:41:40.028933,2015-11-25 20:41:40.028933,bGPP,,,light_use_efficiency,gC/mol,"",model +1000000012,degree day maximum,days,"",2016-02-19 19:19:24.266658,2016-02-19 19:19:24.266658,DMAX,,,"","","","" +1000000013,degree day minimum,days,"",2016-02-19 19:19:44.965346,2016-02-19 19:19:44.965346,DMIN,,,"","","","" +1000000014,maximum height,meters,"",2016-02-19 19:22:26.236742,2016-02-19 19:22:26.236742,HTMAX,,,"","","","" +1000000015,maximum DBH,meters,"",2016-02-19 19:22:48.879625,2016-02-19 19:22:48.879625,DBHMAX,,,"","","","" +1000000016,maximum age,years,"",2016-02-19 19:23:53.075457,2016-02-19 19:23:53.075457,AGEMX,,,"","","","" +1000000175,"",kg m-3,"",2017-04-30 21:19:36.218409,2017-04-30 21:19:36.218409,soil_bulk_density,,,"","",BulkDensity,ecosystem +1000000018,number of sprouts per stump,sprouts/year,"",2016-02-19 19:24:47.12279,2016-02-19 19:24:47.12279,SPRTND,,,"","","","" +1000000019,minimum dimeter for a stump to sprout,cm,"",2016-02-19 19:25:11.466627,2016-02-19 19:25:11.466627,SPRTMN,,,"","","","" +1000000020,drought tolerance (fraction of growing season),percent,"",2016-02-19 19:26:17.526591,2016-02-19 19:26:17.526591,D3,,,"","","","" +1000000021,minimum January (northern hemisphere) temperature tolerated,degrees Celsius,"",2016-02-19 19:26:54.654929,2016-02-19 19:26:54.654929,FROST,,,"","","","" +1000000022,"Leaf litter quality class [12 leaf-litter types (1-12) in order of decreasing decay rate and increasing nitrogen-immobolization rate plus root litter, fresh wood, twigs, and well decayed wood. See Table 4 and Appendix B in Pastor and Post (1985)]",index,"",2016-02-19 19:27:24.048256,2016-02-19 19:27:24.048256,TL,,,"","","","" +1000000023,Parameters for nitrogen growth multipliers,"","",2016-02-19 19:27:49.355197,2016-02-19 19:27:49.355197,CM1,,,"","","","" +1000000024,Parameters for nitrogen growth multipliers,"","",2016-02-19 19:27:57.821908,2016-02-19 19:27:57.821908,CM2,,,"","","","" +1000000025,Parameters for nitrogen growth multipliers,"","",2016-02-19 19:28:06.307717,2016-02-19 19:28:06.307717,CM3,,,"","","","" +1000000026,Parameters for nitrogen growth multipliers,"","",2016-02-19 19:28:18.022811,2016-02-19 19:28:18.022811,CM4,,,"","","","" +1000000008,Annual incremental diameter growth,cm / yr,Created for fitting modeled tree growth to annual DBH measurements.,2015-08-28 17:40:10.654796,2015-09-25 14:05:00.96218,diameter_growth,,,"","","",ecosystem +1000000027,Parameters for nitrogen growth multipliers,"","",2016-02-19 19:28:27.452074,2016-02-19 19:28:27.452074,CM5,,,"","","","" +1000000045,Soil water holding capacity,cm,cm water equiv,2016-08-02 16:44:41.997595,2016-08-02 16:44:41.997595,soilWHC,,,"","",soilWHC,model +1000000033,maximum temperature limit for photosynthesis,degrees C,"",2016-04-29 18:23:29.455043,2016-04-29 18:23:29.455043,pstemp_max,,,"","","","" +1000000052,"","","Tree tag number, inventory data",2016-10-27 06:35:25.100161,2016-10-27 06:35:25.100161,Tag,,,"","","",covariate +1000000054,"","","Categorical variable for whether a plant is alive, dead, etc. PEcAn/BETY standard codes have not yet been adopted",2016-10-27 19:11:38.499131,2016-10-27 19:11:38.499131,plant_status,,,"","","",covariate +1000000063,oarse root osmotic potential at full turgor,MPa,coarse root osmotic potential at full turgor (πoroot),2016-11-17 07:15:32.410967,2016-11-17 07:15:32.410967,root_osmotic_potential,,,"","","",plant trait +1000000064,sapwood osmotic potential at full turgor,MPa,sapwood osmotic potential at full turgor (πostem),2016-11-17 07:16:12.400966,2016-11-17 07:16:12.400966,sapwood_osmotic_potential,,,"","","",plant trait +1000000065,leaf osmotic potential at full turgor,MPa,leaf osmotic potential at full turgor (πoleaf),2016-11-17 07:17:08.234081,2016-11-17 07:17:08.234081,leaf_osmotic_potential,,,"","","",plant trait +1000000043,Scalar determining effect of temperature on soil heterotrophic respiration,ratio,Parameter Q10 is defined as the ratio of respiration at a given temperature divided by respiration at a temperature 10 degrees lower,2016-08-02 15:50:21.591359,2016-08-02 15:50:21.591359,soil_respiration_Q10,,,"","",soilQ10,model +1000000066,Maximum leaf hydraulic conductivity,mmol m-2 s-1 MPa-1,Maximum leaf hydraulic conductivity per unit leaf area,2016-11-17 07:21:58.309382,2016-11-17 07:21:58.309382,kmax_leaf,,,"","","",plant trait +1000000067,Maximum root hydraulic conductivity,kg m-1 s-1 MPa-1,Maximum root hydraulic conductivity per unit xs sapwood,2016-11-17 07:23:06.469888,2016-11-17 07:23:06.469888,kmax_root,,,"","","",plant trait +1000000068,Maximum stem hydraulic conductivity,kg m-1 s-1 MPa-1,Maximum stem hydraulic conductivity per unit xs sapwood area,2016-11-17 07:24:20.750538,2016-11-17 07:24:20.750538,kmax_stem,,,"","","",plant trait +1000000069,P50 of stomatal conductance,MPa,leaf water potential at 50% loss of stomatal conductance ,2016-11-17 07:38:24.306269,2016-11-17 07:38:24.306269,p50_gs,,,"","","",plant trait +1000000051,minute of hour,minutes,"",2016-10-01 15:48:25.679955,2016-10-01 15:48:25.679955,minute,,,"","","","" +1000000041,ustar,m s-1,"",2016-06-05 19:06:50.59683,2016-06-05 19:06:50.59683,UST,,,"","","","" +1000000042,Vertical Transfer CO2,umol C m-2 s-1,"",2016-06-06 16:38:45.706465,2016-06-06 16:38:45.706465,FC,,,"","","","" +1000000070,P50 leaf hydraulic conductivity,MPa,leaf water potential at 50% loss of leaf hydraulic conductivity,2016-11-17 07:39:52.320715,2016-11-17 07:39:52.320715,p50_leaf,,,"","","",plant trait +1000000071,P50 root hydraulic conductivity,MPa,root water potential at 50% loss of root hydraulic conductivity [MPa],2016-11-17 07:41:11.487641,2016-11-17 07:41:11.487641,p50_root,,,"","","",plant trait +1000000028,maximum seeding rate per plant,seed/plan/year,"",2016-02-19 19:52:14.606613,2016-02-19 19:52:14.606613,MPLANT,,,"","","","" +1000000032,Maximum diameter for a stump to sprout,cm,"",2016-02-19 20:06:27.611241,2016-02-19 20:06:27.611241,SPRTMX,,,"","","","" 1000000232,"","","soil respiration at 0 degrees C and max soil moisture (g C respired * g^-1 soil C * day^-1) - ",2017-09-29 19:01:20.699658,2017-09-29 19:01:20.699658,baseSoilResp,Infinity,-Infinity,"","","","" + ",2017-09-29 19:01:20.699658,2017-09-29 19:01:20.699658,baseSoilResp,,,"","","","" 1000000047,"",kg C m-2 s-1,"PEcAn output variable (see model2netcdf.DALEC.R) -",2016-08-09 00:31:10.209346,2016-08-09 01:02:30.338347,WoodyLitter,Infinity,-Infinity,"","","","" -1000000048,"",kg C m-2 s-1,PEcAn output variable (see model2netcdf.DALEC.R),2016-08-09 00:32:19.59781,2016-08-09 01:02:41.664249,LeafBiomass,Infinity,-Infinity,"","","","" -1000000053,"","","Concatenation of genus_name and species_name for datasets that don't have these as separate columns. Feels redundant, but we need to have this for Formats, even if PEcAn/BETY parsers decide to split Latin name during file read.",2016-10-27 17:40:18.656719,2016-10-27 17:40:18.656719,latin_name,Infinity,-Infinity,"","",Latin name,covariate -1000000072,P50 stem hydraulic conductivity,MPa,stem water potential at 50% loss of stem hydraulic conductivity,2016-11-17 07:42:04.338655,2016-11-17 07:42:04.338655,p50_stem,Infinity,-Infinity,"","","",plant trait -1000000055,Wood Specific Gravity (ie density of wood relative to density of water),unitless,"",2016-11-17 06:43:26.661795,2016-11-17 06:43:26.661795,wood_density,Infinity,-Infinity,"","","",plant trait -1000000056,CLM rooting distribution parameter,1/m,"",2016-11-17 06:46:09.549442,2016-11-17 06:46:09.549442,roota_par,Infinity,-Infinity,"","","",model -1000000057,CLM rooting distribution parameter,1/m,"",2016-11-17 06:46:34.712897,2016-11-17 06:46:34.712897,rootb_par,Infinity,-Infinity,"","","",model -1000000058,Soil water potential at full stomatal closure,m,Soil water potential at full stomatal closure,2016-11-17 07:02:02.543627,2016-11-17 07:02:02.543627,psi_stomata_closure,Infinity,-Infinity,"","","",model -1000000059,Soil water potential at full stomatal opening,m,Soil water potential at full stomatal opening,2016-11-17 07:03:16.566916,2016-11-17 07:03:16.566916,psi_stomata_open,Infinity,-Infinity,"","","",model -1000000060,coarse root bulk elastic modulus,MPa,coarse root bulk elastic modulus,2016-11-17 07:07:23.301024,2016-11-17 07:07:23.301024,root_bulk_modulus,Infinity,-Infinity,"","","",plant trait -1000000061,sapwood bulk elastic modulus,MPa,sapwood bulk elastic modulus,2016-11-17 07:07:54.299908,2016-11-17 07:07:54.299908,sapwood_bulk_modulus,Infinity,-Infinity,"","","",plant trait -1000000062,leaf bulk elastic modulus,MPa,leaf bulk elastic modulus,2016-11-17 07:08:34.512902,2016-11-17 07:08:34.512902,leaf_bulk_modulus,Infinity,-Infinity,"","","",plant trait +",2016-08-09 00:31:10.209346,2016-08-09 01:02:30.338347,WoodyLitter,,,"","","","" +1000000048,"",kg C m-2 s-1,PEcAn output variable (see model2netcdf.DALEC.R),2016-08-09 00:32:19.59781,2016-08-09 01:02:41.664249,LeafBiomass,,,"","","","" +1000000053,"","","Concatenation of genus_name and species_name for datasets that don't have these as separate columns. Feels redundant, but we need to have this for Formats, even if PEcAn/BETY parsers decide to split Latin name during file read.",2016-10-27 17:40:18.656719,2016-10-27 17:40:18.656719,latin_name,,,"","",Latin name,covariate +1000000072,P50 stem hydraulic conductivity,MPa,stem water potential at 50% loss of stem hydraulic conductivity,2016-11-17 07:42:04.338655,2016-11-17 07:42:04.338655,p50_stem,,,"","","",plant trait +1000000055,Wood Specific Gravity (ie density of wood relative to density of water),unitless,"",2016-11-17 06:43:26.661795,2016-11-17 06:43:26.661795,wood_density,,,"","","",plant trait +1000000056,CLM rooting distribution parameter,1/m,"",2016-11-17 06:46:09.549442,2016-11-17 06:46:09.549442,roota_par,,,"","","",model +1000000057,CLM rooting distribution parameter,1/m,"",2016-11-17 06:46:34.712897,2016-11-17 06:46:34.712897,rootb_par,,,"","","",model +1000000058,Soil water potential at full stomatal closure,m,Soil water potential at full stomatal closure,2016-11-17 07:02:02.543627,2016-11-17 07:02:02.543627,psi_stomata_closure,,,"","","",model +1000000059,Soil water potential at full stomatal opening,m,Soil water potential at full stomatal opening,2016-11-17 07:03:16.566916,2016-11-17 07:03:16.566916,psi_stomata_open,,,"","","",model +1000000060,coarse root bulk elastic modulus,MPa,coarse root bulk elastic modulus,2016-11-17 07:07:23.301024,2016-11-17 07:07:23.301024,root_bulk_modulus,,,"","","",plant trait +1000000061,sapwood bulk elastic modulus,MPa,sapwood bulk elastic modulus,2016-11-17 07:07:54.299908,2016-11-17 07:07:54.299908,sapwood_bulk_modulus,,,"","","",plant trait +1000000062,leaf bulk elastic modulus,MPa,leaf bulk elastic modulus,2016-11-17 07:08:34.512902,2016-11-17 07:08:34.512902,leaf_bulk_modulus,,,"","","",plant trait 1000000083,"",proportion,"Leaf turnover vs labile carbon use prioritization. This is the fraction of maintenance demand that will be replenished at all costs and before storage is filled. [0-1] -FATES model",2016-11-17 22:15:25.664043,2016-11-17 22:15:25.664043,leaf_stor_priority,Infinity,-Infinity,"","","",model +FATES model",2016-11-17 22:15:25.664043,2016-11-17 22:15:25.664043,leaf_stor_priority,,,"","","",model 1000000084,"",proportion,"The fraction of trees in understory that die from impacts of large treefalls. In the model this is not a rate 1/year, so we need to convert it -FATES model",2016-11-17 22:20:56.065217,2016-11-17 22:20:56.065217,understory_treefall_mortality,Infinity,-Infinity,"","","",ecosystem -1000000085,Maximum stomatal conductance,m s-1,"",2016-11-17 22:21:31.059363,2016-11-17 22:21:31.059363,gsmax,Infinity,-Infinity,"","","",plant trait +FATES model",2016-11-17 22:20:56.065217,2016-11-17 22:20:56.065217,understory_treefall_mortality,,,"","","",ecosystem +1000000085,Maximum stomatal conductance,m s-1,"",2016-11-17 22:21:31.059363,2016-11-17 22:21:31.059363,gsmax,,,"","","",plant trait 1000000086,"",ratio,"Ratio of displacement height to canopy top height (turbulence stuff, should be diagnosed from size and crown allometry) -FATES",2016-11-17 22:25:22.946682,2016-11-17 22:25:22.946682,displar,Infinity,-Infinity,"","","",ecosystem -1000000087,"",unitless,Ratio of momentum roughness length to canopy top height,2016-11-17 22:26:15.591092,2016-11-17 22:26:15.591092,z0mr,Infinity,-Infinity,"","","",ecosystem -1000000088,"",m-2,Stem density of different PFTs during a bare ground initialization,2016-11-17 22:28:19.464256,2016-11-17 22:28:19.464256,inital_stem_density,Infinity,-Infinity,"","","",model +FATES",2016-11-17 22:25:22.946682,2016-11-17 22:25:22.946682,displar,,,"","","",ecosystem +1000000087,"",unitless,Ratio of momentum roughness length to canopy top height,2016-11-17 22:26:15.591092,2016-11-17 22:26:15.591092,z0mr,,,"","","",ecosystem +1000000088,"",m-2,Stem density of different PFTs during a bare ground initialization,2016-11-17 22:28:19.464256,2016-11-17 22:28:19.464256,inital_stem_density,,,"","","",model 1000000089,"",proportion,"Fraction of tree diameter that is bark. Used in fire. -FATES model",2016-11-17 22:31:39.275842,2016-11-17 22:31:39.275842,bark_scaler,Infinity,-Infinity,"","","",model -1000000073,root relative water content at turgor loss,unitless,coarse root relative water content at turgor loss,2016-11-17 21:46:48.582704,2016-11-17 21:46:48.582704,water_content_TLP_root,Infinity,-Infinity,"","","",plant trait -1000000074,sapwood relative water content at turgor loss,unitless,sapwood relative water content at turgor loss,2016-11-17 21:48:16.421764,2016-11-17 21:48:16.421764,water_content_TLP_sapwood,Infinity,-Infinity,"","","",plant trait -1000000075,leaf relative water content at turgor loss,unitless,leaf relative water content at turgor loss,2016-11-17 21:48:38.373099,2016-11-17 21:48:38.373099,water_content_TLP_leaf,Infinity,-Infinity,"","","",plant trait +FATES model",2016-11-17 22:31:39.275842,2016-11-17 22:31:39.275842,bark_scaler,,,"","","",model +1000000073,root relative water content at turgor loss,unitless,coarse root relative water content at turgor loss,2016-11-17 21:46:48.582704,2016-11-17 21:46:48.582704,water_content_TLP_root,,,"","","",plant trait +1000000074,sapwood relative water content at turgor loss,unitless,sapwood relative water content at turgor loss,2016-11-17 21:48:16.421764,2016-11-17 21:48:16.421764,water_content_TLP_sapwood,,,"","","",plant trait +1000000075,leaf relative water content at turgor loss,unitless,leaf relative water content at turgor loss,2016-11-17 21:48:38.373099,2016-11-17 21:48:38.373099,water_content_TLP_leaf,,,"","","",plant trait 1000000090,C3 / C4 / CAM,unitless,"3 = C3 4 = C4 -5 = CAM",2016-11-17 22:35:05.181175,2016-11-17 22:35:05.181175,photosynthetic_pathway,Infinity,-Infinity,"","","",plant trait -1000000091,"0 = not crop, 1 = crop",unitless,"Binary crop flag: 0. = not crop, 1. = crop",2016-11-17 22:37:28.79061,2016-11-17 22:37:28.79061,crop,Infinity,-Infinity,"","","",plant trait -1000000092,"1 = irrigated, 0 = not",unitless,Binary Irrigated flag,2016-11-17 22:38:50.941492,2016-11-17 22:38:50.941492,irrigated,Infinity,-Infinity,"","","",model -1000000093,"0-not,1-it is",unitless,Binary flag for seasonal-deciduous leaf habit,2016-11-17 22:42:40.609728,2016-11-17 22:42:40.609728,cold_deciduous,Infinity,-Infinity,"","","",plant trait -1000000094,"0-not,1-it is",unitless,Binary flag for stress-deciduous leaf habit,2016-11-17 22:44:16.96609,2016-11-17 22:44:16.96609,stress_deciduous,Infinity,-Infinity,"","","",plant trait -1000000095,"1=woody, 0=not",unitless,Binary woody lifeform flag,2016-11-17 22:45:13.744987,2016-11-17 22:45:13.744987,woody,Infinity,-Infinity,"","","",plant trait -1000000096,"1=evergreen, 0 = not",unitless,Binary flag for evergreen leaf habit,2016-11-17 22:46:12.914464,2016-11-17 22:46:12.914464,evergreen,Infinity,-Infinity,"","","",plant trait -1000000128,DBH at which maximum height occurs,cm,"FATES: Change this to maximum height, more intuitive",2016-11-18 17:04:32.664879,2016-11-18 17:04:32.664879,DBH_at_HTMAX,Infinity,-Infinity,"","","",plant trait -1000000076,Minimum leaf water potential,MPa,"",2016-11-17 22:03:30.597573,2016-11-17 22:03:30.597573,leafp_min,Infinity,-Infinity,"","","",plant trait +5 = CAM",2016-11-17 22:35:05.181175,2016-11-17 22:35:05.181175,photosynthetic_pathway,,,"","","",plant trait +1000000091,"0 = not crop, 1 = crop",unitless,"Binary crop flag: 0. = not crop, 1. = crop",2016-11-17 22:37:28.79061,2016-11-17 22:37:28.79061,crop,,,"","","",plant trait +1000000092,"1 = irrigated, 0 = not",unitless,Binary Irrigated flag,2016-11-17 22:38:50.941492,2016-11-17 22:38:50.941492,irrigated,,,"","","",model +1000000093,"0-not,1-it is",unitless,Binary flag for seasonal-deciduous leaf habit,2016-11-17 22:42:40.609728,2016-11-17 22:42:40.609728,cold_deciduous,,,"","","",plant trait +1000000094,"0-not,1-it is",unitless,Binary flag for stress-deciduous leaf habit,2016-11-17 22:44:16.96609,2016-11-17 22:44:16.96609,stress_deciduous,,,"","","",plant trait +1000000095,"1=woody, 0=not",unitless,Binary woody lifeform flag,2016-11-17 22:45:13.744987,2016-11-17 22:45:13.744987,woody,,,"","","",plant trait +1000000096,"1=evergreen, 0 = not",unitless,Binary flag for evergreen leaf habit,2016-11-17 22:46:12.914464,2016-11-17 22:46:12.914464,evergreen,,,"","","",plant trait +1000000128,DBH at which maximum height occurs,cm,"FATES: Change this to maximum height, more intuitive",2016-11-18 17:04:32.664879,2016-11-18 17:04:32.664879,DBH_at_HTMAX,,,"","","",plant trait +1000000076,Minimum leaf water potential,MPa,"",2016-11-17 22:03:30.597573,2016-11-17 22:03:30.597573,leafp_min,,,"","","",plant trait 1000000077,carbon allocation added to seed_alloc for large trees,proportion,"A carbon allocation that is added on to seed_alloc for trees larger than dbh_max. [0-1] -FATES parameter",2016-11-17 22:05:26.150235,2016-11-17 22:05:26.150235,clone_alloc,Infinity,-Infinity,"","","",model -1000000130,"",mol mol-1,"",2016-11-23 21:52:38.076386,2016-11-23 21:52:38.076386,mole_fraction_of_ozone_in_air,Infinity,-Infinity,"","","","" -1000000131,"",mol mol-1,"",2016-11-23 21:54:27.996523,2016-11-23 21:54:27.996523,mole_fraction_of_carbon_dioxide_in_air,Infinity,-Infinity,"","","","" -1000000161,"",month/day/year,"",2017-03-03 20:21:56.736207,2017-03-03 20:21:56.736207,datetime_month/day/year,Infinity,-Infinity,"","","",model-ED2 -1000000112,maximum duration of fire,hours,"",2016-11-17 23:18:44.588475,2016-11-17 23:18:44.588475,max_fire_duration,Infinity,-Infinity,"","","",model -1000000003,root allocation fraction,1,proportion of NPP allocated to roots,2015-07-06 16:08:33.452449,2015-07-06 20:00:27.748721,root_allocation_fraction,Infinity,-Infinity,"","",Root Alloc Frac,model -1000000004,proportion of woody material becoming woody debris,year-1,"",2015-07-06 16:12:09.36953,2015-07-06 20:01:14.838452,wood_turnover_rate,Infinity,-Infinity,"","",Wood Turnover,model -1000000001,"",1,proportion of GPP lost to autotrophic respiration,2015-07-06 15:59:49.098847,2015-07-06 20:02:48.243371,autotrophic_respiration_fraction,Infinity,-Infinity,"","",Ra / GPP,model -1000000029,leaf weight per unit crown area,100g/m^2,"",2016-02-19 20:00:43.333624,2016-02-19 20:00:43.333624,FWT,Infinity,-Infinity,"","","","" -1000000030,Parameter to calculate crown area from diameter. SLTA and SLTB convert DBH to crown area (100 m2),"","",2016-02-19 20:01:03.782777,2016-02-19 20:01:03.782777,SLTA,Infinity,-Infinity,"","","","" -1000000031,Parameter to calculate crown area from diameter. SLTA and SLTB convert DBH to crown area (100 m2),"","",2016-02-19 20:01:16.739015,2016-02-19 20:01:16.739015,SLTB,Infinity,-Infinity,"","","","" -1000000344,Maximum N-C ratio of shoot,g N g-1 C,Maximum N-C ratio of shoot,2019-10-27 10:13:16.737655,2019-10-27 10:13:16.737655,n2c_shoot_max,Infinity,-Infinity,"","","","" -1000000349,"",mm,Leaf width on elongating (generative) tillers,2019-11-08 14:29:37.687395,2019-11-08 14:29:37.687395,generative_leaf_width,Infinity,-Infinity,"","","","" -1000000099,C:N for SOM pool 3,unitless,"",2016-11-17 22:56:32.535395,2016-11-17 22:56:32.535395,c2n_som3,Infinity,-Infinity,"","","",model -1000000100,CLM,unitless,Scale factor on CN decomposition for assigning methane flux,2016-11-17 22:58:21.729892,2016-11-17 22:58:21.729892,cnscalefactor,Infinity,-Infinity,"","","",model -1000000271,"","",fraction of GPP exuded to the soil via fine root exudation,2018-07-04 20:20:28.019757,2018-07-04 20:20:28.019757,fineRootExudation,Infinity,-Infinity,"","","","" -1000000101,CLM,unitless,e-folding depth for reduction in decomposition. Set to large number for depth-independance,2016-11-17 22:59:55.072351,2016-11-17 22:59:55.072351,decomp_depth_efolding,Infinity,-Infinity,"","","",model -1000000102,Fragmentation rate for CWD,unitless,"",2016-11-17 23:02:02.979342,2016-11-17 23:02:02.979342,CWD_fragmentation_rate,Infinity,-Infinity,"","","",model -1000000103,CLM,unitless,respiration fraction from CWD to litter 2,2016-11-17 23:03:21.107857,2016-11-17 23:03:21.107857,rf_cwdl2_bgc,Infinity,-Infinity,"","","",model -1000000104,CLM,unitless,respiration fraction from CWD to litter 3,2016-11-17 23:04:22.614297,2016-11-17 23:04:22.614297,rf_cwdl3_bgc,Infinity,-Infinity,"","","",model -1000000105,CLM,unitless,Respiration fraction for litter 1 -> SOM 1,2016-11-17 23:05:02.381761,2016-11-17 23:05:02.381761,rf_l1s1_bgc,Infinity,-Infinity,"","","",model -1000000106,CLM,unitless,respiration fraction litter 2 to SOM 1,2016-11-17 23:06:16.602083,2016-11-17 23:06:16.602083,rf_l2s1_bgc,Infinity,-Infinity,"","","",model -1000000107,CLM,unitless,respiration fraction from litter 3 to SOM 2,2016-11-17 23:06:50.095687,2016-11-17 23:06:50.095687,rf_l3s2_bgc,Infinity,-Infinity,"","","",model -1000000108,CLM,unitless,respiration fraction SOM 2 to SOM 1,2016-11-17 23:07:24.040675,2016-11-17 23:07:24.040675,rf_s2s1_bgc,Infinity,-Infinity,"","","",model -1000000109,CLM,unitless,Respiration fraction for SOM 2 -> SOM 3,2016-11-17 23:08:00.993773,2016-11-17 23:08:00.993773,rf_s2s3_bgc,Infinity,-Infinity,"","","",model -1000000110,CLM,unitless,respiration fraction SOM 3 to SOM 1,2016-11-17 23:08:34.587963,2016-11-17 23:08:34.587963,rf_s3s1_bgc,Infinity,-Infinity,"","","",model -1000000111,"",unitless,q10 for frozen soil respiration rates,2016-11-17 23:10:15.599942,2016-11-17 23:10:15.599942,Q10_frozen_soil,Infinity,-Infinity,"","","",ecosystem -1000000132,Above ground woody biomass,kg C m-2,PEcAn model output / MsTMIP standard. Other equivalent variables need to be converted to this one.,2016-11-25 22:54:00.238309,2016-11-25 22:54:00.238309,AbvGrndWood,Infinity,-Infinity,"","","",ecosystem -1000000134,ED,unitless,"Optimal soil porosity, as a fraction of total porosity, for heterotrophic respiration (dimensionless)",2016-12-22 17:32:51.844059,2016-12-22 17:32:51.844059,resp_opt_water,Infinity,-Infinity,"","","",model-ED2 -1000000138,"",1/day,Supply coefficient for nitrogen immobilization (1/day),2016-12-22 19:33:44.837314,2016-12-22 19:34:07.621364,N_immobil_supply_scale,Infinity,-Infinity,"","","",model-ED2 -1000000154,ED,"",Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 19:28:58.509022,2016-12-23 19:28:58.509022,rh_decay_dry,Infinity,-Infinity,"","","",model-ED2 -1000000155,ED,"",Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 19:29:36.802078,2016-12-23 19:29:36.802078,rh_decay_wet,Infinity,-Infinity,"","","",model-ED2 -1000000017,maximum diameter increment,cm,"",2016-02-19 19:24:19.515621,2017-03-23 19:38:42.188335,Gmax,Infinity,-Infinity,"","","","" -1000000164,"",proportion,SDGVM,2017-03-29 21:40:02.806707,2017-03-29 21:40:13.053829,mixing_parameter,Infinity,-Infinity,"","",Mixing parameter,model -1000000172,"",m3 m-3,The field capacity of soil is the maximum content of water it can retain against gravitational drainage.,2017-04-30 20:02:29.592602,2017-04-30 20:11:19.926408,volume_fraction_of_water_in_soil_at_field_capacity,Infinity,-Infinity,volume_fraction_of_condensed_water_in_soil_at_field_capacity,1,FieldCapacity,ecosystem -1000000176,"",J kg-1 K-1,soil_thermal_capacity = (Specific heat of dry soil) / soil_bulk_density,2017-04-30 21:29:17.960466,2017-04-30 21:29:17.960466,soil_thermal_capacity,Infinity,-Infinity,soil_thermal_capacity,J kg-1 K-1,"",ecosystem -1000000177,"",W m-1 K-1,Thermal conductivity is the constant k in the formula q = -k grad T where q is the heat transfer per unit time per unit area of a surface normal to the direction of transfer and grad T is the temperature gradient. Thermal conductivity is a property of the material.,2017-05-01 03:27:53.345173,2017-05-01 03:27:53.345173,soil_thermal_conductivity,Infinity,-Infinity,soil_thermal_conductivity,W m-1 K-1,"Kq,soil",ecosystem -1000000178,"",W m-1 K-1,"",2017-05-01 03:28:26.27913,2017-05-01 03:28:26.27913,soil_thermal_conductivity_at_saturation,Infinity,-Infinity,"","","Kq,soilSat",ecosystem +FATES parameter",2016-11-17 22:05:26.150235,2016-11-17 22:05:26.150235,clone_alloc,,,"","","",model +1000000130,"",mol mol-1,"",2016-11-23 21:52:38.076386,2016-11-23 21:52:38.076386,mole_fraction_of_ozone_in_air,,,"","","","" +1000000131,"",mol mol-1,"",2016-11-23 21:54:27.996523,2016-11-23 21:54:27.996523,mole_fraction_of_carbon_dioxide_in_air,,,"","","","" +1000000161,"",month/day/year,"",2017-03-03 20:21:56.736207,2017-03-03 20:21:56.736207,datetime_month/day/year,,,"","","",model-ED2 +1000000112,maximum duration of fire,hours,"",2016-11-17 23:18:44.588475,2016-11-17 23:18:44.588475,max_fire_duration,,,"","","",model +1000000003,root allocation fraction,1,proportion of NPP allocated to roots,2015-07-06 16:08:33.452449,2015-07-06 20:00:27.748721,root_allocation_fraction,,,"","",Root Alloc Frac,model +1000000004,proportion of woody material becoming woody debris,year-1,"",2015-07-06 16:12:09.36953,2015-07-06 20:01:14.838452,wood_turnover_rate,,,"","",Wood Turnover,model +1000000001,"",1,proportion of GPP lost to autotrophic respiration,2015-07-06 15:59:49.098847,2015-07-06 20:02:48.243371,autotrophic_respiration_fraction,,,"","",Ra / GPP,model +1000000029,leaf weight per unit crown area,100g/m^2,"",2016-02-19 20:00:43.333624,2016-02-19 20:00:43.333624,FWT,,,"","","","" +1000000030,Parameter to calculate crown area from diameter. SLTA and SLTB convert DBH to crown area (100 m2),"","",2016-02-19 20:01:03.782777,2016-02-19 20:01:03.782777,SLTA,,,"","","","" +1000000031,Parameter to calculate crown area from diameter. SLTA and SLTB convert DBH to crown area (100 m2),"","",2016-02-19 20:01:16.739015,2016-02-19 20:01:16.739015,SLTB,,,"","","","" +1000000344,Maximum N-C ratio of shoot,g N g-1 C,Maximum N-C ratio of shoot,2019-10-27 10:13:16.737655,2019-10-27 10:13:16.737655,n2c_shoot_max,,,"","","","" +1000000349,"",mm,Leaf width on elongating (generative) tillers,2019-11-08 14:29:37.687395,2019-11-08 14:29:37.687395,generative_leaf_width,,,"","","","" +1000000099,C:N for SOM pool 3,unitless,"",2016-11-17 22:56:32.535395,2016-11-17 22:56:32.535395,c2n_som3,,,"","","",model +1000000100,CLM,unitless,Scale factor on CN decomposition for assigning methane flux,2016-11-17 22:58:21.729892,2016-11-17 22:58:21.729892,cnscalefactor,,,"","","",model +1000000271,"","",fraction of GPP exuded to the soil via fine root exudation,2018-07-04 20:20:28.019757,2018-07-04 20:20:28.019757,fineRootExudation,,,"","","","" +1000000101,CLM,unitless,e-folding depth for reduction in decomposition. Set to large number for depth-independance,2016-11-17 22:59:55.072351,2016-11-17 22:59:55.072351,decomp_depth_efolding,,,"","","",model +1000000102,Fragmentation rate for CWD,unitless,"",2016-11-17 23:02:02.979342,2016-11-17 23:02:02.979342,CWD_fragmentation_rate,,,"","","",model +1000000103,CLM,unitless,respiration fraction from CWD to litter 2,2016-11-17 23:03:21.107857,2016-11-17 23:03:21.107857,rf_cwdl2_bgc,,,"","","",model +1000000104,CLM,unitless,respiration fraction from CWD to litter 3,2016-11-17 23:04:22.614297,2016-11-17 23:04:22.614297,rf_cwdl3_bgc,,,"","","",model +1000000105,CLM,unitless,Respiration fraction for litter 1 -> SOM 1,2016-11-17 23:05:02.381761,2016-11-17 23:05:02.381761,rf_l1s1_bgc,,,"","","",model +1000000106,CLM,unitless,respiration fraction litter 2 to SOM 1,2016-11-17 23:06:16.602083,2016-11-17 23:06:16.602083,rf_l2s1_bgc,,,"","","",model +1000000107,CLM,unitless,respiration fraction from litter 3 to SOM 2,2016-11-17 23:06:50.095687,2016-11-17 23:06:50.095687,rf_l3s2_bgc,,,"","","",model +1000000108,CLM,unitless,respiration fraction SOM 2 to SOM 1,2016-11-17 23:07:24.040675,2016-11-17 23:07:24.040675,rf_s2s1_bgc,,,"","","",model +1000000109,CLM,unitless,Respiration fraction for SOM 2 -> SOM 3,2016-11-17 23:08:00.993773,2016-11-17 23:08:00.993773,rf_s2s3_bgc,,,"","","",model +1000000110,CLM,unitless,respiration fraction SOM 3 to SOM 1,2016-11-17 23:08:34.587963,2016-11-17 23:08:34.587963,rf_s3s1_bgc,,,"","","",model +1000000111,"",unitless,q10 for frozen soil respiration rates,2016-11-17 23:10:15.599942,2016-11-17 23:10:15.599942,Q10_frozen_soil,,,"","","",ecosystem +1000000132,Above ground woody biomass,kg C m-2,PEcAn model output / MsTMIP standard. Other equivalent variables need to be converted to this one.,2016-11-25 22:54:00.238309,2016-11-25 22:54:00.238309,AbvGrndWood,,,"","","",ecosystem +1000000134,ED,unitless,"Optimal soil porosity, as a fraction of total porosity, for heterotrophic respiration (dimensionless)",2016-12-22 17:32:51.844059,2016-12-22 17:32:51.844059,resp_opt_water,,,"","","",model-ED2 +1000000138,"",1/day,Supply coefficient for nitrogen immobilization (1/day),2016-12-22 19:33:44.837314,2016-12-22 19:34:07.621364,N_immobil_supply_scale,,,"","","",model-ED2 +1000000154,ED,"",Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 19:28:58.509022,2016-12-23 19:28:58.509022,rh_decay_dry,,,"","","",model-ED2 +1000000155,ED,"",Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 19:29:36.802078,2016-12-23 19:29:36.802078,rh_decay_wet,,,"","","",model-ED2 +1000000017,maximum diameter increment,cm,"",2016-02-19 19:24:19.515621,2017-03-23 19:38:42.188335,Gmax,,,"","","","" +1000000164,"",proportion,SDGVM,2017-03-29 21:40:02.806707,2017-03-29 21:40:13.053829,mixing_parameter,,,"","",Mixing parameter,model +1000000172,"",m3 m-3,The field capacity of soil is the maximum content of water it can retain against gravitational drainage.,2017-04-30 20:02:29.592602,2017-04-30 20:11:19.926408,volume_fraction_of_water_in_soil_at_field_capacity,,,volume_fraction_of_condensed_water_in_soil_at_field_capacity,1,FieldCapacity,ecosystem +1000000176,"",J kg-1 K-1,soil_thermal_capacity = (Specific heat of dry soil) / soil_bulk_density,2017-04-30 21:29:17.960466,2017-04-30 21:29:17.960466,soil_thermal_capacity,,,soil_thermal_capacity,J kg-1 K-1,"",ecosystem +1000000177,"",W m-1 K-1,Thermal conductivity is the constant k in the formula q = -k grad T where q is the heat transfer per unit time per unit area of a surface normal to the direction of transfer and grad T is the temperature gradient. Thermal conductivity is a property of the material.,2017-05-01 03:27:53.345173,2017-05-01 03:27:53.345173,soil_thermal_conductivity,,,soil_thermal_conductivity,W m-1 K-1,"Kq,soil",ecosystem +1000000178,"",W m-1 K-1,"",2017-05-01 03:28:26.27913,2017-05-01 03:28:26.27913,soil_thermal_conductivity_at_saturation,,,"","","Kq,soilSat",ecosystem 1000000179,"",W m-1 K-1,"Thermal conductivity parameter -K = (thcond0 + thcond1*soil_water)/(thcond2 + thcond3*soil_water)",2017-05-01 03:30:14.822127,2017-05-01 03:30:14.822127,thcond0,Infinity,-Infinity,"","",thcond0,model +K = (thcond0 + thcond1*soil_water)/(thcond2 + thcond3*soil_water)",2017-05-01 03:30:14.822127,2017-05-01 03:30:14.822127,thcond0,,,"","",thcond0,model 1000000180,"",W m-1 K-1,"Thermal conductivity parameter -K = (thcond0 + thcond1*soil_water)/(thcond2 + thcond3*soil_water)",2017-05-01 03:30:43.446078,2017-05-01 03:30:43.446078,thcond1,Infinity,-Infinity,"","",thcond1,model +K = (thcond0 + thcond1*soil_water)/(thcond2 + thcond3*soil_water)",2017-05-01 03:30:43.446078,2017-05-01 03:30:43.446078,thcond1,,,"","",thcond1,model 1000000181,"",1,"Thermal conductivity parameter -K = (thcond0 + thcond1*soil_water)/(thcond2 + thcond3*soil_water)",2017-05-01 03:31:27.385788,2017-05-01 03:31:27.385788,thcond2,Infinity,-Infinity,"","",thcond2,model +K = (thcond0 + thcond1*soil_water)/(thcond2 + thcond3*soil_water)",2017-05-01 03:31:27.385788,2017-05-01 03:31:27.385788,thcond2,,,"","",thcond2,model 1000000182,"",1,"Thermal conductivity parameter -K = (thcond0 + thcond1*soil_water)/(thcond2 + thcond3*soil_water)",2017-05-01 03:31:58.419147,2017-05-01 03:31:58.419147,thcond3,Infinity,-Infinity,"","",thcond3,model -1000000218,Near surface specific humidity,kg kg-1,mstmip standard name ,2017-06-13 19:19:45.871405,2017-06-13 19:19:45.871405,Qair,Infinity,-Infinity,specific_humidity,"","","" -1000000220,Latent heat,W m-2,mstmip standard name ,2017-06-13 19:25:07.832327,2017-06-13 19:25:07.832327,Qle,Infinity,-Infinity,"","","","" -1000000221,Rainfall rate,kg m-2 s-1,mstmip standard name,2017-06-13 19:40:31.076534,2017-06-13 19:40:31.076534,Rainf,Infinity,-Infinity,rainfall_rate,kg m-2 s-1,"","" -1000000265,"",kg C m-2,pecan standard,2017-12-04 03:30:19.774649,2017-12-04 03:30:19.774649,litter_carbon_content,Infinity,-Infinity,"","","",model -1000000148,ED,unitless, Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture,2016-12-23 18:46:34.681918,2016-12-23 18:46:34.681918,rh_decay_low,Infinity,-Infinity,"","","",model-ED2 -1000000223,Average Layer Soil Temperature,K,mstmip standard name,2017-06-13 19:47:11.095633,2017-06-13 19:48:03.55737,SoilTemp,Infinity,-Infinity,soil_temperature,K,"","" -1000000224,Near surface air temperature,K,mstmip standard name,2017-06-13 19:50:53.18309,2017-06-13 19:50:53.18309,Tair,Infinity,-Infinity,air_tempurature,K,"","" -1000000183,soil pH,"","",2017-05-01 15:38:52.008786,2017-05-01 15:38:52.008786,soil_ph,Infinity,-Infinity,"","","",ecosystem -1000000225,Canopy Temperature,K,mstmip standard names,2017-06-13 20:11:31.564362,2017-06-13 20:11:31.564362,Tcan,Infinity,-Infinity,canopy_temperature,K,"","" -1000000233,"","","",2017-09-29 19:03:24.964957,2017-09-29 19:03:24.964957,baseSoilRespCold,Infinity,-Infinity,"","","","" -1000000234,"","","",2017-09-29 19:03:39.40365,2017-09-29 19:03:39.40365,soilRespQ10Cold,Infinity,-Infinity,"","","","" -1000000270,"","",fraction of GPP exuded to the soil via coarse root exudation,2018-07-04 20:16:02.519539,2018-07-04 20:16:02.519539,coarseRootExudation,Infinity,-Infinity,"","","",model -1000000011,vapor pressure effect on gpp,kPA,The effect of Vapor Pressure Deficit (VPD) on GPP calibrated for PRELES model.,2015-11-25 21:06:50.545342,2015-11-25 21:06:50.545342,kGPP,Infinity,-Infinity,vapor_pressure_effect_on_gpp,kPA,"",model -1000000129,Seed rain input from outside the patch,kg m-2 y-1,"FATES. Differs from ED2's seed_rain, which is seeds/m2/yr",2016-11-18 18:45:42.026988,2016-11-18 18:45:42.026988,seed_rain_kgC,Infinity,-Infinity,"","","",model -1000000133,ED,unitless,Fraction of structural material that goes to coarse woody debris upon mortality.,2016-12-22 17:13:15.471416,2016-12-22 17:25:41.220808,cwd_frac,Infinity,-Infinity,"","","",model-ED2 -1000000135,ED,unitless,Determines rate at which heterotrophic respiration declines for relative porosities below resp_opt_water (dimensionless).,2016-12-22 17:36:06.054776,2016-12-22 17:36:06.054776,resp_water_below_opt,Infinity,-Infinity,"","","",model-ED2 -1000000136,ED,unitless,Determines rate at which heterotrophic respiration declines for relative porosities above resp_opt_water (dimensionless).,2016-12-22 17:36:57.081326,2016-12-22 17:39:08.305689,resp_water_above_opt,Infinity,-Infinity,"","","",model-ED2 -1000000137,ED,1/K,it determines how rapidly heterotrophic respiration increases with increasing temperature (1/K).,2016-12-22 18:50:48.410454,2016-12-22 19:35:04.116287,resp_temperature_increase,Infinity,-Infinity,"","","",model-ED2 -1000000250,"","","",2017-10-01 14:20:53.61883,2017-10-01 14:20:53.61883,cFracLeaf,Infinity,-Infinity,"","","","" -1000000166,"",m/s,"Hydraulic conductivity is the constant k in Darcy's Law q=-k grad h for fluid flow q (volume transport per unit area i.e. velocity) through a porous medium, where h is the hydraulic head (pressure expressed as an equivalent depth of water).",2017-04-30 19:01:54.418221,2017-04-30 19:01:54.418221,soil_hydraulic_conductivity_at_saturation,Infinity,-Infinity,soil_hydraulic_conductivity_at_saturation,m/s,Ksat,ecosystem -1000000165,albedo of the soil surface assuming no snow,proportion,"",2017-04-28 10:03:25.009119,2017-04-28 10:03:25.009119,soil_albedo,Infinity,-Infinity,soil_albedo,1,"",ecosystem -1000000170,"",m,"",2017-04-30 19:12:31.670028,2017-04-30 19:12:31.670028,soil_water_potential_at_saturation,Infinity,-Infinity,"","",PSIsat,ecosystem -1000000174,Wilting point capacity (at -1.5MPa),m3 m-3,The wilting point of soil is the water content below which plants cannot extract sufficient water to balance their loss through transpiration. ,2017-04-30 20:25:27.856626,2017-05-01 03:11:14.828446,volume_fraction_of_condensed_water_in_soil_at_wilting_point,Infinity,-Infinity,volume_fraction_of_condensed_water_in_soil_at_wilting_point,1,SoilWiltPoint,ecosystem -1000000173,Dry soil capacity (at -3.1MPa),m3 m-3,Dry soil capacity (at -3.1MPa) [ m^3/m^3 ],2017-04-30 20:21:48.87521,2017-05-01 03:11:40.95948,volume_fraction_of_condensed_water_in_dry_soil,Infinity,-Infinity,"",1,DrySoil,ecosystem -1000000185,Soil depth,m,"This variable refers to the depth of the soil itself, not the depth some other measurement was made, and thus is distinct from the existing variable 'depth' which is frequently used as a covariate.",2017-05-01 15:50:57.640822,2017-05-01 15:52:19.175378,soil_depth,Infinity,-Infinity,"","","",ecosystem -1000000186,Soil CEC,meq/100g,Cation exchange capacity represents the total nutrient fixing capacity of a soil. Soils with low CEC have little resilience and cannot build up stores of nutrients. CEC values are represented as milliequivalents of hydrogen per 100 g of dry soil. ,2017-05-01 15:56:16.847626,2017-05-01 15:56:16.847626,soil_cec,Infinity,-Infinity,"","",CEC,ecosystem -1000000219,Sensible heat,W m-2,mstmip standard name,2017-06-13 19:21:44.491592,2017-06-13 19:21:44.491592,Qh,Infinity,-Infinity,"","","","" -1000000049,"",kg C m-2 s-1,"",2016-08-09 00:37:26.877937,2017-06-23 20:49:48.462532,RootLitter,Infinity,-Infinity,"","","","" -1000000235,"","","",2017-09-29 20:20:06.518253,2017-09-29 20:20:06.518253,coldSoilThreshold,Infinity,-Infinity,"","","","" -1000000167,Clay content,1,"CF standard is volume fraction, but all data appears to be %weight so we're using weight (SI equivalent to mass fraction)",2017-04-30 19:03:48.776519,2017-10-24 20:57:26.965865,fraction_of_clay_in_soil,Infinity,-Infinity,fraction_of_clay_in_soil,1,clay,ecosystem -1000000168,Sand content,1,"CF standard is volume fraction, but all data appears to be %weight so we're using weight (SI equivalent to mass fraction)",2017-04-30 19:04:21.934654,2017-10-24 20:58:53.965905,fraction_of_sand_in_soil,Infinity,-Infinity,fraction_of_sand_in_soil,1,sand,ecosystem -1000000169,Silt content,1,"CF standard is volume fraction, but all data appears to be %weight so we're using weight (SI equivalent to mass fraction)",2017-04-30 19:05:28.403343,2017-10-24 20:59:08.185415,fraction_of_silt_in_soil,Infinity,-Infinity,fraction_of_silt_in_soil,1,silt,ecosystem -1000000236,"","","",2017-09-29 20:20:41.714536,2017-09-29 20:20:41.714536,soilRespMoistEffect,Infinity,-Infinity,"","","","" -1000000184,"",1,"CF standard is volume fraction, but all data appears to be %weight so we're using weight (SI equivalent to mass fraction)",2017-05-01 15:40:42.15919,2017-10-24 20:59:20.334414,fraction_of_gravel_in_soil,Infinity,-Infinity,"","",gravel,ecosystem -1000000263,Gross Woody Biomass Increment,kg m-2 s-1,This is functionally equivalent to the bety variable ANPP_woody_C (id: 447),2017-11-21 21:34:22.47663,2017-11-21 21:34:22.47663,GWBI,Infinity,-Infinity,net_primary_productivity_of_biomass_expressed_as_carbon_accumulated_in_wood,kg m-2 s-1,"",model -1000000264,"",kg C m-2 s-1,Standard pecan variable. ,2017-11-21 21:36:56.369996,2017-11-21 21:36:56.369996,fine_root_litter_carbon_flux,Infinity,-Infinity,"","","",model -1000000252,Fractional composition of beech from pollen derived fractional composition data product,"","",2017-11-08 21:51:18.90536,2017-11-08 21:52:39.37533,beech,Infinity,-Infinity,"","","",ecosystem -1000000139,ED,unitless,Fraction of structural pool decomposition going to heterotrophic respiration instead of the fast pool. ,2016-12-22 19:52:53.860931,2016-12-22 20:45:25.888501,r_fsc,Infinity,-Infinity,"","","",model-ED2 -1000000140,ED,unitless,Fraction of structural pool decomposition going to heterotrophic respiration.,2016-12-22 19:53:42.805863,2016-12-22 20:46:22.820263,r_stsc,Infinity,-Infinity,"","","",model-ED2 -1000000141,ED,unitless,Fraction of structural pool decomposition going to heterotrophic respiration instead of the slow pool. ,2016-12-22 20:47:03.642425,2016-12-22 20:47:03.642425,r_ssc,Infinity,-Infinity,"","","",model-ED2 -1000000253,Fraction composition data product,"","",2017-11-08 21:53:39.310802,2017-11-08 21:53:39.310802,birch,Infinity,-Infinity,"","","","" -1000000254,Fraction composition data product,"","",2017-11-08 21:53:51.441159,2017-11-08 21:53:51.441159,chestnut,Infinity,-Infinity,"","","","" -1000000255,Fraction composition data product,"","",2017-11-08 21:54:01.23198,2017-11-08 21:54:01.23198,hemlock,Infinity,-Infinity,"","","","" -1000000256,Fraction composition data product,"","",2017-11-08 21:54:10.239258,2017-11-08 21:54:10.239258,hickory,Infinity,-Infinity,"","","","" -1000000078,storage:leaf ratio,proportion,The target fraction of storage carbon over leaf carbon FATES parameter,2016-11-17 22:07:37.632377,2016-11-17 22:07:37.632377,storage_target_ratio,Infinity,-Infinity,"","","",model -1000000080,"",yr-1,The mortality rate imposed on plants meeting hydraulic stress failure condition,2016-11-17 22:10:46.665704,2016-11-17 22:10:46.665704,hydraulic_stress_mortality,Infinity,-Infinity,"","","",model -1000000081,"",unitless,Competetive exclusion parameter for weighting demotions from the upper canopy classification in PPA,2016-11-17 22:12:14.731098,2016-11-17 22:12:14.731098,PPA_comp_exclusion,Infinity,-Infinity,"","","",model -1000000257,Fraction composition data product,"","",2017-11-08 21:54:19.854512,2017-11-08 21:54:19.854512,maple,Infinity,-Infinity,"","","","" -1000000258,Fraction composition data product,"","",2017-11-08 21:54:29.18576,2017-11-08 21:54:29.18576,oak,Infinity,-Infinity,"","","","" -1000000113,"",m-2 y-1,"The number of fires initiated per m2 per year, from lightning and humans",2016-11-17 23:36:07.173709,2016-11-17 23:36:07.173709,nfires,Infinity,-Infinity,"","","",ecosystem -1000000079,Crown depth fraction,proportion,Crown depth fraction of a plant relative to its total height,2016-11-17 22:08:42.398226,2016-11-17 22:08:42.398226,crown_depth_fraction,Infinity,-Infinity,"","","",plant trait -1000000114,particle density of fuel,kg m-3,SPITFIRE,2016-11-17 23:38:52.745894,2016-11-17 23:38:52.745894,fuel_particle_density,Infinity,-Infinity,"","","",ecosystem -1000000115,"",unitless,SPITFIRE: change in fire duration with fire danger index. from Canadian Forest Service,2016-11-17 23:39:50.609301,2016-11-17 23:39:50.609301,durat_slope,Infinity,-Infinity,"","","",model -1000000116,SPITFIRE mineral dampening coefficient,unitless,"",2016-11-17 23:40:48.303676,2016-11-17 23:40:48.303676,miner_damp,Infinity,-Infinity,"","","",model +K = (thcond0 + thcond1*soil_water)/(thcond2 + thcond3*soil_water)",2017-05-01 03:31:58.419147,2017-05-01 03:31:58.419147,thcond3,,,"","",thcond3,model +1000000218,Near surface specific humidity,kg kg-1,mstmip standard name ,2017-06-13 19:19:45.871405,2017-06-13 19:19:45.871405,Qair,,,specific_humidity,"","","" +1000000220,Latent heat,W m-2,mstmip standard name ,2017-06-13 19:25:07.832327,2017-06-13 19:25:07.832327,Qle,,,"","","","" +1000000221,Rainfall rate,kg m-2 s-1,mstmip standard name,2017-06-13 19:40:31.076534,2017-06-13 19:40:31.076534,Rainf,,,rainfall_rate,kg m-2 s-1,"","" +1000000265,"",kg C m-2,pecan standard,2017-12-04 03:30:19.774649,2017-12-04 03:30:19.774649,litter_carbon_content,,,"","","",model +1000000148,ED,unitless, Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture,2016-12-23 18:46:34.681918,2016-12-23 18:46:34.681918,rh_decay_low,,,"","","",model-ED2 +1000000223,Average Layer Soil Temperature,K,mstmip standard name,2017-06-13 19:47:11.095633,2017-06-13 19:48:03.55737,SoilTemp,,,soil_temperature,K,"","" +1000000224,Near surface air temperature,K,mstmip standard name,2017-06-13 19:50:53.18309,2017-06-13 19:50:53.18309,Tair,,,air_tempurature,K,"","" +1000000183,soil pH,"","",2017-05-01 15:38:52.008786,2017-05-01 15:38:52.008786,soil_ph,,,"","","",ecosystem +1000000225,Canopy Temperature,K,mstmip standard names,2017-06-13 20:11:31.564362,2017-06-13 20:11:31.564362,Tcan,,,canopy_temperature,K,"","" +1000000233,"","","",2017-09-29 19:03:24.964957,2017-09-29 19:03:24.964957,baseSoilRespCold,,,"","","","" +1000000234,"","","",2017-09-29 19:03:39.40365,2017-09-29 19:03:39.40365,soilRespQ10Cold,,,"","","","" +1000000270,"","",fraction of GPP exuded to the soil via coarse root exudation,2018-07-04 20:16:02.519539,2018-07-04 20:16:02.519539,coarseRootExudation,,,"","","",model +1000000011,vapor pressure effect on gpp,kPA,The effect of Vapor Pressure Deficit (VPD) on GPP calibrated for PRELES model.,2015-11-25 21:06:50.545342,2015-11-25 21:06:50.545342,kGPP,,,vapor_pressure_effect_on_gpp,kPA,"",model +1000000129,Seed rain input from outside the patch,kg m-2 y-1,"FATES. Differs from ED2's seed_rain, which is seeds/m2/yr",2016-11-18 18:45:42.026988,2016-11-18 18:45:42.026988,seed_rain_kgC,,,"","","",model +1000000133,ED,unitless,Fraction of structural material that goes to coarse woody debris upon mortality.,2016-12-22 17:13:15.471416,2016-12-22 17:25:41.220808,cwd_frac,,,"","","",model-ED2 +1000000135,ED,unitless,Determines rate at which heterotrophic respiration declines for relative porosities below resp_opt_water (dimensionless).,2016-12-22 17:36:06.054776,2016-12-22 17:36:06.054776,resp_water_below_opt,,,"","","",model-ED2 +1000000136,ED,unitless,Determines rate at which heterotrophic respiration declines for relative porosities above resp_opt_water (dimensionless).,2016-12-22 17:36:57.081326,2016-12-22 17:39:08.305689,resp_water_above_opt,,,"","","",model-ED2 +1000000137,ED,1/K,it determines how rapidly heterotrophic respiration increases with increasing temperature (1/K).,2016-12-22 18:50:48.410454,2016-12-22 19:35:04.116287,resp_temperature_increase,,,"","","",model-ED2 +1000000250,"","","",2017-10-01 14:20:53.61883,2017-10-01 14:20:53.61883,cFracLeaf,,,"","","","" +1000000166,"",m/s,"Hydraulic conductivity is the constant k in Darcy's Law q=-k grad h for fluid flow q (volume transport per unit area i.e. velocity) through a porous medium, where h is the hydraulic head (pressure expressed as an equivalent depth of water).",2017-04-30 19:01:54.418221,2017-04-30 19:01:54.418221,soil_hydraulic_conductivity_at_saturation,,,soil_hydraulic_conductivity_at_saturation,m/s,Ksat,ecosystem +1000000165,albedo of the soil surface assuming no snow,proportion,"",2017-04-28 10:03:25.009119,2017-04-28 10:03:25.009119,soil_albedo,,,soil_albedo,1,"",ecosystem +1000000170,"",m,"",2017-04-30 19:12:31.670028,2017-04-30 19:12:31.670028,soil_water_potential_at_saturation,,,"","",PSIsat,ecosystem +1000000174,Wilting point capacity (at -1.5MPa),m3 m-3,The wilting point of soil is the water content below which plants cannot extract sufficient water to balance their loss through transpiration. ,2017-04-30 20:25:27.856626,2017-05-01 03:11:14.828446,volume_fraction_of_condensed_water_in_soil_at_wilting_point,,,volume_fraction_of_condensed_water_in_soil_at_wilting_point,1,SoilWiltPoint,ecosystem +1000000173,Dry soil capacity (at -3.1MPa),m3 m-3,Dry soil capacity (at -3.1MPa) [ m^3/m^3 ],2017-04-30 20:21:48.87521,2017-05-01 03:11:40.95948,volume_fraction_of_condensed_water_in_dry_soil,,,"",1,DrySoil,ecosystem +1000000185,Soil depth,m,"This variable refers to the depth of the soil itself, not the depth some other measurement was made, and thus is distinct from the existing variable 'depth' which is frequently used as a covariate.",2017-05-01 15:50:57.640822,2017-05-01 15:52:19.175378,soil_depth,,,"","","",ecosystem +1000000186,Soil CEC,meq/100g,Cation exchange capacity represents the total nutrient fixing capacity of a soil. Soils with low CEC have little resilience and cannot build up stores of nutrients. CEC values are represented as milliequivalents of hydrogen per 100 g of dry soil. ,2017-05-01 15:56:16.847626,2017-05-01 15:56:16.847626,soil_cec,,,"","",CEC,ecosystem +1000000219,Sensible heat,W m-2,mstmip standard name,2017-06-13 19:21:44.491592,2017-06-13 19:21:44.491592,Qh,,,"","","","" +1000000049,"",kg C m-2 s-1,"",2016-08-09 00:37:26.877937,2017-06-23 20:49:48.462532,RootLitter,,,"","","","" +1000000235,"","","",2017-09-29 20:20:06.518253,2017-09-29 20:20:06.518253,coldSoilThreshold,,,"","","","" +1000000167,Clay content,1,"CF standard is volume fraction, but all data appears to be %weight so we're using weight (SI equivalent to mass fraction)",2017-04-30 19:03:48.776519,2017-10-24 20:57:26.965865,fraction_of_clay_in_soil,,,fraction_of_clay_in_soil,1,clay,ecosystem +1000000168,Sand content,1,"CF standard is volume fraction, but all data appears to be %weight so we're using weight (SI equivalent to mass fraction)",2017-04-30 19:04:21.934654,2017-10-24 20:58:53.965905,fraction_of_sand_in_soil,,,fraction_of_sand_in_soil,1,sand,ecosystem +1000000169,Silt content,1,"CF standard is volume fraction, but all data appears to be %weight so we're using weight (SI equivalent to mass fraction)",2017-04-30 19:05:28.403343,2017-10-24 20:59:08.185415,fraction_of_silt_in_soil,,,fraction_of_silt_in_soil,1,silt,ecosystem +1000000236,"","","",2017-09-29 20:20:41.714536,2017-09-29 20:20:41.714536,soilRespMoistEffect,,,"","","","" +1000000184,"",1,"CF standard is volume fraction, but all data appears to be %weight so we're using weight (SI equivalent to mass fraction)",2017-05-01 15:40:42.15919,2017-10-24 20:59:20.334414,fraction_of_gravel_in_soil,,,"","",gravel,ecosystem +1000000263,Gross Woody Biomass Increment,kg m-2 s-1,This is functionally equivalent to the bety variable ANPP_woody_C (id: 447),2017-11-21 21:34:22.47663,2017-11-21 21:34:22.47663,GWBI,,,net_primary_productivity_of_biomass_expressed_as_carbon_accumulated_in_wood,kg m-2 s-1,"",model +1000000264,"",kg C m-2 s-1,Standard pecan variable. ,2017-11-21 21:36:56.369996,2017-11-21 21:36:56.369996,fine_root_litter_carbon_flux,,,"","","",model +1000000252,Fractional composition of beech from pollen derived fractional composition data product,"","",2017-11-08 21:51:18.90536,2017-11-08 21:52:39.37533,beech,,,"","","",ecosystem +1000000139,ED,unitless,Fraction of structural pool decomposition going to heterotrophic respiration instead of the fast pool. ,2016-12-22 19:52:53.860931,2016-12-22 20:45:25.888501,r_fsc,,,"","","",model-ED2 +1000000140,ED,unitless,Fraction of structural pool decomposition going to heterotrophic respiration.,2016-12-22 19:53:42.805863,2016-12-22 20:46:22.820263,r_stsc,,,"","","",model-ED2 +1000000141,ED,unitless,Fraction of structural pool decomposition going to heterotrophic respiration instead of the slow pool. ,2016-12-22 20:47:03.642425,2016-12-22 20:47:03.642425,r_ssc,,,"","","",model-ED2 +1000000253,Fraction composition data product,"","",2017-11-08 21:53:39.310802,2017-11-08 21:53:39.310802,birch,,,"","","","" +1000000254,Fraction composition data product,"","",2017-11-08 21:53:51.441159,2017-11-08 21:53:51.441159,chestnut,,,"","","","" +1000000255,Fraction composition data product,"","",2017-11-08 21:54:01.23198,2017-11-08 21:54:01.23198,hemlock,,,"","","","" +1000000256,Fraction composition data product,"","",2017-11-08 21:54:10.239258,2017-11-08 21:54:10.239258,hickory,,,"","","","" +1000000078,storage:leaf ratio,proportion,The target fraction of storage carbon over leaf carbon FATES parameter,2016-11-17 22:07:37.632377,2016-11-17 22:07:37.632377,storage_target_ratio,,,"","","",model +1000000080,"",yr-1,The mortality rate imposed on plants meeting hydraulic stress failure condition,2016-11-17 22:10:46.665704,2016-11-17 22:10:46.665704,hydraulic_stress_mortality,,,"","","",model +1000000081,"",unitless,Competetive exclusion parameter for weighting demotions from the upper canopy classification in PPA,2016-11-17 22:12:14.731098,2016-11-17 22:12:14.731098,PPA_comp_exclusion,,,"","","",model +1000000257,Fraction composition data product,"","",2017-11-08 21:54:19.854512,2017-11-08 21:54:19.854512,maple,,,"","","","" +1000000258,Fraction composition data product,"","",2017-11-08 21:54:29.18576,2017-11-08 21:54:29.18576,oak,,,"","","","" +1000000113,"",m-2 y-1,"The number of fires initiated per m2 per year, from lightning and humans",2016-11-17 23:36:07.173709,2016-11-17 23:36:07.173709,nfires,,,"","","",ecosystem +1000000079,Crown depth fraction,proportion,Crown depth fraction of a plant relative to its total height,2016-11-17 22:08:42.398226,2016-11-17 22:08:42.398226,crown_depth_fraction,,,"","","",plant trait +1000000114,particle density of fuel,kg m-3,SPITFIRE,2016-11-17 23:38:52.745894,2016-11-17 23:38:52.745894,fuel_particle_density,,,"","","",ecosystem +1000000115,"",unitless,SPITFIRE: change in fire duration with fire danger index. from Canadian Forest Service,2016-11-17 23:39:50.609301,2016-11-17 23:39:50.609301,durat_slope,,,"","","",model +1000000116,SPITFIRE mineral dampening coefficient,unitless,"",2016-11-17 23:40:48.303676,2016-11-17 23:40:48.303676,miner_damp,,,"","","",model 1000000117,mineral content of fuel,proportion,"SPITFIRE -MCD: this shouldn't be independent of [l,r,s]_minerals",2016-11-17 23:42:56.540469,2016-11-17 23:42:56.540469,fuel_minerals,Infinity,-Infinity,"","","",model -1000000118,alpha_SH,unitless,SPITFIRE scorch height parameter,2016-11-17 23:44:08.489772,2016-11-17 23:44:08.489772,alpha_scorch_height,Infinity,-Infinity,"","","",model -1000000119,"",unitless,SPITFIRE Constant in calculation of dewpoint for Fire Danger Index (FDI),2016-11-17 23:46:29.700678,2016-11-17 23:46:29.700678,fdi_a,Infinity,-Infinity,"","","",model -1000000120,"",unitless,SPITFIRE Constant in calculation of dewpoint for Fire Danger Index (FDI),2016-11-17 23:47:16.050825,2016-11-17 23:47:16.050825,fdi_b,Infinity,-Infinity,"","","",model -1000000121,PPA,cm/m2,"Maximum allowable ""dynamic ratio of dbh to canopy area"" for cohorts in closed canopies.",2016-11-17 23:49:00.748176,2016-11-17 23:49:00.748176,canopy_max_spread,Infinity,-Infinity,"","","",model -1000000269,"","","",2018-03-23 21:46:23.516211,2018-03-23 21:46:23.516211,AGB.pft,Infinity,-Infinity,"","","",model -1000000122,PPA,cm/m2,"Minimum allowable ""dynamic ratio of dbh to canopy area"" for cohorts in closed canopies.",2016-11-17 23:49:44.599749,2016-11-17 23:49:44.599749,canopy_min_spread,Infinity,-Infinity,"","","",model -1000000123,SPITFIRE,proportion,Fraction of coarse woody debris (CWD) that is moved into each of the four woody fuel classes,2016-11-17 23:56:59.600916,2016-11-17 23:56:59.600916,CWD_frac1,Infinity,-Infinity,"","","",model -1000000124,SPITFIRE,proportion,Fraction of coarse woody debris (CWD) that is moved into each of the four woody fuel classes,2016-11-17 23:57:27.748774,2016-11-17 23:57:27.748774,CWD_frac2,Infinity,-Infinity,"","","",model -1000000125,SPITFIRE,proportion,Fraction of coarse woody debris (CWD) that is moved into each of the four woody fuel classes,2016-11-17 23:57:51.620936,2016-11-17 23:57:51.620936,CWD_frac3,Infinity,-Infinity,"","","",model -1000000126,SPITFIRE,proportion,Fraction of coarse woody debris (CWD) that is moved into each of the four woody fuel classes,2016-11-17 23:58:11.982795,2016-11-17 23:58:11.982795,CWD_frac4,Infinity,-Infinity,"","","",model -1000000127,SPITFIRE,unitless,SPITFIRE: Mortality from fire scorching susceptibility parameter,2016-11-18 00:10:50.936942,2016-11-18 00:10:50.936942,crown_kill,Infinity,-Infinity,"","","",model -1000000251,"",second,Second as integer,2017-11-08 02:44:04.672843,2017-11-08 02:44:04.672843,second,Infinity,-Infinity,"","","","" -1000000259,Fraction composition data product,"","",2017-11-08 21:54:38.976233,2017-11-08 21:54:38.976233,pine,Infinity,-Infinity,"","","","" -1000000260,Fraction composition data product,"","",2017-11-08 21:54:48.790533,2017-11-08 21:54:48.790533,spruce,Infinity,-Infinity,"","","","" -1000000212,"","","",2017-06-10 16:59:01.31451,2017-06-10 16:59:01.31451,model_type,Infinity,-Infinity,"","","","" -1000000261,Fraction composition data product,"","",2017-11-08 21:54:58.583212,2017-11-08 21:54:58.583212,other,Infinity,-Infinity,"","","","" -1000000211,"","",Made by Ann Raiho to try to run paleon data products through load_data,2017-06-10 16:56:20.900653,2017-06-12 17:11:21.365764,MCMC_iteration,Infinity,-Infinity,"","","","" -1000000214,Near surface CO2 concentration,micromol mol-1,mstmip standard name,2017-06-13 18:58:09.698186,2017-06-13 18:58:09.698186,CO2air,Infinity,-Infinity,atmosphere_moles_of_carbon_dioxide,mol,"","" -1000000215,Surface incident longwave radiation,W/m2,mstmip standard name ,2017-06-13 19:01:46.912872,2017-06-13 19:01:46.912872,Lwdown,Infinity,-Infinity,surface_downwelling_longwave_flux_in_air,W/m2,"","" -1000000216,Net Primary Production,kg C m-2 s-1,mstmip standard name,2017-06-13 19:04:22.723565,2017-06-13 19:04:22.723565,NPP,Infinity,-Infinity,net_primary_productivity_of_biomass_expressed_as_carbon,kg m-2 s-1,"","" -1000000217,Surface pressure,Pa,mstmip standard name,2017-06-13 19:08:02.724066,2017-06-13 19:08:02.724066,Psurf,Infinity,-Infinity,air_pressure,Pa,"","" -1000000046,"",kg C m-2 s-1,PEcAn output variable (see model2netcdf.DALEC.R),2016-08-09 00:29:53.657138,2017-12-04 04:00:09.926303,LeafLitter,Infinity,-Infinity,"","","","" -1000000050,"","","proposed standard USDA acronym for name of plant, based on United States Department of Agriculture standards. ",2016-09-14 20:32:12.806947,2017-08-30 16:49:26.830833,species_USDA_symbol,Infinity,-Infinity,"","","","" -1000000229,"","","proposed standard FIA acronym for name of plant, based on the Forest Inventory and Analysis national program standard. ",2017-08-30 16:50:35.952885,2017-08-30 16:50:35.952885,species_FIA_symbol,Infinity,-Infinity,"","","","" -1000000266,"",kg C m-2 s-1,pecan standard,2017-12-04 04:00:38.913639,2017-12-04 04:00:38.913639,leaf_litter_carbon_flux,Infinity,-Infinity,"","","","" -1000000230,ratio of fine root to leaf biomass also 'fine root allocation',ratio,same as 'fineroot2leaf',2017-09-07 14:04:44.22434,2017-09-07 14:04:44.22434,q,Infinity,-Infinity,"","","",plant trait -1000000222,Average Layer Fraction of Saturation,"",mstmip standard names,2017-06-13 19:44:19.081647,2017-11-20 20:39:23.943684,SoilMoistFrac,Infinity,-Infinity,mass_fraction_of_unfrozen_water_in_soil_moisture,"","","" -1000000272,"",""," amount that foliar resp. is shutdown if soil is frozen (0 = full shutdown, 1 = no shutdown)",2018-07-04 21:23:14.905701,2018-07-04 21:23:14.905701,frozenSoilFolREff,Infinity,-Infinity,"","","",model-Sipnet -1000000283,"","",Maximum nitrogen uptake per fine root ,2018-11-03 15:08:00.794891,2018-11-03 15:08:00.794891,nup2root_max,Infinity,-Infinity,"","","","" -1000000273,sapwood turnover rate,year-1,initially created for LPJ-GUESS,2018-10-24 14:48:25.480328,2018-10-24 14:48:25.480328,sapwood_turnover_rate,Infinity,-Infinity,"","","","" -1000000231,rate of fine root respiration at reference soil temperature,umol CO_2 kg-1 s-1,same as 'root_respiration_rate',2017-09-07 14:17:17.613038,2017-09-07 14:17:17.613038,root_respiration_factor,Infinity,-Infinity,"","","","" -1000000274,Threshold for growth suppression mortality,kgC m-2 leaf yr-1,LPJ-GUESS parameter,2018-10-24 14:59:55.46545,2018-10-24 14:59:55.46545,greff_min,Infinity,-Infinity,"","","","" -1000000226,"",kg C m-2,"",2017-08-29 18:30:31.045266,2017-08-29 18:30:31.045266,root_carbon_content,Infinity,-Infinity,"","","","" -1000000227,"",kg C m-2,"",2017-08-29 18:31:06.07708,2017-08-29 18:31:06.07708,leaf_carbon_content,Infinity,-Infinity,"","","","" -1000000228,"",kg C m-2,"",2017-08-29 18:31:37.333514,2017-08-29 18:31:37.333514,wood_carbon_content,Infinity,-Infinity,"","","","" -1000000275,"",DOY,"",2018-10-25 14:58:21.98489,2018-10-25 14:58:21.98489,date_of_budburst,Infinity,-Infinity,"","","","" -1000000276,"",DOY,"",2018-10-25 14:59:16.847738,2018-10-25 14:59:16.847738,date_of_senescence,Infinity,-Infinity,"","","","" -1000000292,"",m2 kg-1,Specific Root Area,2019-02-05 20:34:26.283584,2019-02-05 20:34:26.283584,SRA,Infinity,-Infinity,"","","","" -1000000293,"",Ratio,Ratio of actual vessel length (water conducting length) to tree height,2019-02-05 20:36:26.106783,2019-02-05 20:36:26.106783,vessel_curl_factor,Infinity,-Infinity,"","","",model-ED2 -1000000316,"",degrees Celcius day,Phyllochron,2019-09-29 11:56:59.638181,2019-09-29 11:56:59.638181,phyllochron,Infinity,-Infinity,"","","","" -1000000294,Leaf bulk elastic modulus,MPa,ED Hydro (epsil_node in FATES),2019-02-15 03:16:41.989104,2019-02-15 03:26:21.035394,leaf_elastic_mod,Infinity,-Infinity,"","","",plant trait +MCD: this shouldn't be independent of [l,r,s]_minerals",2016-11-17 23:42:56.540469,2016-11-17 23:42:56.540469,fuel_minerals,,,"","","",model +1000000118,alpha_SH,unitless,SPITFIRE scorch height parameter,2016-11-17 23:44:08.489772,2016-11-17 23:44:08.489772,alpha_scorch_height,,,"","","",model +1000000119,"",unitless,SPITFIRE Constant in calculation of dewpoint for Fire Danger Index (FDI),2016-11-17 23:46:29.700678,2016-11-17 23:46:29.700678,fdi_a,,,"","","",model +1000000120,"",unitless,SPITFIRE Constant in calculation of dewpoint for Fire Danger Index (FDI),2016-11-17 23:47:16.050825,2016-11-17 23:47:16.050825,fdi_b,,,"","","",model +1000000121,PPA,cm/m2,"Maximum allowable ""dynamic ratio of dbh to canopy area"" for cohorts in closed canopies.",2016-11-17 23:49:00.748176,2016-11-17 23:49:00.748176,canopy_max_spread,,,"","","",model +1000000269,"","","",2018-03-23 21:46:23.516211,2018-03-23 21:46:23.516211,AGB.pft,,,"","","",model +1000000122,PPA,cm/m2,"Minimum allowable ""dynamic ratio of dbh to canopy area"" for cohorts in closed canopies.",2016-11-17 23:49:44.599749,2016-11-17 23:49:44.599749,canopy_min_spread,,,"","","",model +1000000123,SPITFIRE,proportion,Fraction of coarse woody debris (CWD) that is moved into each of the four woody fuel classes,2016-11-17 23:56:59.600916,2016-11-17 23:56:59.600916,CWD_frac1,,,"","","",model +1000000124,SPITFIRE,proportion,Fraction of coarse woody debris (CWD) that is moved into each of the four woody fuel classes,2016-11-17 23:57:27.748774,2016-11-17 23:57:27.748774,CWD_frac2,,,"","","",model +1000000125,SPITFIRE,proportion,Fraction of coarse woody debris (CWD) that is moved into each of the four woody fuel classes,2016-11-17 23:57:51.620936,2016-11-17 23:57:51.620936,CWD_frac3,,,"","","",model +1000000126,SPITFIRE,proportion,Fraction of coarse woody debris (CWD) that is moved into each of the four woody fuel classes,2016-11-17 23:58:11.982795,2016-11-17 23:58:11.982795,CWD_frac4,,,"","","",model +1000000127,SPITFIRE,unitless,SPITFIRE: Mortality from fire scorching susceptibility parameter,2016-11-18 00:10:50.936942,2016-11-18 00:10:50.936942,crown_kill,,,"","","",model +1000000251,"",second,Second as integer,2017-11-08 02:44:04.672843,2017-11-08 02:44:04.672843,second,,,"","","","" +1000000259,Fraction composition data product,"","",2017-11-08 21:54:38.976233,2017-11-08 21:54:38.976233,pine,,,"","","","" +1000000260,Fraction composition data product,"","",2017-11-08 21:54:48.790533,2017-11-08 21:54:48.790533,spruce,,,"","","","" +1000000212,"","","",2017-06-10 16:59:01.31451,2017-06-10 16:59:01.31451,model_type,,,"","","","" +1000000261,Fraction composition data product,"","",2017-11-08 21:54:58.583212,2017-11-08 21:54:58.583212,other,,,"","","","" +1000000211,"","",Made by Ann Raiho to try to run paleon data products through load_data,2017-06-10 16:56:20.900653,2017-06-12 17:11:21.365764,MCMC_iteration,,,"","","","" +1000000214,Near surface CO2 concentration,micromol mol-1,mstmip standard name,2017-06-13 18:58:09.698186,2017-06-13 18:58:09.698186,CO2air,,,atmosphere_moles_of_carbon_dioxide,mol,"","" +1000000215,Surface incident longwave radiation,W/m2,mstmip standard name ,2017-06-13 19:01:46.912872,2017-06-13 19:01:46.912872,Lwdown,,,surface_downwelling_longwave_flux_in_air,W/m2,"","" +1000000216,Net Primary Production,kg C m-2 s-1,mstmip standard name,2017-06-13 19:04:22.723565,2017-06-13 19:04:22.723565,NPP,,,net_primary_productivity_of_biomass_expressed_as_carbon,kg m-2 s-1,"","" +1000000217,Surface pressure,Pa,mstmip standard name,2017-06-13 19:08:02.724066,2017-06-13 19:08:02.724066,Psurf,,,air_pressure,Pa,"","" +1000000046,"",kg C m-2 s-1,PEcAn output variable (see model2netcdf.DALEC.R),2016-08-09 00:29:53.657138,2017-12-04 04:00:09.926303,LeafLitter,,,"","","","" +1000000050,"","","proposed standard USDA acronym for name of plant, based on United States Department of Agriculture standards. ",2016-09-14 20:32:12.806947,2017-08-30 16:49:26.830833,species_USDA_symbol,,,"","","","" +1000000229,"","","proposed standard FIA acronym for name of plant, based on the Forest Inventory and Analysis national program standard. ",2017-08-30 16:50:35.952885,2017-08-30 16:50:35.952885,species_FIA_symbol,,,"","","","" +1000000266,"",kg C m-2 s-1,pecan standard,2017-12-04 04:00:38.913639,2017-12-04 04:00:38.913639,leaf_litter_carbon_flux,,,"","","","" +1000000230,ratio of fine root to leaf biomass also 'fine root allocation',ratio,same as 'fineroot2leaf',2017-09-07 14:04:44.22434,2017-09-07 14:04:44.22434,q,,,"","","",plant trait +1000000222,Average Layer Fraction of Saturation,"",mstmip standard names,2017-06-13 19:44:19.081647,2017-11-20 20:39:23.943684,SoilMoistFrac,,,mass_fraction_of_unfrozen_water_in_soil_moisture,"","","" +1000000272,"",""," amount that foliar resp. is shutdown if soil is frozen (0 = full shutdown, 1 = no shutdown)",2018-07-04 21:23:14.905701,2018-07-04 21:23:14.905701,frozenSoilFolREff,,,"","","",model-Sipnet +1000000283,"","",Maximum nitrogen uptake per fine root ,2018-11-03 15:08:00.794891,2018-11-03 15:08:00.794891,nup2root_max,,,"","","","" +1000000273,sapwood turnover rate,year-1,initially created for LPJ-GUESS,2018-10-24 14:48:25.480328,2018-10-24 14:48:25.480328,sapwood_turnover_rate,,,"","","","" +1000000231,rate of fine root respiration at reference soil temperature,umol CO_2 kg-1 s-1,same as 'root_respiration_rate',2017-09-07 14:17:17.613038,2017-09-07 14:17:17.613038,root_respiration_factor,,,"","","","" +1000000274,Threshold for growth suppression mortality,kgC m-2 leaf yr-1,LPJ-GUESS parameter,2018-10-24 14:59:55.46545,2018-10-24 14:59:55.46545,greff_min,,,"","","","" +1000000226,"",kg C m-2,"",2017-08-29 18:30:31.045266,2017-08-29 18:30:31.045266,root_carbon_content,,,"","","","" +1000000227,"",kg C m-2,"",2017-08-29 18:31:06.07708,2017-08-29 18:31:06.07708,leaf_carbon_content,,,"","","","" +1000000228,"",kg C m-2,"",2017-08-29 18:31:37.333514,2017-08-29 18:31:37.333514,wood_carbon_content,,,"","","","" +1000000275,"",DOY,"",2018-10-25 14:58:21.98489,2018-10-25 14:58:21.98489,date_of_budburst,,,"","","","" +1000000276,"",DOY,"",2018-10-25 14:59:16.847738,2018-10-25 14:59:16.847738,date_of_senescence,,,"","","","" +1000000292,"",m2 kg-1,Specific Root Area,2019-02-05 20:34:26.283584,2019-02-05 20:34:26.283584,SRA,,,"","","","" +1000000293,"",Ratio,Ratio of actual vessel length (water conducting length) to tree height,2019-02-05 20:36:26.106783,2019-02-05 20:36:26.106783,vessel_curl_factor,,,"","","",model-ED2 +1000000316,"",degrees Celcius day,Phyllochron,2019-09-29 11:56:59.638181,2019-09-29 11:56:59.638181,phyllochron,,,"","","","" +1000000294,Leaf bulk elastic modulus,MPa,ED Hydro (epsil_node in FATES),2019-02-15 03:16:41.989104,2019-02-15 03:26:21.035394,leaf_elastic_mod,,,"","","",plant trait 1000000321,"",g C tiller-1 d-1,"BASGRA parameter: Sink strength of small elongating tillers -",2019-10-27 06:57:30.622257,2019-10-27 06:57:30.622257,elongating_tiller_sink_strength,Infinity,-Infinity,"","","","" -1000000307,"","","Part of ED parameters to find the root depth. (b1Rd, b2Rd)",2019-06-10 18:19:10.211894,2019-06-10 18:19:10.211894,b2Rd,Infinity,-Infinity,"","","","" -1000000371,Ratio of total to aerobic respiration,ratio,"",2020-02-28 07:55:06.460356,2020-02-28 07:55:06.460356,total2RA,Infinity,-Infinity,"","","","" -1000000330,Constant in the calculation of dehardening rate,degrees C-1 day-1,BASGRA parameter,2019-10-27 08:12:40.119493,2019-10-27 08:12:40.119493,Dparam,Infinity,-Infinity,"","","","" -1000000331,Carbohydrate requirement of hardening,g C g-1 C degrees C-1,BASGRA parameter,2019-10-27 08:16:01.647686,2019-10-27 08:16:01.647686,KRESPHARD,Infinity,-Infinity,"","","","" -1000000332,Constant in the logistic curve for frost survival,degrees C-1,BASGRA parameter,2019-10-27 08:16:59.461758,2019-10-27 08:16:59.461758,KRSR3H,Infinity,-Infinity,"","","","" -1000000306,"","","Part of ED parameters to find the root depth. (b1Rd, b2Rd)",2019-06-10 18:18:29.212597,2019-06-10 18:19:26.665869,b1Rd,Infinity,-Infinity,"","","","" -1000000295,Leaf osmotic water potential at saturation,-m,ED Hydro (pinot_node in FATES) NOTE: negative units for fitting prior!,2019-02-15 03:18:21.504594,2019-03-05 20:22:28.692954,leaf_psi_osmotic,Infinity,-Infinity,"","","",plant trait -1000000308,"1=broad_leaved, 0 = not",unitless,binary flag for leafphysiognomy,2019-06-19 21:09:56.441579,2019-06-19 21:09:56.441579,broad_leaved,Infinity,-Infinity,"","","",plant trait -1000000337,C:N ratio in litter,g C g-1 N,C-N ratio of litter,2019-10-27 09:23:10.333334,2019-10-27 09:23:10.333334,c2n_litter,Infinity,-Infinity,"","","","" -1000000034,minimum temperature limit for photosynthesis,degrees C,"",2016-04-29 18:24:55.110619,2018-04-13 17:40:50.552931,pstemp_min,Infinity,-Infinity,"","",Photosynthesis Minimum Temperature,"" -1000000277,"","",Water stress threshold for leaf abscission for stress deciduous trees,2018-11-03 14:05:14.70049,2018-11-03 14:05:14.70049,water_stress_threshold,Infinity,-Infinity,"","","","" -1000000243,"","",rate at which snow melts (cm water equiv./degree C/day),2017-10-01 14:19:15.35891,2018-07-04 20:12:15.290992,snowMelt,Infinity,-Infinity,"","","","" -1000000278,"",ratio,Non-water-stressed ratio of intercellular to ambient CO2 pp,2018-11-03 14:18:46.908007,2018-11-03 14:18:46.908007,ci2ca,Infinity,-Infinity,"","","",plant trait -1000000279,"","",Ratio of roots in each soil layer (upper layer/lower layer where upper layer + lower layer =1),2018-11-03 14:33:27.547002,2018-11-03 14:36:44.519695,root_dist_ratio,Infinity,-Infinity,"","","","" -1000000280,"",m s-1,Minimum canopy conductance not assoc with photosynthesis,2018-11-03 14:40:12.286475,2018-11-03 14:40:12.286475,gcmin,Infinity,-Infinity,"","","","" -1000000187,Autotrptrophic Respiration,kg C m-2 s-1,mstmip standard name,2017-06-02 17:13:47.324865,2017-06-02 17:13:47.324865,AutoResp,Infinity,-Infinity,"","","","" -1000000188,Dissolved Organic Carbon flux,kg C m-2 s-1,In mstmip standard name,2017-06-02 17:17:22.393358,2017-06-02 17:17:22.393358,DOC_flux,Infinity,-Infinity,"","","","" -1000000189,Total Evaporation,kg m-2 s-1,"",2017-06-02 17:19:47.808331,2017-06-02 17:19:47.808331,Evap,Infinity,-Infinity,water_evaporation_amount,kg m-2,"","" -1000000190,Frozen Layer Thickness,m,mstmip standard name,2017-06-02 17:22:51.433968,2017-06-02 17:22:51.433968,Fdepth,Infinity,-Infinity,lwe_thickness_of_frozen_water_content_of_soil_layer,m,"","" -1000000191,Fire emissions,kg C m-2 s-1,mstmip standard name,2017-06-02 17:25:13.97227,2017-06-02 17:25:13.97227,Fire_flux,Infinity,-Infinity,surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_emission_from_fires_excluding_anthropogenic_land_use_change,kg m-2 s-1,"","" -1000000192,Absorbed fraction incoming PAR,"",mstmip standard names,2017-06-02 17:27:26.190969,2017-06-02 17:27:26.190969,fPAR,Infinity,-Infinity,fraction_of_surface_downwelling_photosynthetic_radiative_flux_absorbed_by_vegetation,"","","" -1000000193,Gross Primary Productivity,kg C m-2 s-1,mstmip standard name,2017-06-02 17:30:16.85567,2017-06-02 17:30:16.85567,GPP,Infinity,-Infinity,gross_primary_productivity_of_biomass_expressed_as_carbon,kg C m-2 s-1,"","" -1000000194,Longwave Albedo,-,"",2017-06-02 17:54:13.412842,2017-06-02 17:54:13.412842,LW_albedo,Infinity,-Infinity,"","","","" -1000000281,"",mm day-1,Maximum evapotranspiration rate (mm/day),2018-11-03 14:46:48.813592,2018-11-03 14:46:48.813592,Emax,Infinity,-Infinity,"","","","" -1000000291,Slope of xylem vulnerability curve at P50,MPa−1 * 100,ED Hydro (avuln_node in FATES),2018-11-13 04:32:52.614047,2019-05-23 22:16:16.076945,ax,Infinity,-Infinity,"","","",plant trait -1000000333,Maximum surface temperature at which hardening is possible,degrees C,BASGRA parameter,2019-10-27 08:54:26.78633,2019-10-27 08:54:26.78633,THard_max,Infinity,-Infinity,"","","","" +",2019-10-27 06:57:30.622257,2019-10-27 06:57:30.622257,elongating_tiller_sink_strength,,,"","","","" +1000000307,"","","Part of ED parameters to find the root depth. (b1Rd, b2Rd)",2019-06-10 18:19:10.211894,2019-06-10 18:19:10.211894,b2Rd,,,"","","","" +1000000371,Ratio of total to aerobic respiration,ratio,"",2020-02-28 07:55:06.460356,2020-02-28 07:55:06.460356,total2RA,,,"","","","" +1000000330,Constant in the calculation of dehardening rate,degrees C-1 day-1,BASGRA parameter,2019-10-27 08:12:40.119493,2019-10-27 08:12:40.119493,Dparam,,,"","","","" +1000000331,Carbohydrate requirement of hardening,g C g-1 C degrees C-1,BASGRA parameter,2019-10-27 08:16:01.647686,2019-10-27 08:16:01.647686,KRESPHARD,,,"","","","" +1000000332,Constant in the logistic curve for frost survival,degrees C-1,BASGRA parameter,2019-10-27 08:16:59.461758,2019-10-27 08:16:59.461758,KRSR3H,,,"","","","" +1000000306,"","","Part of ED parameters to find the root depth. (b1Rd, b2Rd)",2019-06-10 18:18:29.212597,2019-06-10 18:19:26.665869,b1Rd,,,"","","","" +1000000295,Leaf osmotic water potential at saturation,-m,ED Hydro (pinot_node in FATES) NOTE: negative units for fitting prior!,2019-02-15 03:18:21.504594,2019-03-05 20:22:28.692954,leaf_psi_osmotic,,,"","","",plant trait +1000000308,"1=broad_leaved, 0 = not",unitless,binary flag for leafphysiognomy,2019-06-19 21:09:56.441579,2019-06-19 21:09:56.441579,broad_leaved,,,"","","",plant trait +1000000337,C:N ratio in litter,g C g-1 N,C-N ratio of litter,2019-10-27 09:23:10.333334,2019-10-27 09:23:10.333334,c2n_litter,,,"","","","" +1000000034,minimum temperature limit for photosynthesis,degrees C,"",2016-04-29 18:24:55.110619,2018-04-13 17:40:50.552931,pstemp_min,,,"","",Photosynthesis Minimum Temperature,"" +1000000277,"","",Water stress threshold for leaf abscission for stress deciduous trees,2018-11-03 14:05:14.70049,2018-11-03 14:05:14.70049,water_stress_threshold,,,"","","","" +1000000243,"","",rate at which snow melts (cm water equiv./degree C/day),2017-10-01 14:19:15.35891,2018-07-04 20:12:15.290992,snowMelt,,,"","","","" +1000000278,"",ratio,Non-water-stressed ratio of intercellular to ambient CO2 pp,2018-11-03 14:18:46.908007,2018-11-03 14:18:46.908007,ci2ca,,,"","","",plant trait +1000000279,"","",Ratio of roots in each soil layer (upper layer/lower layer where upper layer + lower layer =1),2018-11-03 14:33:27.547002,2018-11-03 14:36:44.519695,root_dist_ratio,,,"","","","" +1000000280,"",m s-1,Minimum canopy conductance not assoc with photosynthesis,2018-11-03 14:40:12.286475,2018-11-03 14:40:12.286475,gcmin,,,"","","","" +1000000187,Autotrptrophic Respiration,kg C m-2 s-1,mstmip standard name,2017-06-02 17:13:47.324865,2017-06-02 17:13:47.324865,AutoResp,,,"","","","" +1000000188,Dissolved Organic Carbon flux,kg C m-2 s-1,In mstmip standard name,2017-06-02 17:17:22.393358,2017-06-02 17:17:22.393358,DOC_flux,,,"","","","" +1000000189,Total Evaporation,kg m-2 s-1,"",2017-06-02 17:19:47.808331,2017-06-02 17:19:47.808331,Evap,,,water_evaporation_amount,kg m-2,"","" +1000000190,Frozen Layer Thickness,m,mstmip standard name,2017-06-02 17:22:51.433968,2017-06-02 17:22:51.433968,Fdepth,,,lwe_thickness_of_frozen_water_content_of_soil_layer,m,"","" +1000000191,Fire emissions,kg C m-2 s-1,mstmip standard name,2017-06-02 17:25:13.97227,2017-06-02 17:25:13.97227,Fire_flux,,,surface_upward_mass_flux_of_carbon_dioxide_expressed_as_carbon_due_to_emission_from_fires_excluding_anthropogenic_land_use_change,kg m-2 s-1,"","" +1000000192,Absorbed fraction incoming PAR,"",mstmip standard names,2017-06-02 17:27:26.190969,2017-06-02 17:27:26.190969,fPAR,,,fraction_of_surface_downwelling_photosynthetic_radiative_flux_absorbed_by_vegetation,"","","" +1000000193,Gross Primary Productivity,kg C m-2 s-1,mstmip standard name,2017-06-02 17:30:16.85567,2017-06-02 17:30:16.85567,GPP,,,gross_primary_productivity_of_biomass_expressed_as_carbon,kg C m-2 s-1,"","" +1000000194,Longwave Albedo,-,"",2017-06-02 17:54:13.412842,2017-06-02 17:54:13.412842,LW_albedo,,,"","","","" +1000000281,"",mm day-1,Maximum evapotranspiration rate (mm/day),2018-11-03 14:46:48.813592,2018-11-03 14:46:48.813592,Emax,,,"","","","" +1000000291,Slope of xylem vulnerability curve at P50,MPa−1 * 100,ED Hydro (avuln_node in FATES),2018-11-13 04:32:52.614047,2019-05-23 22:16:16.076945,ax,,,"","","",plant trait +1000000333,Maximum surface temperature at which hardening is possible,degrees C,BASGRA parameter,2019-10-27 08:54:26.78633,2019-10-27 08:54:26.78633,THard_max,,,"","","","" 1000000334,Minimum day length above which generative tillers can start elongating,day day-1,"BASGRA parameter: Minimum day length above which generative tillers can start elongating (by moving from TILG1 to TILG2). -",2019-10-27 08:57:33.709304,2019-10-27 08:57:33.709304,DAYLG1G2,Infinity,-Infinity,"","","","" -1000000311,aerodynamic conductance,m s-1,aerodynamic conductance (m/s),2019-09-09 10:46:50.668388,2019-09-09 10:46:50.668388,ga,Infinity,-Infinity,"","","","" -1000000312,"",mm,Leaf water holding capacity (assuming a temporary leaf pool),2019-09-23 10:28:50.417093,2019-09-23 10:28:50.417093,leafWHC,Infinity,-Infinity,"","","","" -1000000313,Fraction of root biomass below max root depth,"",Root vertical profile parameter. ED HYDRO,2019-09-23 20:28:35.04264,2019-09-23 20:28:35.04264,root_beta,Infinity,-Infinity,"","","","" -1000000268,"","",adding to use for data with multiple pfts like agb.pft,2018-03-23 15:24:47.395985,2018-03-23 15:24:47.395985,pft_name,Infinity,-Infinity,"","","",model -1000000315,"",mm d-1,Transpiration coefficient,2019-09-28 06:49:15.784757,2019-09-28 06:49:15.784757,transpiration_coefficient,Infinity,-Infinity,"","","","" -1000000195,Net Longwave Radiation,W m-2,mstmip standard name,2017-06-02 17:55:50.38756,2017-06-02 17:55:50.38756,Lwnet,Infinity,-Infinity,"","","","" -1000000196,Surface runoff,kg m-2 s-1,mstmip standard name,2017-06-02 18:00:46.85228,2017-06-02 18:00:46.85228,Qs,Infinity,-Infinity,runoff_amount,kg m-2,"","" -1000000197,Sub Surface runoff,kg m-2 s-,mstmip standard name,2017-06-02 18:02:24.249234,2017-06-02 18:02:24.249234,Qsb,Infinity,-Infinity,"","","","" -1000000198,Bulk Snow Density,kg m-3,mstmip standard name,2017-06-02 18:04:47.911047,2017-06-02 18:04:47.911047,SnowDen,Infinity,-Infinity,snow_density,kg m-3,"","" -1000000199,Total snow depth,m,"",2017-06-02 18:06:41.300917,2017-06-02 18:06:41.300917,SnowDepth,Infinity,-Infinity,lwe_thickness_of_surface_snow_amount,m,"","" -1000000082,"",unitless,"Controls the area footprint of a grass pft, as a function of number density and dbh",2016-11-17 22:13:12.25938,2016-11-17 22:13:12.25938,grass_spread,Infinity,-Infinity,"","","",model -1000000237,"","","",2017-10-01 14:17:49.543876,2017-10-01 14:17:49.543876,fracLitterRespired,Infinity,-Infinity,"","","","" -1000000238,"","","",2017-10-01 14:18:08.458827,2017-10-01 14:18:08.458827,waterRemoveFrac,Infinity,-Infinity,"","","","" -1000000239,"","","",2017-10-01 14:18:21.98507,2017-10-01 14:18:21.98507,wueConst,Infinity,-Infinity,"","","","" -1000000240,"","","",2017-10-01 14:18:34.127758,2017-10-01 14:18:34.127758,litterWHC,Infinity,-Infinity,"","","","" -1000000241,"","","",2017-10-01 14:18:47.960244,2017-10-01 14:18:47.960244,immedEvapFrac,Infinity,-Infinity,"","","","" -1000000242,"","","",2017-10-01 14:19:01.53684,2017-10-01 14:19:01.53684,fastFlowFrac,Infinity,-Infinity,"","","","" -1000000244,"","","",2017-10-01 14:19:29.96276,2017-10-01 14:19:29.96276,litWaterDrainRate,Infinity,-Infinity,"","","","" -1000000245,"","","",2017-10-01 14:19:43.946639,2017-10-01 14:19:43.946639,rdConst,Infinity,-Infinity,"","","","" -1000000246,"","","",2017-10-01 14:19:55.992619,2017-10-01 14:19:55.992619,rSoilConst1,Infinity,-Infinity,"","","","" -1000000247,"","","",2017-10-01 14:20:09.132856,2017-10-01 14:20:09.132856,rSoilConst2,Infinity,-Infinity,"","","","" -1000000248,"","","",2017-10-01 14:20:27.544443,2017-10-01 14:20:27.544443,m_ballBerry,Infinity,-Infinity,"","","","" -1000000249,"","","",2017-10-01 14:20:41.030097,2017-10-01 14:20:41.030097,leafCSpWt,Infinity,-Infinity,"","","","" -1000000318,"",m day-1,"",2019-10-03 08:14:28.311326,2019-10-03 08:14:28.311326,root_growth_rate,Infinity,-Infinity,"","","","" -1000000335,"",tiller tiller-1 d-1,BASGRA parameter: Relative rate of TILG1 becoming TILG2,2019-10-27 08:59:30.293308,2019-10-27 08:59:30.293308,RGRTG1G2,Infinity,-Infinity,"","","","" -1000000336,Minimum relative death rate of foliage,day-1,Minimum relative death rate of foliage,2019-10-27 09:05:22.772714,2019-10-27 09:05:22.772714,min_foliage_mort_rate,Infinity,-Infinity,"","","","" -1000000319,"",g m-2 leaf,"",2019-10-03 08:25:08.196894,2019-10-03 08:27:11.715984,rubisco_content,Infinity,-Infinity,"","","","" -1000000289,Water potential at which 50% of stem conductivity is lost,-m,ED Hydro (p50_node in FATES) NOTE: negative units for fitting prior!,2018-11-13 04:30:27.522283,2019-03-05 20:22:28.692954,wood_psi50,Infinity,-Infinity,"","","",plant trait +",2019-10-27 08:57:33.709304,2019-10-27 08:57:33.709304,DAYLG1G2,,,"","","","" +1000000311,aerodynamic conductance,m s-1,aerodynamic conductance (m/s),2019-09-09 10:46:50.668388,2019-09-09 10:46:50.668388,ga,,,"","","","" +1000000312,"",mm,Leaf water holding capacity (assuming a temporary leaf pool),2019-09-23 10:28:50.417093,2019-09-23 10:28:50.417093,leafWHC,,,"","","","" +1000000313,Fraction of root biomass below max root depth,"",Root vertical profile parameter. ED HYDRO,2019-09-23 20:28:35.04264,2019-09-23 20:28:35.04264,root_beta,,,"","","","" +1000000268,"","",adding to use for data with multiple pfts like agb.pft,2018-03-23 15:24:47.395985,2018-03-23 15:24:47.395985,pft_name,,,"","","",model +1000000315,"",mm d-1,Transpiration coefficient,2019-09-28 06:49:15.784757,2019-09-28 06:49:15.784757,transpiration_coefficient,,,"","","","" +1000000195,Net Longwave Radiation,W m-2,mstmip standard name,2017-06-02 17:55:50.38756,2017-06-02 17:55:50.38756,Lwnet,,,"","","","" +1000000196,Surface runoff,kg m-2 s-1,mstmip standard name,2017-06-02 18:00:46.85228,2017-06-02 18:00:46.85228,Qs,,,runoff_amount,kg m-2,"","" +1000000197,Sub Surface runoff,kg m-2 s-,mstmip standard name,2017-06-02 18:02:24.249234,2017-06-02 18:02:24.249234,Qsb,,,"","","","" +1000000198,Bulk Snow Density,kg m-3,mstmip standard name,2017-06-02 18:04:47.911047,2017-06-02 18:04:47.911047,SnowDen,,,snow_density,kg m-3,"","" +1000000199,Total snow depth,m,"",2017-06-02 18:06:41.300917,2017-06-02 18:06:41.300917,SnowDepth,,,lwe_thickness_of_surface_snow_amount,m,"","" +1000000082,"",unitless,"Controls the area footprint of a grass pft, as a function of number density and dbh",2016-11-17 22:13:12.25938,2016-11-17 22:13:12.25938,grass_spread,,,"","","",model +1000000237,"","","",2017-10-01 14:17:49.543876,2017-10-01 14:17:49.543876,fracLitterRespired,,,"","","","" +1000000238,"","","",2017-10-01 14:18:08.458827,2017-10-01 14:18:08.458827,waterRemoveFrac,,,"","","","" +1000000239,"","","",2017-10-01 14:18:21.98507,2017-10-01 14:18:21.98507,wueConst,,,"","","","" +1000000240,"","","",2017-10-01 14:18:34.127758,2017-10-01 14:18:34.127758,litterWHC,,,"","","","" +1000000241,"","","",2017-10-01 14:18:47.960244,2017-10-01 14:18:47.960244,immedEvapFrac,,,"","","","" +1000000242,"","","",2017-10-01 14:19:01.53684,2017-10-01 14:19:01.53684,fastFlowFrac,,,"","","","" +1000000244,"","","",2017-10-01 14:19:29.96276,2017-10-01 14:19:29.96276,litWaterDrainRate,,,"","","","" +1000000245,"","","",2017-10-01 14:19:43.946639,2017-10-01 14:19:43.946639,rdConst,,,"","","","" +1000000246,"","","",2017-10-01 14:19:55.992619,2017-10-01 14:19:55.992619,rSoilConst1,,,"","","","" +1000000247,"","","",2017-10-01 14:20:09.132856,2017-10-01 14:20:09.132856,rSoilConst2,,,"","","","" +1000000248,"","","",2017-10-01 14:20:27.544443,2017-10-01 14:20:27.544443,m_ballBerry,,,"","","","" +1000000249,"","","",2017-10-01 14:20:41.030097,2017-10-01 14:20:41.030097,leafCSpWt,,,"","","","" +1000000318,"",m day-1,"",2019-10-03 08:14:28.311326,2019-10-03 08:14:28.311326,root_growth_rate,,,"","","","" +1000000335,"",tiller tiller-1 d-1,BASGRA parameter: Relative rate of TILG1 becoming TILG2,2019-10-27 08:59:30.293308,2019-10-27 08:59:30.293308,RGRTG1G2,,,"","","","" +1000000336,Minimum relative death rate of foliage,day-1,Minimum relative death rate of foliage,2019-10-27 09:05:22.772714,2019-10-27 09:05:22.772714,min_foliage_mort_rate,,,"","","","" +1000000319,"",g m-2 leaf,"",2019-10-03 08:25:08.196894,2019-10-03 08:27:11.715984,rubisco_content,,,"","","","" +1000000289,Water potential at which 50% of stem conductivity is lost,-m,ED Hydro (p50_node in FATES) NOTE: negative units for fitting prior!,2018-11-13 04:30:27.522283,2019-03-05 20:22:28.692954,wood_psi50,,,"","","",plant trait 1000000320,"","","BASGRA parameter: Area of a leaf relative to a rectangle of same length and width -",2019-10-03 08:34:27.569238,2019-10-03 08:34:27.569238,shape,Infinity,-Infinity,"","","","" +",2019-10-03 08:34:27.569238,2019-10-03 08:34:27.569238,shape,,,"","","","" 1000000287,Leaf hydraulic capacitance,g H2O / kg biomass / m,"ED Hydro -(kg H2O/kg biomass/m) Changed to g in BETY to help with prior fitting ",2018-11-13 04:27:58.617834,2019-03-07 19:48:50.249943,leaf_water_cap,Infinity,-Infinity,"","","",plant trait +(kg H2O/kg biomass/m) Changed to g in BETY to help with prior fitting ",2018-11-13 04:27:58.617834,2019-03-07 19:48:50.249943,leaf_water_cap,,,"","","",plant trait 1000000288,Wood hydraulic capacitance,g H2O / kg biomass / m,"ED Hydro -(kg H2O/kg biomass/m) Changed to g in BETY to help with prior fitting ",2018-11-13 04:28:58.938513,2019-03-07 19:48:50.249943,wood_water_cap,Infinity,-Infinity,"","","",plant trait -1000000323,"",degrees Celcius,Time constant of mobilization of reserves,2019-10-27 07:09:20.388645,2019-10-27 07:09:20.388645,tc_res,Infinity,-Infinity,"","","","" -1000000345,"",day,Time constant of fast SOM decomposition at 10 °C,2019-10-27 10:15:07.56257,2019-10-27 10:15:07.56257,TCSOMF,Infinity,-Infinity,"","","","" -1000000346,"",day,Time constant of slow SOM decomposition at 10 °C,2019-10-27 10:15:26.35915,2019-10-27 10:15:26.35915,TCSOMS,Infinity,-Infinity,"","","","" -1000000347,C-N ratio of fast SOM,g C g-1 N,C-N ratio of fast SOM,2019-10-27 10:20:34.798422,2019-10-27 10:20:34.798422,c2n_fSOM,Infinity,-Infinity,"","","","" -1000000348,C-N ratio of slow SOM,g C g-1 N,C-N ratio of slow SOM,2019-10-27 10:21:34.219638,2019-10-27 10:21:34.219638,c2n_sSOM,Infinity,-Infinity,"","","","" -1000000352,humidity response parameter,kPa,Leuning 1995 empirical coefficient,2019-11-13 16:10:38.083607,2019-11-13 16:10:38.083607,D0,Infinity,-Infinity,"","","",plant trait -1000000357,minimum temperature below which development stops,degrees C,"",2020-01-21 10:44:14.807454,2020-01-21 10:45:07.850199,tdmin,Infinity,-Infinity,degrees C,"","","" -1000000358,maximum temperature above which development stops,degrees C,"",2020-01-21 10:46:16.742154,2020-01-21 10:46:16.742154,tdmax,Infinity,-Infinity,"","","","" -1000000361,optimal temperature for plant growth,degrees C,optimal temperature (1/2) for plant growth,2020-01-23 14:09:05.885958,2020-01-23 14:09:05.885958,teopt,Infinity,-Infinity,"","","","" -1000000362,optimal temperature (2/2) for plant growth,degrees C,optimal temperature (2/2) for plant growth (higher than teopt),2020-01-23 14:09:48.64657,2020-01-23 14:09:48.64657,teoptbis,Infinity,-Infinity,"","","","" -1000000365,cumulative thermal time between the stages of emergence and leaf growth,degree days,"cumulative thermal time between the stages LEV (emergence) and AMF (maximum acceleration of leaf growth, end of juvenile phase) ",2020-01-25 12:30:39.471749,2020-01-25 12:30:39.471749,cum_thermal_juvenile,Infinity,-Infinity,"","","","" -1000000143,ED,"",LLoyd and Taylor 1994,2016-12-22 20:59:08.013128,2016-12-22 20:59:18.762874,rh_lloyd_2,Infinity,-Infinity,"","","",model-ED2 -1000000142,ED,"",LLoyd and Taylor 1994,2016-12-22 20:58:37.626906,2016-12-22 20:59:40.675023,rh_lloyd_1,Infinity,-Infinity,"","","",model-ED2 -1000000144,ED,"",LLoyd and Taylor 1994,2016-12-22 21:00:07.662598,2016-12-22 21:00:07.662598,rh_lloyd_3,Infinity,-Infinity,"","","",model-ED2 -1000000366,cumulative thermal time between leaf growth and maximum LAI,degree days,"cumulative thermal time between the stages AMF (maximum acceleration of leaf growth, end of juvenile phase) and LAX (maximum leaf area index, end of leaf growth)",2020-01-25 12:32:48.429839,2020-01-25 12:32:48.429839,cum_thermal_growth,Infinity,-Infinity,"","","","" -1000000364,maximal lifespan of an adult leaf,Q10,maximal lifespan of an adult leaf expressed in summation of Q10=2(2**(T-Tbase)). STICS parameter,2020-01-24 09:47:11.536315,2020-01-24 09:47:11.536315,leaf_lifespan_max,Infinity,-Infinity,"","","","" -1000000145,ED,1/day,Intrinsic decay rate of structural pool soil carbon (1/days); this is modulated by Lc (former K1),2016-12-22 21:46:32.716253,2016-12-23 02:43:45.538942,decay_rate_stsc,Infinity,-Infinity,decay_rate_stsc,"","",model-ED2 -1000000363,minimum SLA of green leaves,m2 kg-1,"",2020-01-24 09:25:40.304365,2020-01-30 11:07:07.232704,SLAMIN,Infinity,-Infinity,"","","","" -1000000368,Vernalisation threshold,degrees C,"",2020-02-27 12:36:31.151054,2020-02-27 12:36:31.151054,vernalization_threshold,Infinity,-Infinity,"","","","" -1000000369,Fraction of decomposed litter becoming fast SOM,g g-1,"",2020-02-27 12:58:40.855524,2020-02-27 12:58:40.855524,f_litter_SOM_fast,Infinity,-Infinity,"","","","" +(kg H2O/kg biomass/m) Changed to g in BETY to help with prior fitting ",2018-11-13 04:28:58.938513,2019-03-07 19:48:50.249943,wood_water_cap,,,"","","",plant trait +1000000323,"",degrees Celcius,Time constant of mobilization of reserves,2019-10-27 07:09:20.388645,2019-10-27 07:09:20.388645,tc_res,,,"","","","" +1000000345,"",day,Time constant of fast SOM decomposition at 10 °C,2019-10-27 10:15:07.56257,2019-10-27 10:15:07.56257,TCSOMF,,,"","","","" +1000000346,"",day,Time constant of slow SOM decomposition at 10 °C,2019-10-27 10:15:26.35915,2019-10-27 10:15:26.35915,TCSOMS,,,"","","","" +1000000347,C-N ratio of fast SOM,g C g-1 N,C-N ratio of fast SOM,2019-10-27 10:20:34.798422,2019-10-27 10:20:34.798422,c2n_fSOM,,,"","","","" +1000000348,C-N ratio of slow SOM,g C g-1 N,C-N ratio of slow SOM,2019-10-27 10:21:34.219638,2019-10-27 10:21:34.219638,c2n_sSOM,,,"","","","" +1000000352,humidity response parameter,kPa,Leuning 1995 empirical coefficient,2019-11-13 16:10:38.083607,2019-11-13 16:10:38.083607,D0,,,"","","",plant trait +1000000357,minimum temperature below which development stops,degrees C,"",2020-01-21 10:44:14.807454,2020-01-21 10:45:07.850199,tdmin,,,degrees C,"","","" +1000000358,maximum temperature above which development stops,degrees C,"",2020-01-21 10:46:16.742154,2020-01-21 10:46:16.742154,tdmax,,,"","","","" +1000000361,optimal temperature for plant growth,degrees C,optimal temperature (1/2) for plant growth,2020-01-23 14:09:05.885958,2020-01-23 14:09:05.885958,teopt,,,"","","","" +1000000362,optimal temperature (2/2) for plant growth,degrees C,optimal temperature (2/2) for plant growth (higher than teopt),2020-01-23 14:09:48.64657,2020-01-23 14:09:48.64657,teoptbis,,,"","","","" +1000000365,cumulative thermal time between the stages of emergence and leaf growth,degree days,"cumulative thermal time between the stages LEV (emergence) and AMF (maximum acceleration of leaf growth, end of juvenile phase) ",2020-01-25 12:30:39.471749,2020-01-25 12:30:39.471749,cum_thermal_juvenile,,,"","","","" +1000000143,ED,"",LLoyd and Taylor 1994,2016-12-22 20:59:08.013128,2016-12-22 20:59:18.762874,rh_lloyd_2,,,"","","",model-ED2 +1000000142,ED,"",LLoyd and Taylor 1994,2016-12-22 20:58:37.626906,2016-12-22 20:59:40.675023,rh_lloyd_1,,,"","","",model-ED2 +1000000144,ED,"",LLoyd and Taylor 1994,2016-12-22 21:00:07.662598,2016-12-22 21:00:07.662598,rh_lloyd_3,,,"","","",model-ED2 +1000000366,cumulative thermal time between leaf growth and maximum LAI,degree days,"cumulative thermal time between the stages AMF (maximum acceleration of leaf growth, end of juvenile phase) and LAX (maximum leaf area index, end of leaf growth)",2020-01-25 12:32:48.429839,2020-01-25 12:32:48.429839,cum_thermal_growth,,,"","","","" +1000000364,maximal lifespan of an adult leaf,Q10,maximal lifespan of an adult leaf expressed in summation of Q10=2(2**(T-Tbase)). STICS parameter,2020-01-24 09:47:11.536315,2020-01-24 09:47:11.536315,leaf_lifespan_max,,,"","","","" +1000000145,ED,1/day,Intrinsic decay rate of structural pool soil carbon (1/days); this is modulated by Lc (former K1),2016-12-22 21:46:32.716253,2016-12-23 02:43:45.538942,decay_rate_stsc,,,decay_rate_stsc,"","",model-ED2 +1000000363,minimum SLA of green leaves,m2 kg-1,"",2020-01-24 09:25:40.304365,2020-01-30 11:07:07.232704,SLAMIN,,,"","","","" +1000000368,Vernalisation threshold,degrees C,"",2020-02-27 12:36:31.151054,2020-02-27 12:36:31.151054,vernalization_threshold,,,"","","","" +1000000369,Fraction of decomposed litter becoming fast SOM,g g-1,"",2020-02-27 12:58:40.855524,2020-02-27 12:58:40.855524,f_litter_SOM_fast,,,"","","","" 1000000285,Leaf water content at saturation,kg kg-1,"ED Hydro (thetas_node in FATES) -(kg H20/kg biomass)",2018-11-13 04:23:42.547634,2019-02-15 03:26:21.035394,leaf_water_sat,Infinity,-Infinity,"","","",plant trait -1000000374,LAI above which shading induces leaf senescence,m2 m-2,"",2020-03-04 12:44:24.651246,2020-03-04 12:44:24.651246,lai_senescence,Infinity,-Infinity,"","","","" -1000000375,Decrease in tillering with leaf area index,m2 m-2,"",2020-03-04 12:52:26.490757,2020-03-04 12:52:26.490757,lai_til_decrease,Infinity,-Infinity,"","","","" -1000000376,Maximum ratio of tiller and leaf apearance at low leaf area index,ratio,"",2020-03-04 12:57:42.609209,2020-03-04 12:57:42.609209,lai_til2leaf_max,Infinity,-Infinity,"","","","" -1000000382,Relative death rate of leaves and non-elongating tillers due to shading when LAI is twice the threshold (LAICR),day-1,"",2020-03-06 14:12:04.302761,2020-03-06 14:12:04.302761,relative_shading_death,Infinity,-Infinity,"","","","" -1000000284,Leaf turgor loss point,-m,ED Hydro (pitlp_node in FATES) NOTE: negative units for fitting prior!,2018-11-13 04:20:16.570397,2019-03-05 20:22:28.692954,leaf_psi_tlp,Infinity,-Infinity,"","","",plant trait -1000000262,"",ratio,proportion of NPP allocated to wood,2017-11-15 19:14:00.508888,2017-11-15 19:14:00.508888,wood_allocation_fraction,Infinity,-Infinity,"","","",model -1000000350,"",kg C m-2,"",2019-11-11 15:13:00.728686,2019-11-11 15:13:00.728686,soil_organic_matter,Infinity,-Infinity,"","","","" -1000000351,high temperature threshold after which carboxylation drops off,degrees C,"",2019-11-13 15:44:49.377131,2019-11-13 15:44:49.377131,Vm_high_temp,Infinity,-Infinity,"","","",plant trait -1000000353,"",day,Residence time of fast-decomposing OM,2019-11-19 11:55:26.873265,2019-11-19 11:55:26.873265,fOM_residence_time,Infinity,-Infinity,"","","","" -1000000354,"",day,Residence time of slowly decomposing OM,2019-11-19 11:57:38.813747,2019-11-19 11:57:38.813747,sOM_residence_time,Infinity,-Infinity,"","","","" -1000000355,"",day,Residence time of litter,2019-11-19 11:58:06.284935,2019-11-19 11:58:06.284935,litter_residence_time,Infinity,-Infinity,"","","","" -1000000378,Maximum relative rate of tillers becoming elongating tillers,day-1,"",2020-03-04 13:09:58.003933,2020-03-04 13:09:58.003933,til2etil_max_rate,Infinity,-Infinity,"","","","" -1000000359,minimal density above which interplant competition starts,m-2,"",2020-01-23 13:07:44.846402,2020-01-23 13:26:15.580821,dens_comp,Infinity,-Infinity,"","","","" -1000000360,LAI above which competition between plants starts,m2 m-2,"",2020-01-23 13:28:06.226834,2020-01-23 13:28:06.226834,lai_comp,Infinity,-Infinity,"","","","" -1000000200,Average Layer Soil Moisture,kg m-2,mstmip standard names,2017-06-02 18:15:17.534053,2017-06-02 18:15:17.534053,SoilMoist,Infinity,-Infinity,"","","","" -1000000201,Total Soil Wetness (fraction),-,mstmip standard name,2017-06-02 18:30:54.481201,2017-06-02 18:30:54.481201,SoilWet,Infinity,-Infinity,"","","","" -1000000202,Shortwave Albedo,-,"",2017-06-02 18:31:52.559208,2017-06-02 18:31:52.559208,SW_albedo,Infinity,-Infinity,"","","","" -1000000203,Snow Water Equivalent,kg m-2,"",2017-06-02 18:33:58.544496,2017-06-02 18:33:58.544496,SWE,Infinity,-Infinity,"","","","" -1000000204,Net shortwave radiation,W m-2,mstmip standard name,2017-06-02 18:35:18.647706,2017-06-02 18:35:18.647706,SWnet,Infinity,-Infinity,"","","","" -1000000205,Active Layer Thickness,m,mstmip standard name,2017-06-02 18:38:33.515166,2017-06-02 18:38:33.515166,Tdepth,Infinity,-Infinity,"","","","" -1000000206,Total Respiration,kg C m-2 s-1,mstmip standard name,2017-06-02 18:42:14.50277,2017-06-02 18:42:14.50277,TotalResp,Infinity,-Infinity,"","","","" -1000000147,ED,1/day,"Intrinsic decay rate of slow pool soil carbon (1/days), former K3",2016-12-23 02:49:51.633909,2016-12-23 02:58:09.805702,decay_rate_ssc,Infinity,-Infinity,"","","",model-ED2 -1000000149,ED,unitless,Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 18:47:09.147103,2016-12-23 18:47:09.147103,rh_decay_high,Infinity,-Infinity,"","","",model-ED2 -1000000207,Total living biomass,kg C m-2,"",2017-06-02 18:45:37.580021,2017-06-02 18:45:37.580021,TotLivBiom,Infinity,-Infinity,"","","","" -1000000208,Transpiration,kg m-2 s-1,mstmip standard name,2017-06-02 18:50:32.811577,2017-06-02 18:50:44.670345,TVeg,Infinity,-Infinity,"","","","" -1000000303,Sapwood bulk elastic modulus,MPa,ED Hydro (epsil_node in FATES),2019-02-15 03:16:41.989104,2019-02-15 03:26:21.035394,wood_elastic_mod,Infinity,-Infinity,"","","",plant trait -1000000097,C:N for SOM pool 1,unitless,"",2016-11-17 22:53:22.633827,2019-10-27 10:19:39.168096,c2n_som1,Infinity,-Infinity,"","","",model -1000000209,Total Soil Carbon,kg C m-2,mstmip standard name,2017-06-02 18:52:05.918694,2017-06-02 18:52:05.918694,TotSoilCarb,Infinity,-Infinity,"","","","" -1000000210,Near surface module of the wind,m s-1,mstmip standard name,2017-06-02 18:53:03.755968,2017-06-02 18:53:03.755968,Wind,Infinity,-Infinity,"","","","" -1000000098,C:N for SOM pool 2,unitless,"",2016-11-17 22:55:10.207732,2019-10-27 10:27:42.098219,c2n_som2,Infinity,-Infinity,"","","",model -1000000325,Growth yield per unit expended carbohydrate,g C g-1 C,Growth yield per unit expended carbohydrate,2019-10-27 07:17:42.690204,2019-10-27 07:17:42.690204,growthYield,Infinity,-Infinity,"","","","" -1000000324,Optimum temperature for vegetative tillers becoming generative,degrees C,Optimum temperature for vegetative tillers becoming generative,2019-10-27 07:13:50.427483,2019-10-27 07:21:16.841834,TOpt_ge,Infinity,-Infinity,"","","","" +(kg H20/kg biomass)",2018-11-13 04:23:42.547634,2019-02-15 03:26:21.035394,leaf_water_sat,,,"","","",plant trait +1000000374,LAI above which shading induces leaf senescence,m2 m-2,"",2020-03-04 12:44:24.651246,2020-03-04 12:44:24.651246,lai_senescence,,,"","","","" +1000000375,Decrease in tillering with leaf area index,m2 m-2,"",2020-03-04 12:52:26.490757,2020-03-04 12:52:26.490757,lai_til_decrease,,,"","","","" +1000000376,Maximum ratio of tiller and leaf apearance at low leaf area index,ratio,"",2020-03-04 12:57:42.609209,2020-03-04 12:57:42.609209,lai_til2leaf_max,,,"","","","" +1000000382,Relative death rate of leaves and non-elongating tillers due to shading when LAI is twice the threshold (LAICR),day-1,"",2020-03-06 14:12:04.302761,2020-03-06 14:12:04.302761,relative_shading_death,,,"","","","" +1000000284,Leaf turgor loss point,-m,ED Hydro (pitlp_node in FATES) NOTE: negative units for fitting prior!,2018-11-13 04:20:16.570397,2019-03-05 20:22:28.692954,leaf_psi_tlp,,,"","","",plant trait +1000000262,"",ratio,proportion of NPP allocated to wood,2017-11-15 19:14:00.508888,2017-11-15 19:14:00.508888,wood_allocation_fraction,,,"","","",model +1000000350,"",kg C m-2,"",2019-11-11 15:13:00.728686,2019-11-11 15:13:00.728686,soil_organic_matter,,,"","","","" +1000000351,high temperature threshold after which carboxylation drops off,degrees C,"",2019-11-13 15:44:49.377131,2019-11-13 15:44:49.377131,Vm_high_temp,,,"","","",plant trait +1000000353,"",day,Residence time of fast-decomposing OM,2019-11-19 11:55:26.873265,2019-11-19 11:55:26.873265,fOM_residence_time,,,"","","","" +1000000354,"",day,Residence time of slowly decomposing OM,2019-11-19 11:57:38.813747,2019-11-19 11:57:38.813747,sOM_residence_time,,,"","","","" +1000000355,"",day,Residence time of litter,2019-11-19 11:58:06.284935,2019-11-19 11:58:06.284935,litter_residence_time,,,"","","","" +1000000378,Maximum relative rate of tillers becoming elongating tillers,day-1,"",2020-03-04 13:09:58.003933,2020-03-04 13:09:58.003933,til2etil_max_rate,,,"","","","" +1000000359,minimal density above which interplant competition starts,m-2,"",2020-01-23 13:07:44.846402,2020-01-23 13:26:15.580821,dens_comp,,,"","","","" +1000000360,LAI above which competition between plants starts,m2 m-2,"",2020-01-23 13:28:06.226834,2020-01-23 13:28:06.226834,lai_comp,,,"","","","" +1000000200,Average Layer Soil Moisture,kg m-2,mstmip standard names,2017-06-02 18:15:17.534053,2017-06-02 18:15:17.534053,SoilMoist,,,"","","","" +1000000201,Total Soil Wetness (fraction),-,mstmip standard name,2017-06-02 18:30:54.481201,2017-06-02 18:30:54.481201,SoilWet,,,"","","","" +1000000202,Shortwave Albedo,-,"",2017-06-02 18:31:52.559208,2017-06-02 18:31:52.559208,SW_albedo,,,"","","","" +1000000203,Snow Water Equivalent,kg m-2,"",2017-06-02 18:33:58.544496,2017-06-02 18:33:58.544496,SWE,,,"","","","" +1000000204,Net shortwave radiation,W m-2,mstmip standard name,2017-06-02 18:35:18.647706,2017-06-02 18:35:18.647706,SWnet,,,"","","","" +1000000205,Active Layer Thickness,m,mstmip standard name,2017-06-02 18:38:33.515166,2017-06-02 18:38:33.515166,Tdepth,,,"","","","" +1000000206,Total Respiration,kg C m-2 s-1,mstmip standard name,2017-06-02 18:42:14.50277,2017-06-02 18:42:14.50277,TotalResp,,,"","","","" +1000000147,ED,1/day,"Intrinsic decay rate of slow pool soil carbon (1/days), former K3",2016-12-23 02:49:51.633909,2016-12-23 02:58:09.805702,decay_rate_ssc,,,"","","",model-ED2 +1000000149,ED,unitless,Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 18:47:09.147103,2016-12-23 18:47:09.147103,rh_decay_high,,,"","","",model-ED2 +1000000207,Total living biomass,kg C m-2,"",2017-06-02 18:45:37.580021,2017-06-02 18:45:37.580021,TotLivBiom,,,"","","","" +1000000208,Transpiration,kg m-2 s-1,mstmip standard name,2017-06-02 18:50:32.811577,2017-06-02 18:50:44.670345,TVeg,,,"","","","" +1000000303,Sapwood bulk elastic modulus,MPa,ED Hydro (epsil_node in FATES),2019-02-15 03:16:41.989104,2019-02-15 03:26:21.035394,wood_elastic_mod,,,"","","",plant trait +1000000097,C:N for SOM pool 1,unitless,"",2016-11-17 22:53:22.633827,2019-10-27 10:19:39.168096,c2n_som1,,,"","","",model +1000000209,Total Soil Carbon,kg C m-2,mstmip standard name,2017-06-02 18:52:05.918694,2017-06-02 18:52:05.918694,TotSoilCarb,,,"","","","" +1000000210,Near surface module of the wind,m s-1,mstmip standard name,2017-06-02 18:53:03.755968,2017-06-02 18:53:03.755968,Wind,,,"","","","" +1000000098,C:N for SOM pool 2,unitless,"",2016-11-17 22:55:10.207732,2019-10-27 10:27:42.098219,c2n_som2,,,"","","",model +1000000325,Growth yield per unit expended carbohydrate,g C g-1 C,Growth yield per unit expended carbohydrate,2019-10-27 07:17:42.690204,2019-10-27 07:17:42.690204,growthYield,,,"","","","" +1000000324,Optimum temperature for vegetative tillers becoming generative,degrees C,Optimum temperature for vegetative tillers becoming generative,2019-10-27 07:13:50.427483,2019-10-27 07:21:16.841834,TOpt_ge,,,"","","","" 1000000326,Initial value of soil water concentration,m3 m-3,"Initial value of soil water concentration -",2019-10-27 07:28:36.614792,2019-10-27 07:28:36.614792,initial_volume_fraction_of_condensed_water_in_soil,Infinity,-Infinity,"","","","" +",2019-10-27 07:28:36.614792,2019-10-27 07:28:36.614792,initial_volume_fraction_of_condensed_water_in_soil,,,"","","","" 1000000327,Fraction of water concentration for air dryness,"","BASGRA parameter -",2019-10-27 07:59:58.758497,2019-10-27 08:01:57.114375,FWCAD,Infinity,-Infinity,"","","","" -1000000328,Fraction of water concentration for wilting point,"",BASGRA parameter ,2019-10-27 08:00:43.089119,2019-10-27 08:02:19.020437,FWCWP,Infinity,-Infinity,"","","","" -1000000338,fraction of SOC that is fast,g C g-1 C,fraction of SOC that is fast,2019-10-27 09:40:28.104495,2019-10-27 09:40:28.104495,r_fSOC,Infinity,-Infinity,"","","","" -1000000339,Resilience of decomposition to temperature change,degrees C,Tolerance of soil decomposition for suboptimal temperature,2019-10-27 09:46:04.212254,2019-10-27 09:46:42.502139,decomp_res2Tdelta,Infinity,-Infinity,"","","","" +",2019-10-27 07:59:58.758497,2019-10-27 08:01:57.114375,FWCAD,,,"","","","" +1000000328,Fraction of water concentration for wilting point,"",BASGRA parameter ,2019-10-27 08:00:43.089119,2019-10-27 08:02:19.020437,FWCWP,,,"","","","" +1000000338,fraction of SOC that is fast,g C g-1 C,fraction of SOC that is fast,2019-10-27 09:40:28.104495,2019-10-27 09:40:28.104495,r_fSOC,,,"","","","" +1000000339,Resilience of decomposition to temperature change,degrees C,Tolerance of soil decomposition for suboptimal temperature,2019-10-27 09:46:04.212254,2019-10-27 09:46:42.502139,decomp_res2Tdelta,,,"","","","" 1000000340,Temperature at which decomposition is maximal,degrees C,"Temperature at which decomposition is maximal -",2019-10-27 09:56:05.888855,2019-10-27 09:56:05.888855,Tdecomp_max,Infinity,-Infinity,"","","","" +",2019-10-27 09:56:05.888855,2019-10-27 09:56:05.888855,Tdecomp_max,,,"","","","" 1000000342,Time constant of shoot N remobilisation,day,"BASGRA parameter: Time constant of shoot N remobilisation -",2019-10-27 10:00:17.45373,2019-10-27 10:00:17.45373,TCNSHMOB,Infinity,-Infinity,"","","","" +",2019-10-27 10:00:17.45373,2019-10-27 10:00:17.45373,TCNSHMOB,,,"","","","" 1000000341,Time constant of soil mineral N uptake,day,"BASGRA parameter: Time constant of soil mineral Nitrogen uptake -",2019-10-27 09:58:41.060032,2019-10-27 10:03:22.090526,TCNUPT,Infinity,-Infinity,"","","","" -1000000356,"0 = perennial, 1 = annual",unitless,"Binary crop cycle flag: 0. = perennial, 1. = annual ",2019-12-12 13:12:47.556849,2019-12-12 13:12:47.556849,crop_cycle,Infinity,-Infinity,"","","",plant trait -1000000379,Fraction of reserves in elongating tillers that is harvested,ratio,"",2020-03-06 13:39:18.105093,2020-03-06 13:39:18.105093,etil_resv_harv,Infinity,-Infinity,"","","","" -1000000383,"",d d-1,"Day length below which on allocation, tillering, leaf appearance, leaf elongation becomes less than 1",2020-06-18 08:57:57.806477,2020-06-18 08:57:57.806477,daylength_effect,Infinity,-Infinity,"","","","" -1000000322,"",m2 kg-1,Maximum SLA of new leaves,2019-10-27 07:00:06.837704,2020-01-30 11:06:42.360258,SLAMAX,Infinity,-Infinity,"","","","" -1000000150,ED,K,Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 18:55:06.822045,2016-12-23 18:55:06.822045,rh_low_temp,Infinity,-Infinity,"","","",model-ED2 -1000000310,Leaf biomass allometry intercept for adults (ED specific),"","",2019-08-15 18:12:39.487273,2019-08-15 18:14:00.188385,b2Bl_large,Infinity,-Infinity,,,, -1000000309,Leaf biomass allometry slope for adults (ED specific),kg/plant/cm^b2bl,"",2019-08-15 18:12:39.487273,2019-08-15 18:14:00.188385,b1Bl_large,Infinity,-Infinity,,,, -1000000314,"","",Exponent to modify stomatal conductance under water stress,2019-09-24 16:02:13.897263,2019-09-24 16:02:13.897263,stoma_psi_c,Infinity,-Infinity,"","","",plant trait -1000000317,"",m,"",2019-10-03 08:04:02.099129,2019-10-03 08:04:02.099129,rooting_depth,Infinity,-Infinity,"","","","" -1000000367,Maximum refreezing rate per degree below temperature which snow melts,mm day-1 degreeC-1,"",2020-02-27 11:22:32.865222,2020-02-27 11:22:32.865222,max_refreezing_rate,Infinity,-Infinity,"","","","" -1000000370,Fraction of decomposing 'fast' OM that becomes slowly decomposing OM,g g-1,Fraction of decomposed fast SOM,2020-02-27 13:09:27.956697,2020-02-27 13:09:27.956697,fastOM2slowOM,Infinity,-Infinity,"","","","" -1000000372,Day length below which phenological stage is reset to zero,day day-1,"",2020-02-28 15:50:23.423563,2020-02-28 15:50:23.423563,min_daylength_reset,Infinity,-Infinity,"","","","" -1000000373,Day length below which phenological development slows down,day day-1,"",2020-02-28 15:53:29.24267,2020-02-28 15:53:29.24267,min_daylength_slow,Infinity,-Infinity,"","","","" -1000000146,ED,1/day,"intrinsic decay rate of fast pool soil carbon (1/days), former K2",2016-12-23 02:48:47.41553,2016-12-23 02:57:41.390055,decay_rate_fsc,Infinity,-Infinity,"","","",model-ED2 -1000000151,ED,K,Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 18:55:37.512863,2016-12-23 18:55:37.512863,rh_high_temp,Infinity,-Infinity,"","","",model-ED2 -1000000156,Census in year,yr,"The year a tree was first measured, either the year when sampling began or the year when plot expanded in area - GapMacro",2017-02-20 01:08:09.396326,2017-02-20 01:08:09.396326,censinyr,Infinity,-Infinity,"","","","" -1000000035,approximate lower range of optimum temperature for photosynthesis,degrees C,"",2016-04-29 18:49:36.292632,2016-04-29 18:49:36.292632,pstemp_low,Infinity,-Infinity,"","","","" -1000000036,approximate higher range of optimum temperature for photosynthesis,degrees C,"",2016-04-29 18:54:50.100533,2016-04-29 18:54:50.100533,pstemp_high,Infinity,-Infinity,"","","","" -1000000044,"fraction of water that's available if soil is frozen (0 = none available, 1 = all still avail.)",proportion,SIPNET,2016-08-02 16:12:36.0582,2016-08-02 16:12:36.0582,frozenSoilEff,Infinity,-Infinity,"","",frozenSoilEff,model -1000000157,Ingrowth year,yr,"The first year a tree was large enough to be measured, ingrowth year - GapMacro",2017-02-20 01:11:15.336405,2017-02-20 01:11:15.336405,growinyr,Infinity,-Infinity,"","","","" -1000000159,Census out year,yr,The year we stopped tracking the tree for whatever reason (lost tag etc.) - GapMacro,2017-02-20 01:13:35.147034,2017-02-20 01:13:35.147034,censoryr,Infinity,-Infinity,"","","","" -1000000160,Dcast formula,"",Variable to be used in formats to reshape data,2017-02-20 01:47:30.840242,2017-02-20 01:47:30.840242,formula,Infinity,-Infinity,"","","","" -1000000171,"",m3 m-3,no CF but name matches field capacity,2017-04-30 19:51:34.492305,2017-04-30 20:13:31.000584,volume_fraction_of_water_in_soil_at_saturation,Infinity,-Infinity,"","",ThetaSat,ecosystem -1000000162,"","",A/D,2017-03-08 22:22:57.422101,2017-03-08 22:22:57.422101,mortality_status,Infinity,-Infinity,"","","","" -1000000152,ED,"",Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 19:04:33.364533,2016-12-23 19:04:33.364533,rh_dry_smoist,Infinity,-Infinity,"","","",model-ED2 -1000000040,min warmest month mean temperature for establishment,degrees C,"",2016-04-29 19:09:56.662643,2016-04-29 19:09:56.662643,twmin_est,Infinity,-Infinity,"","","","" -1000000038,min coldest month temperature for establishment,degrees C,"",2016-04-29 19:07:07.107855,2016-04-29 19:10:22.206608,tcmin_est,Infinity,-Infinity,"","","","" -1000000037,min coldest month temperature for survival,degrees C,"",2016-04-29 19:06:28.055813,2016-04-29 19:10:44.27684,tcmin_surv,Infinity,-Infinity,"","","","" -1000000039,max coldest month mean temperature for establishment,degrees C,"",2016-04-29 19:08:32.349619,2016-04-29 19:11:07.585834,tcmax_est,Infinity,-Infinity,"","","","" -1000000163,"","","",2017-03-08 22:55:07.42984,2017-03-08 22:55:07.42984,damage_status,Infinity,-Infinity,"","","","" -1000000158,Death year,yr,The year tree recorded as dead - GapMacro,2017-02-20 01:12:22.577733,2017-02-20 01:12:22.577733,deathyr,Infinity,-Infinity,"","","","" -1000000153,ED,"",Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 19:05:05.621916,2016-12-23 19:05:05.621916,rh_wet_smoist,Infinity,-Infinity,"","","",model-ED2 -1000000304,Leaf Density,kg m-3,ED hydro,2019-02-20 07:59:51.919928,2019-02-20 07:59:51.919928,leaf_density,Infinity,-Infinity,,,,plant trait -1000000380,Number of elongating leaves per non-elongating tiller,tiller-1,"",2020-03-06 14:01:15.801212,2020-03-06 14:01:15.801212,n_el2nel,Infinity,-Infinity,"","","","" -1000000384,"","","",2020-08-22 10:49:30.155572,2020-08-22 10:49:30.155572,standard_deviation_of_LAI,Infinity,-Infinity,"","","","" -1000000282,"","",C:N ratio in sapwood,2018-11-03 15:01:43.233814,2018-11-03 15:01:43.233814,c2n_sapwood,Infinity,-Infinity,"","","","" -1000000329,Fraction of water concentration for field capacity,"",BASGRA parameter,2019-10-27 08:01:39.998975,2019-10-27 08:01:39.998975,FWCFC,Infinity,-Infinity,"","","","" -1000000377,Proportionality of leaf senescence with temperature,day-1 degreeC-1,"",2020-03-04 13:02:33.344675,2020-03-04 13:02:33.344675,leaf_senescence_temp_rate,Infinity,-Infinity,"","","","" -1000000298,Sapwood osmotic water potential at saturation,-m,ED Hydro (pinot_node in FATES) NOTE: negative units for fitting prior!,2019-02-15 03:29:43.010625,2019-03-05 20:22:28.692954,wood_psi_osmotic,Infinity,-Infinity,,,,plant trait -1000000299,Leaf minimum water potential based on leaf_rwc_min,-m,ED Hydro NOTE: negative units for fitting prior!,2019-02-15 03:29:43.010625,2019-03-05 20:22:28.692954,leaf_psi_min,Infinity,-Infinity,,,,plant trait -2000000051,"","","dvmdostem calibration variable: maintenance respiration, stem",2020-04-11 16:06:47.58658,2020-04-18 01:19:28.800962,krb_stem,Infinity,-Infinity,"","","",plant trait -1000000300,Sapwood minimum relative water content or Sapwood residual fraction,-m,ED Hydro NOTE: negative units for fitting prior!,2019-02-15 03:29:43.010625,2019-03-05 20:22:28.692954,wood_psi_min,Infinity,-Infinity,,,,plant trait -1000000301,Sapwood water potential at turgor loss point,-m,ED Hydro (pitlp_node in FATES) NOTE: negative units for fitting prior!,2018-11-13 04:20:16.570397,2019-03-05 20:22:28.692954,wood_psi_tlp,Infinity,-Infinity,"","","",plant trait -1000000296,Relative water content at turgor loss point for sapwood,"",ED Hydro (rwctlp_node in FATES),2019-02-15 03:26:21.035394,2019-02-15 03:26:21.035394,rwc_tlp_wood,Infinity,-Infinity,,,,plant trait +",2019-10-27 09:58:41.060032,2019-10-27 10:03:22.090526,TCNUPT,,,"","","","" +1000000356,"0 = perennial, 1 = annual",unitless,"Binary crop cycle flag: 0. = perennial, 1. = annual ",2019-12-12 13:12:47.556849,2019-12-12 13:12:47.556849,crop_cycle,,,"","","",plant trait +1000000379,Fraction of reserves in elongating tillers that is harvested,ratio,"",2020-03-06 13:39:18.105093,2020-03-06 13:39:18.105093,etil_resv_harv,,,"","","","" +1000000383,"",d d-1,"Day length below which on allocation, tillering, leaf appearance, leaf elongation becomes less than 1",2020-06-18 08:57:57.806477,2020-06-18 08:57:57.806477,daylength_effect,,,"","","","" +1000000322,"",m2 kg-1,Maximum SLA of new leaves,2019-10-27 07:00:06.837704,2020-01-30 11:06:42.360258,SLAMAX,,,"","","","" +1000000150,ED,K,Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 18:55:06.822045,2016-12-23 18:55:06.822045,rh_low_temp,,,"","","",model-ED2 +1000000310,Leaf biomass allometry intercept for adults (ED specific),"","",2019-08-15 18:12:39.487273,2019-08-15 18:14:00.188385,b2Bl_large,,,,,, +1000000309,Leaf biomass allometry slope for adults (ED specific),kg/plant/cm^b2bl,"",2019-08-15 18:12:39.487273,2019-08-15 18:14:00.188385,b1Bl_large,,,,,, +1000000314,"","",Exponent to modify stomatal conductance under water stress,2019-09-24 16:02:13.897263,2019-09-24 16:02:13.897263,stoma_psi_c,,,"","","",plant trait +1000000317,"",m,"",2019-10-03 08:04:02.099129,2019-10-03 08:04:02.099129,rooting_depth,,,"","","","" +1000000367,Maximum refreezing rate per degree below temperature which snow melts,mm day-1 degreeC-1,"",2020-02-27 11:22:32.865222,2020-02-27 11:22:32.865222,max_refreezing_rate,,,"","","","" +1000000370,Fraction of decomposing 'fast' OM that becomes slowly decomposing OM,g g-1,Fraction of decomposed fast SOM,2020-02-27 13:09:27.956697,2020-02-27 13:09:27.956697,fastOM2slowOM,,,"","","","" +1000000372,Day length below which phenological stage is reset to zero,day day-1,"",2020-02-28 15:50:23.423563,2020-02-28 15:50:23.423563,min_daylength_reset,,,"","","","" +1000000373,Day length below which phenological development slows down,day day-1,"",2020-02-28 15:53:29.24267,2020-02-28 15:53:29.24267,min_daylength_slow,,,"","","","" +1000000146,ED,1/day,"intrinsic decay rate of fast pool soil carbon (1/days), former K2",2016-12-23 02:48:47.41553,2016-12-23 02:57:41.390055,decay_rate_fsc,,,"","","",model-ED2 +1000000151,ED,K,Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 18:55:37.512863,2016-12-23 18:55:37.512863,rh_high_temp,,,"","","",model-ED2 +1000000156,Census in year,yr,"The year a tree was first measured, either the year when sampling began or the year when plot expanded in area - GapMacro",2017-02-20 01:08:09.396326,2017-02-20 01:08:09.396326,censinyr,,,"","","","" +1000000035,approximate lower range of optimum temperature for photosynthesis,degrees C,"",2016-04-29 18:49:36.292632,2016-04-29 18:49:36.292632,pstemp_low,,,"","","","" +1000000036,approximate higher range of optimum temperature for photosynthesis,degrees C,"",2016-04-29 18:54:50.100533,2016-04-29 18:54:50.100533,pstemp_high,,,"","","","" +1000000044,"fraction of water that's available if soil is frozen (0 = none available, 1 = all still avail.)",proportion,SIPNET,2016-08-02 16:12:36.0582,2016-08-02 16:12:36.0582,frozenSoilEff,,,"","",frozenSoilEff,model +1000000157,Ingrowth year,yr,"The first year a tree was large enough to be measured, ingrowth year - GapMacro",2017-02-20 01:11:15.336405,2017-02-20 01:11:15.336405,growinyr,,,"","","","" +1000000159,Census out year,yr,The year we stopped tracking the tree for whatever reason (lost tag etc.) - GapMacro,2017-02-20 01:13:35.147034,2017-02-20 01:13:35.147034,censoryr,,,"","","","" +1000000160,Dcast formula,"",Variable to be used in formats to reshape data,2017-02-20 01:47:30.840242,2017-02-20 01:47:30.840242,formula,,,"","","","" +1000000171,"",m3 m-3,no CF but name matches field capacity,2017-04-30 19:51:34.492305,2017-04-30 20:13:31.000584,volume_fraction_of_water_in_soil_at_saturation,,,"","",ThetaSat,ecosystem +1000000162,"","",A/D,2017-03-08 22:22:57.422101,2017-03-08 22:22:57.422101,mortality_status,,,"","","","" +1000000152,ED,"",Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 19:04:33.364533,2016-12-23 19:04:33.364533,rh_dry_smoist,,,"","","",model-ED2 +1000000040,min warmest month mean temperature for establishment,degrees C,"",2016-04-29 19:09:56.662643,2016-04-29 19:09:56.662643,twmin_est,,,"","","","" +1000000038,min coldest month temperature for establishment,degrees C,"",2016-04-29 19:07:07.107855,2016-04-29 19:10:22.206608,tcmin_est,,,"","","","" +1000000037,min coldest month temperature for survival,degrees C,"",2016-04-29 19:06:28.055813,2016-04-29 19:10:44.27684,tcmin_surv,,,"","","","" +1000000039,max coldest month mean temperature for establishment,degrees C,"",2016-04-29 19:08:32.349619,2016-04-29 19:11:07.585834,tcmax_est,,,"","","","" +1000000163,"","","",2017-03-08 22:55:07.42984,2017-03-08 22:55:07.42984,damage_status,,,"","","","" +1000000158,Death year,yr,The year tree recorded as dead - GapMacro,2017-02-20 01:12:22.577733,2017-02-20 01:12:22.577733,deathyr,,,"","","","" +1000000153,ED,"",Parameters used for the ED-1.0/CENTURY based functions of temperature and soil moisture.,2016-12-23 19:05:05.621916,2016-12-23 19:05:05.621916,rh_wet_smoist,,,"","","",model-ED2 +1000000304,Leaf Density,kg m-3,ED hydro,2019-02-20 07:59:51.919928,2019-02-20 07:59:51.919928,leaf_density,,,,,,plant trait +1000000380,Number of elongating leaves per non-elongating tiller,tiller-1,"",2020-03-06 14:01:15.801212,2020-03-06 14:01:15.801212,n_el2nel,,,"","","","" +1000000384,"","","",2020-08-22 10:49:30.155572,2020-08-22 10:49:30.155572,standard_deviation_of_LAI,,,"","","","" +1000000282,"","",C:N ratio in sapwood,2018-11-03 15:01:43.233814,2018-11-03 15:01:43.233814,c2n_sapwood,,,"","","","" +1000000329,Fraction of water concentration for field capacity,"",BASGRA parameter,2019-10-27 08:01:39.998975,2019-10-27 08:01:39.998975,FWCFC,,,"","","","" +1000000377,Proportionality of leaf senescence with temperature,day-1 degreeC-1,"",2020-03-04 13:02:33.344675,2020-03-04 13:02:33.344675,leaf_senescence_temp_rate,,,"","","","" +1000000298,Sapwood osmotic water potential at saturation,-m,ED Hydro (pinot_node in FATES) NOTE: negative units for fitting prior!,2019-02-15 03:29:43.010625,2019-03-05 20:22:28.692954,wood_psi_osmotic,,,,,,plant trait +1000000299,Leaf minimum water potential based on leaf_rwc_min,-m,ED Hydro NOTE: negative units for fitting prior!,2019-02-15 03:29:43.010625,2019-03-05 20:22:28.692954,leaf_psi_min,,,,,,plant trait +2000000051,"","","dvmdostem calibration variable: maintenance respiration, stem",2020-04-11 16:06:47.58658,2020-04-18 01:19:28.800962,krb_stem,,,"","","",plant trait +1000000300,Sapwood minimum relative water content or Sapwood residual fraction,-m,ED Hydro NOTE: negative units for fitting prior!,2019-02-15 03:29:43.010625,2019-03-05 20:22:28.692954,wood_psi_min,,,,,,plant trait +1000000301,Sapwood water potential at turgor loss point,-m,ED Hydro (pitlp_node in FATES) NOTE: negative units for fitting prior!,2018-11-13 04:20:16.570397,2019-03-05 20:22:28.692954,wood_psi_tlp,,,"","","",plant trait +1000000296,Relative water content at turgor loss point for sapwood,"",ED Hydro (rwctlp_node in FATES),2019-02-15 03:26:21.035394,2019-02-15 03:26:21.035394,rwc_tlp_wood,,,,,,plant trait 1000000286,Wood water content at saturation,kg kg-1,"ED Hydro (thetas_node in FATES) -(kg H20/kg biomass)",2018-11-13 04:26:08.982445,2019-02-15 03:35:50.302845,wood_water_sat,Infinity,-Infinity,"","","",plant trait -1000000290,Maximum hydraulic conductivity of the stem,kg m-1 s-1 m-1,ED Hydro (kmax_node in FATES),2018-11-13 04:32:23.5136,2019-02-15 03:36:27.779417,wood_Kmax,Infinity,-Infinity,"","","",plant trait -1000000267,"",unitless,percent cover. Can be multiplied by an area for a density. ,2018-03-07 18:48:15.730203,2018-03-07 18:48:15.730203,vegetation_area_fraction,Infinity,-Infinity,vegetation_area_fraction,vegetation_area_fraction,"",model-ED2 -1000000343,Nitrogen in mineral form,g N m-2,Nitrogen in mineral form,2019-10-27 10:04:38.851509,2019-10-27 10:04:38.851509,NMIN,Infinity,-Infinity,"","","","" -1000000381,Phenological stage above which elongation and appearance of leaves on elongating tillers decreases,"","",2020-03-06 14:06:11.766834,2020-03-06 14:06:11.766834,phen_etil_decrease,Infinity,-Infinity,"","","","" -1000000305,Exponent for the hydraulic vulnerability curve of stem conductivity under the Weibull function 1/(1+(psi/psi50) ** Kexp_stem),unitless,ED Hydro,2019-05-23 23:05:21.62609,2019-05-23 23:05:21.62609,wood_Kexp,Infinity,-Infinity,,,,plant trait -2000000006,Leaf Dry Matter Content,mg g-1,Leaf dry matter content (LDMC) is the ratio of leaf dry mass to fresh mass. Typically LDMC is relative to the fully turgid fresh weight of the leaf.,2015-10-29 19:21:20.633456,2015-10-29 19:22:00.764391,LDMC,Infinity,-Infinity,"",1,LDMC,plant trait -2000000001,Wood radiative transmission for ED2,0-1,"",2015-08-21 20:53:03.930906,2015-08-21 20:53:03.930906,wood_trans_vis,Infinity,-Infinity,"","","",model-ED2 -2000000002,Wood radiative reflectance for ED2,0-1,"",2015-08-21 20:53:47.566578,2015-08-21 20:53:47.566578,wood_reflect_vis,Infinity,-Infinity,"","","",model-ED2 -2000000003,Wood NIR radiative reflectance for ED2,0-1,"",2015-08-21 20:54:15.298668,2015-08-21 20:54:15.298668,wood_reflect_nir,Infinity,-Infinity,"","","","" -2000000004,Wood NIR radiative transmission for ED2,0-1,"",2015-08-21 20:54:53.343233,2015-08-21 20:54:53.343233,wood_trans_nir,Infinity,-Infinity,"","","",model-ED2 -2000000005,"","","",2015-08-21 21:26:11.254899,2015-08-21 21:26:11.254899,orient_factor,Infinity,-Infinity,"","","",model-ED2 +(kg H20/kg biomass)",2018-11-13 04:26:08.982445,2019-02-15 03:35:50.302845,wood_water_sat,,,"","","",plant trait +1000000290,Maximum hydraulic conductivity of the stem,kg m-1 s-1 m-1,ED Hydro (kmax_node in FATES),2018-11-13 04:32:23.5136,2019-02-15 03:36:27.779417,wood_Kmax,,,"","","",plant trait +1000000267,"",unitless,percent cover. Can be multiplied by an area for a density. ,2018-03-07 18:48:15.730203,2018-03-07 18:48:15.730203,vegetation_area_fraction,,,vegetation_area_fraction,vegetation_area_fraction,"",model-ED2 +1000000343,Nitrogen in mineral form,g N m-2,Nitrogen in mineral form,2019-10-27 10:04:38.851509,2019-10-27 10:04:38.851509,NMIN,,,"","","","" +1000000381,Phenological stage above which elongation and appearance of leaves on elongating tillers decreases,"","",2020-03-06 14:06:11.766834,2020-03-06 14:06:11.766834,phen_etil_decrease,,,"","","","" +1000000305,Exponent for the hydraulic vulnerability curve of stem conductivity under the Weibull function 1/(1+(psi/psi50) ** Kexp_stem),unitless,ED Hydro,2019-05-23 23:05:21.62609,2019-05-23 23:05:21.62609,wood_Kexp,,,,,,plant trait +2000000006,Leaf Dry Matter Content,mg g-1,Leaf dry matter content (LDMC) is the ratio of leaf dry mass to fresh mass. Typically LDMC is relative to the fully turgid fresh weight of the leaf.,2015-10-29 19:21:20.633456,2015-10-29 19:22:00.764391,LDMC,,,"",1,LDMC,plant trait +2000000001,Wood radiative transmission for ED2,0-1,"",2015-08-21 20:53:03.930906,2015-08-21 20:53:03.930906,wood_trans_vis,,,"","","",model-ED2 +2000000002,Wood radiative reflectance for ED2,0-1,"",2015-08-21 20:53:47.566578,2015-08-21 20:53:47.566578,wood_reflect_vis,,,"","","",model-ED2 +2000000003,Wood NIR radiative reflectance for ED2,0-1,"",2015-08-21 20:54:15.298668,2015-08-21 20:54:15.298668,wood_reflect_nir,,,"","","","" +2000000004,Wood NIR radiative transmission for ED2,0-1,"",2015-08-21 20:54:53.343233,2015-08-21 20:54:53.343233,wood_trans_nir,,,"","","",model-ED2 +2000000005,"","","",2015-08-21 21:26:11.254899,2015-08-21 21:26:11.254899,orient_factor,,,"","","",model-ED2 2000000039,Ratio describing the balance between Jmax and Vcmax,none,"The balance between the capacities of RuBP (ribulose1,5-bisphosphate) -carboxylation (Vcmax) and RuBP regeneration (expressed as the maximum electron transport rate, Jmax) determines the CO2 dependence of the photosynthetic rate.",2018-10-11 11:35:01.503101,2018-10-11 11:35:01.503101,JV_ratio,Infinity,-Infinity,"",none,JV_ratio,plant trait +carboxylation (Vcmax) and RuBP regeneration (expressed as the maximum electron transport rate, Jmax) determines the CO2 dependence of the photosynthetic rate.",2018-10-11 11:35:01.503101,2018-10-11 11:35:01.503101,JV_ratio,,,"",none,JV_ratio,plant trait 2000000007,"Medlyn et al., (2011)",ratio,"gs = 1.6(1+(g1/sqrt(VPD))*(A/Cs) -Medlyn, B. E. et al. Reconciling the optimal and empirical approaches to modelling stomatal conductance. Glob. Change Biol. 17, 2134–2144 (2011).",2016-09-16 14:49:57.399407,2016-09-16 15:33:21.699712,stomatal_slope.g1,Infinity,-Infinity,"","","",plant trait -2000000036,Leaf assimilation rate,kg C m-2 s-1,"",2018-08-27 16:04:45.686246,2018-08-27 16:04:45.686246,assimilation_rate,Infinity,-Infinity,"",kg C m-2 s-1,assimilation_rate,"" -2000000014,Maximum canopy conductance,m s-1,"",2017-09-11 14:00:12.764385,2017-09-11 14:00:12.764385,gcmax,Infinity,-Infinity,"","","","" -2000000034,timestep,"",timestep,2018-08-22 21:17:12.973644,2018-08-22 21:17:12.973644,time,Infinity,-Infinity,"","",timestep,"" -2000000035,leaf mesophyll CO2 concentration,Pa,"",2018-08-23 17:55:36.782263,2018-08-23 17:55:36.782263,Cc,Infinity,-Infinity,"","",Cc,"" -2000000041,"","",dvmdostem calibration variable,2020-04-11 15:51:41.050213,2020-04-11 15:51:41.050213,cmax,Infinity,-Infinity,"","","",plant trait -2000000042,"","",dvmdostem calibration variable,2020-04-11 15:52:16.516105,2020-04-11 15:52:29.665782,nmax,Infinity,-Infinity,"","","",plant trait -2000000043,"","",dvmdostem calibration variable,2020-04-11 15:54:32.201528,2020-04-11 15:54:32.201528,cfall_leaf,Infinity,-Infinity,"","","",plant trait -2000000038,Surface incident shortwave radiation,W m-2,Surface incident shortwave radiation,2018-09-20 19:02:07.905307,2018-09-20 19:02:07.905307,SWdown,Infinity,-Infinity,surface_downwelling_shortwave_flux_in_air,W m-2,SWdown,"" -2000000044,"","",dvmdostem calibration variable,2020-04-11 15:56:03.239211,2020-04-11 15:56:03.239211,cfall_stem,Infinity,-Infinity,"","","",plant trait -2000000045,"","",dvmdostem calibration variable,2020-04-11 15:57:03.680339,2020-04-11 15:57:03.680339,cfall_root,Infinity,-Infinity,"","","",plant trait -2000000046,"","",dvmdostem calibration variable,2020-04-11 15:58:16.173115,2020-04-11 15:58:16.173115,nfall_root,Infinity,-Infinity,"","","",plant trait -2000000047,"","",dvmdostem calibration variable,2020-04-11 15:58:45.052392,2020-04-11 15:58:45.052392,nfall_stem,Infinity,-Infinity,"","","",plant trait -2000000028,Labile nitrogen concentration,percent,DVM-DOS-TEM labile nitrogen pool concentration parameter,2017-11-30 20:03:22.889748,2017-11-30 20:03:22.889748,labncon,Infinity,-Infinity,"","",labncon,plant trait -2000000015,extinction coeff for conversion from lai to fpc,"",dvm-dos-tem parameter: extinction coeff for conversion from lai to fpc,2017-11-17 12:46:42.244975,2017-11-17 12:46:42.244975,klai,Infinity,-Infinity,"","",klai,"" -2000000025,Rate of increase in the parameter to the optimum,kJ mol-1,Ha gives the rate of exponential increase of the function below the optimum (and is analogous to parameter Ev in the Arrhenius function),2017-11-28 15:00:52.943381,2017-11-28 15:01:43.12302,Ha_Modified_Arrhenius_Vcmax,Infinity,-Infinity,"","",Ha_Modified_Arrhenius_Vcmax,plant trait -2000000016,Fine root production percentage,percent,dvmdostem parameter controlling the percentage of fine root production at 30 cm depth,2017-11-17 12:53:46.717046,2017-11-17 12:59:38.058869,frprod_perc_30,Infinity,-Infinity,"","",frprod_perc_30,plant trait -2000000026,Rate of decrease of the parameter from the optimum,kJ mol-1,Hd describes the rate of decrease of the function above the optimum,2017-11-28 15:02:33.114297,2017-11-28 15:02:48.937337,Hd_Modified_Arrhenius_Vcmax,Infinity,-Infinity,"","",Hd_Modified_Arrhenius_Vcmax,plant trait -2000000032,Entropy term in the modified Arrhenius function,J mol-1 K-1,Entropy term in the modified Arrhenius function,2018-03-13 12:00:57.77328,2018-03-13 12:03:10.669157,deltaS_Vcmax,Infinity,-Infinity,deltaS,J mol-1 K-1,deltaS_Vcmax,plant trait -2000000048,"","",dvmdostem calibration variable,2020-04-11 15:59:31.664216,2020-04-11 15:59:31.664216,nfall_leaf,Infinity,-Infinity,"","","",plant trait -2000000033,Entropy term in the modified Arrhenius function,J mol-1 K-1,Entropy term in the modified Arrhenius function,2018-03-13 12:03:37.052076,2018-03-13 12:04:48.19407,deltaS_Jmax,Infinity,-Infinity,deltaS,J mol-1 K-1,deltaS_Jmax,plant trait -2000000054,"","",dvmdostem calibration variable: soil microbial N immobilization,2020-04-13 15:34:03.160218,2020-04-13 15:34:16.668081,micbnup,Infinity,-Infinity,"","","",ecosystem -2000000055,"","",dvmdostem calibration variable: litter C decomposition rate,2020-04-13 15:35:15.770192,2020-04-13 15:35:15.770192,kdcrawc,Infinity,-Infinity,"","","",ecosystem -2000000049,"","",dvmdostem calibration variable: maintenance respiration,2020-04-11 16:05:18.27849,2020-04-11 16:05:18.27849,kra,Infinity,-Infinity,"","","",plant trait -2000000056,"","",dvmdostem calibration variable,2020-04-13 15:35:55.006163,2020-04-13 15:35:55.006163,kdcsoma,Infinity,-Infinity,"","","",ecosystem -2000000057,"","",dvmdostem calibration variable,2020-04-13 15:36:58.155525,2020-04-13 15:36:58.155525,kdcsompr,Infinity,-Infinity,"","","",ecosystem -2000000050,"","","dvmdostem calibration variable: maintenance respiration, leaf",2020-04-11 16:06:07.814796,2020-04-18 01:18:58.805636,krb_leaf,Infinity,-Infinity,"","","",plant trait -2000000009,Rate of increase in the parameter to the optimum,kJ mol-1,Ha gives the rate of exponential increase of the function below the optimum (and is analogous to parameter Ev in the Arrhenius function),2016-09-19 12:11:46.62096,2016-09-19 12:26:57.051525,Ha_Modified_Arrhenius_Jmax,Infinity,-Infinity,"","","",plant trait -2000000010,Rate of decrease of the parameter from the optimum,kJ mol-1,Hd describes the rate of decrease of the function above the optimum,2016-09-19 12:14:12.597747,2016-09-19 12:27:18.757267,Hd_Modified_Arrhenius_Jmax,Infinity,-Infinity,"","","",plant trait -2000000008,The activation energy for Jmax (Ej) derived from an Arrhenius model,kJ mol-1,"The activation energy for Jmax (Ej) derived from an Arrhenius model. This parameter is used to scale the value of Jmax at the measurement temperature to an estimated value at another temperature based on the exponential form of the Arrhenius model: f(Tk) = Jmax25*exp[(Ej*(Tk-298.15))/(298.15*R*Tk)]; where Tk is the leaf temperature in Kelvin, Jmax25 is the value of Jmax at 25 degC, and R is the ideal gas constant. When entered into BETY the Jmax value at 25 degC should be entered as a covariate. ",2016-09-16 21:36:47.70389,2016-09-16 21:40:11.64151,Ej_Arrhenius,Infinity,-Infinity,"","","",plant trait -2000000027,The parameter that describes the curvature (smoothness) between light-limited and CO2 limited photosynthetic rate,untless,"The parameter that describes the curvature (smoothness) between light-limited and CO2 limited photosynthetic rate. Also known as the ""convexity"" of the light response. Originally described in Farqhuar & Wong (1984), An Empirical Model of Stomatal Conductance in equation A3 where they set convexity to 0.67 and then later described by Long and Hällgren 1993 and Bernacchi et al, 2003 in equations 2 and 7. Unitless",2017-11-30 12:56:13.481376,2018-04-17 17:47:50.574575,theta,Infinity,-Infinity,convexity,"",theta,plant trait -2000000053,"","",dvmdostem calibration variable: NPP fraction for growth respiration,2020-04-11 16:08:21.846065,2020-04-11 16:08:21.846065,frg,Infinity,-Infinity,"","","",plant trait -2000000058,"","",dvmdostem calibration variable,2020-04-13 15:37:28.787466,2020-04-13 15:37:28.787466,kdcsomcr,Infinity,-Infinity,"","","",ecosystem -2000000052,"","","dvmdostem calibration variable: maintenance respiration, root",2020-04-11 16:07:27.352811,2020-04-18 01:19:13.213274,krb_root,Infinity,-Infinity,"","","",plant trait -2000000018,initial LAI,m2 m-2,initial LAI,2017-11-17 13:02:42.423919,2017-11-17 13:02:42.423919,ilai,Infinity,-Infinity,"",m2 m-2,ilai,plant trait -2000000019,rainfall interception,"",ircoef: rainfall interception,2017-11-17 13:06:41.942188,2017-11-17 13:06:41.942188,rainfall_interception,Infinity,-Infinity,"","",rainfall_interception,plant trait -2000000020,snow interception,"",iscoef: snow interception,2017-11-17 13:07:16.306374,2017-11-17 13:07:16.306374,snow_interception,Infinity,-Infinity,"","",snow_interception,plant trait -2000000021,ppfd50,umols m2 s-1,"",2017-11-17 13:10:29.675361,2017-11-17 13:10:29.675361,ppfd50,Infinity,-Infinity,"","",ppfd50,plant trait -2000000022,vpd for fully open stomata,kPa,vpd_open: vpd (pa) for leaf stomata fully openness,2017-11-17 13:19:05.577781,2017-11-17 13:30:30.597792,vpd_open,Infinity,-Infinity,"","",vpd_open,plant trait -2000000023,vpd for fully closed stomata,kPa,vpd_close: vpd (pa) for leaf stomata fully closure,2017-11-17 13:19:32.612318,2017-11-17 13:31:19.762421,vpd_close,Infinity,-Infinity,"","",vpd_close,plant trait -2000000040,Minimum rate of stomatal conductance,kg m-2 s-1,"Otherwise known as ""g0"" or the intercept of the gs/A relationship. Also known as cuticular_conductance in the Ball-Berry model. This pertains to Medlyn et al 2011 and perhaps Leuning et al. 1995",2018-10-11 16:07:53.385578,2018-10-11 16:09:46.857222,minimum_stomatal_conductance,Infinity,-Infinity,"",kg m-2 s-1,g0,plant trait -2000000017,Fine root production percentage,percent,dvmdostem parameter controlling the percentage of fine root production at 40 cm depth,2017-11-17 12:58:43.435309,2017-11-23 13:50:42.927809,frprod_perc_40,Infinity,-Infinity,"","",frprod_perc_40,plant trait -2000000024,Fine root production percentage,percent,dvmdostem parameter controlling the percentage of fine root production at 50 cm depth ,2017-11-23 13:51:08.208015,2017-11-23 13:51:59.041619,frprod_perc_50,Infinity,-Infinity,"","",frprod_perc_50,plant trait -2000000029,Fraction of absorbed light not used for photosynthesis,percent,Fraction of absorbed light not used for photosynthesis,2017-12-01 20:53:08.683109,2017-12-01 21:02:54.974167,f_frac,Infinity,-Infinity,"","",f_frac,plant trait -2000000011,"","",plot name or number,2017-02-03 15:44:27.267557,2017-02-03 15:44:27.267557,Plot,Infinity,-Infinity,"","","","" -2000000012,"","",subplot name or number,2017-02-03 15:44:51.062766,2017-02-03 15:44:51.062766,Subplot,Infinity,-Infinity,"","","","" -2000000013,"","","",2017-02-03 16:05:36.849111,2017-02-03 16:05:36.849111,Tree_number,Infinity,-Infinity,"","","","" -2000000030,Optimum temperature for Vcmax,degrees C,Optimum temperature for Vcmax in the modified Arrhenius temperature response function ,2018-03-12 16:45:12.394201,2018-03-12 16:45:12.394201,psnTOpt_Vcmax,Infinity,-Infinity,"",Kelvin,psnTOpt_Vcmax,plant trait -2000000031,Optimum temperature for Jmax,degrees C,Optimum temperature for Jmax in the modified Arrhenius function,2018-03-12 16:45:55.994643,2018-03-12 16:46:26.492296,psnTOpt_Jmax,Infinity,-Infinity,"",Kelvin,psnTOpt_Jmax,plant trait -5000000001,POSIX convention datetime variable,ymd_hms,Used for parsing a time stamp in data files,2016-06-28 16:47:25.178816,2016-06-28 17:41:57.919374,datetime,Infinity,-Infinity,time,Days since 1700-01-01 00:00:00 UTC,"",model -5000000002,Soil Respiration,kg C m-2 s-1,mstmip standard name,2019-09-11 20:53:01.029715,2019-09-11 20:53:45.671776,SoilResp,Infinity,-Infinity,"","","","" +Medlyn, B. E. et al. Reconciling the optimal and empirical approaches to modelling stomatal conductance. Glob. Change Biol. 17, 2134–2144 (2011).",2016-09-16 14:49:57.399407,2016-09-16 15:33:21.699712,stomatal_slope.g1,,,"","","",plant trait +2000000036,Leaf assimilation rate,kg C m-2 s-1,"",2018-08-27 16:04:45.686246,2018-08-27 16:04:45.686246,assimilation_rate,,,"",kg C m-2 s-1,assimilation_rate,"" +2000000014,Maximum canopy conductance,m s-1,"",2017-09-11 14:00:12.764385,2017-09-11 14:00:12.764385,gcmax,,,"","","","" +2000000034,timestep,"",timestep,2018-08-22 21:17:12.973644,2018-08-22 21:17:12.973644,time,,,"","",timestep,"" +2000000035,leaf mesophyll CO2 concentration,Pa,"",2018-08-23 17:55:36.782263,2018-08-23 17:55:36.782263,Cc,,,"","",Cc,"" +2000000041,"","",dvmdostem calibration variable,2020-04-11 15:51:41.050213,2020-04-11 15:51:41.050213,cmax,,,"","","",plant trait +2000000042,"","",dvmdostem calibration variable,2020-04-11 15:52:16.516105,2020-04-11 15:52:29.665782,nmax,,,"","","",plant trait +2000000043,"","",dvmdostem calibration variable,2020-04-11 15:54:32.201528,2020-04-11 15:54:32.201528,cfall_leaf,,,"","","",plant trait +2000000038,Surface incident shortwave radiation,W m-2,Surface incident shortwave radiation,2018-09-20 19:02:07.905307,2018-09-20 19:02:07.905307,SWdown,,,surface_downwelling_shortwave_flux_in_air,W m-2,SWdown,"" +2000000044,"","",dvmdostem calibration variable,2020-04-11 15:56:03.239211,2020-04-11 15:56:03.239211,cfall_stem,,,"","","",plant trait +2000000045,"","",dvmdostem calibration variable,2020-04-11 15:57:03.680339,2020-04-11 15:57:03.680339,cfall_root,,,"","","",plant trait +2000000046,"","",dvmdostem calibration variable,2020-04-11 15:58:16.173115,2020-04-11 15:58:16.173115,nfall_root,,,"","","",plant trait +2000000047,"","",dvmdostem calibration variable,2020-04-11 15:58:45.052392,2020-04-11 15:58:45.052392,nfall_stem,,,"","","",plant trait +2000000028,Labile nitrogen concentration,percent,DVM-DOS-TEM labile nitrogen pool concentration parameter,2017-11-30 20:03:22.889748,2017-11-30 20:03:22.889748,labncon,,,"","",labncon,plant trait +2000000015,extinction coeff for conversion from lai to fpc,"",dvm-dos-tem parameter: extinction coeff for conversion from lai to fpc,2017-11-17 12:46:42.244975,2017-11-17 12:46:42.244975,klai,,,"","",klai,"" +2000000025,Rate of increase in the parameter to the optimum,kJ mol-1,Ha gives the rate of exponential increase of the function below the optimum (and is analogous to parameter Ev in the Arrhenius function),2017-11-28 15:00:52.943381,2017-11-28 15:01:43.12302,Ha_Modified_Arrhenius_Vcmax,,,"","",Ha_Modified_Arrhenius_Vcmax,plant trait +2000000016,Fine root production percentage,percent,dvmdostem parameter controlling the percentage of fine root production at 30 cm depth,2017-11-17 12:53:46.717046,2017-11-17 12:59:38.058869,frprod_perc_30,,,"","",frprod_perc_30,plant trait +2000000026,Rate of decrease of the parameter from the optimum,kJ mol-1,Hd describes the rate of decrease of the function above the optimum,2017-11-28 15:02:33.114297,2017-11-28 15:02:48.937337,Hd_Modified_Arrhenius_Vcmax,,,"","",Hd_Modified_Arrhenius_Vcmax,plant trait +2000000032,Entropy term in the modified Arrhenius function,J mol-1 K-1,Entropy term in the modified Arrhenius function,2018-03-13 12:00:57.77328,2018-03-13 12:03:10.669157,deltaS_Vcmax,,,deltaS,J mol-1 K-1,deltaS_Vcmax,plant trait +2000000048,"","",dvmdostem calibration variable,2020-04-11 15:59:31.664216,2020-04-11 15:59:31.664216,nfall_leaf,,,"","","",plant trait +2000000033,Entropy term in the modified Arrhenius function,J mol-1 K-1,Entropy term in the modified Arrhenius function,2018-03-13 12:03:37.052076,2018-03-13 12:04:48.19407,deltaS_Jmax,,,deltaS,J mol-1 K-1,deltaS_Jmax,plant trait +2000000054,"","",dvmdostem calibration variable: soil microbial N immobilization,2020-04-13 15:34:03.160218,2020-04-13 15:34:16.668081,micbnup,,,"","","",ecosystem +2000000055,"","",dvmdostem calibration variable: litter C decomposition rate,2020-04-13 15:35:15.770192,2020-04-13 15:35:15.770192,kdcrawc,,,"","","",ecosystem +2000000049,"","",dvmdostem calibration variable: maintenance respiration,2020-04-11 16:05:18.27849,2020-04-11 16:05:18.27849,kra,,,"","","",plant trait +2000000056,"","",dvmdostem calibration variable,2020-04-13 15:35:55.006163,2020-04-13 15:35:55.006163,kdcsoma,,,"","","",ecosystem +2000000057,"","",dvmdostem calibration variable,2020-04-13 15:36:58.155525,2020-04-13 15:36:58.155525,kdcsompr,,,"","","",ecosystem +2000000050,"","","dvmdostem calibration variable: maintenance respiration, leaf",2020-04-11 16:06:07.814796,2020-04-18 01:18:58.805636,krb_leaf,,,"","","",plant trait +2000000009,Rate of increase in the parameter to the optimum,kJ mol-1,Ha gives the rate of exponential increase of the function below the optimum (and is analogous to parameter Ev in the Arrhenius function),2016-09-19 12:11:46.62096,2016-09-19 12:26:57.051525,Ha_Modified_Arrhenius_Jmax,,,"","","",plant trait +2000000010,Rate of decrease of the parameter from the optimum,kJ mol-1,Hd describes the rate of decrease of the function above the optimum,2016-09-19 12:14:12.597747,2016-09-19 12:27:18.757267,Hd_Modified_Arrhenius_Jmax,,,"","","",plant trait +2000000008,The activation energy for Jmax (Ej) derived from an Arrhenius model,kJ mol-1,"The activation energy for Jmax (Ej) derived from an Arrhenius model. This parameter is used to scale the value of Jmax at the measurement temperature to an estimated value at another temperature based on the exponential form of the Arrhenius model: f(Tk) = Jmax25*exp[(Ej*(Tk-298.15))/(298.15*R*Tk)]; where Tk is the leaf temperature in Kelvin, Jmax25 is the value of Jmax at 25 degC, and R is the ideal gas constant. When entered into BETY the Jmax value at 25 degC should be entered as a covariate. ",2016-09-16 21:36:47.70389,2016-09-16 21:40:11.64151,Ej_Arrhenius,,,"","","",plant trait +2000000027,The parameter that describes the curvature (smoothness) between light-limited and CO2 limited photosynthetic rate,untless,"The parameter that describes the curvature (smoothness) between light-limited and CO2 limited photosynthetic rate. Also known as the ""convexity"" of the light response. Originally described in Farqhuar & Wong (1984), An Empirical Model of Stomatal Conductance in equation A3 where they set convexity to 0.67 and then later described by Long and Hällgren 1993 and Bernacchi et al, 2003 in equations 2 and 7. Unitless",2017-11-30 12:56:13.481376,2018-04-17 17:47:50.574575,theta,,,convexity,"",theta,plant trait +2000000053,"","",dvmdostem calibration variable: NPP fraction for growth respiration,2020-04-11 16:08:21.846065,2020-04-11 16:08:21.846065,frg,,,"","","",plant trait +2000000058,"","",dvmdostem calibration variable,2020-04-13 15:37:28.787466,2020-04-13 15:37:28.787466,kdcsomcr,,,"","","",ecosystem +2000000052,"","","dvmdostem calibration variable: maintenance respiration, root",2020-04-11 16:07:27.352811,2020-04-18 01:19:13.213274,krb_root,,,"","","",plant trait +2000000018,initial LAI,m2 m-2,initial LAI,2017-11-17 13:02:42.423919,2017-11-17 13:02:42.423919,ilai,,,"",m2 m-2,ilai,plant trait +2000000019,rainfall interception,"",ircoef: rainfall interception,2017-11-17 13:06:41.942188,2017-11-17 13:06:41.942188,rainfall_interception,,,"","",rainfall_interception,plant trait +2000000020,snow interception,"",iscoef: snow interception,2017-11-17 13:07:16.306374,2017-11-17 13:07:16.306374,snow_interception,,,"","",snow_interception,plant trait +2000000021,ppfd50,umols m2 s-1,"",2017-11-17 13:10:29.675361,2017-11-17 13:10:29.675361,ppfd50,,,"","",ppfd50,plant trait +2000000022,vpd for fully open stomata,kPa,vpd_open: vpd (pa) for leaf stomata fully openness,2017-11-17 13:19:05.577781,2017-11-17 13:30:30.597792,vpd_open,,,"","",vpd_open,plant trait +2000000023,vpd for fully closed stomata,kPa,vpd_close: vpd (pa) for leaf stomata fully closure,2017-11-17 13:19:32.612318,2017-11-17 13:31:19.762421,vpd_close,,,"","",vpd_close,plant trait +2000000040,Minimum rate of stomatal conductance,kg m-2 s-1,"Otherwise known as ""g0"" or the intercept of the gs/A relationship. Also known as cuticular_conductance in the Ball-Berry model. This pertains to Medlyn et al 2011 and perhaps Leuning et al. 1995",2018-10-11 16:07:53.385578,2018-10-11 16:09:46.857222,minimum_stomatal_conductance,,,"",kg m-2 s-1,g0,plant trait +2000000017,Fine root production percentage,percent,dvmdostem parameter controlling the percentage of fine root production at 40 cm depth,2017-11-17 12:58:43.435309,2017-11-23 13:50:42.927809,frprod_perc_40,,,"","",frprod_perc_40,plant trait +2000000024,Fine root production percentage,percent,dvmdostem parameter controlling the percentage of fine root production at 50 cm depth ,2017-11-23 13:51:08.208015,2017-11-23 13:51:59.041619,frprod_perc_50,,,"","",frprod_perc_50,plant trait +2000000029,Fraction of absorbed light not used for photosynthesis,percent,Fraction of absorbed light not used for photosynthesis,2017-12-01 20:53:08.683109,2017-12-01 21:02:54.974167,f_frac,,,"","",f_frac,plant trait +2000000011,"","",plot name or number,2017-02-03 15:44:27.267557,2017-02-03 15:44:27.267557,Plot,,,"","","","" +2000000012,"","",subplot name or number,2017-02-03 15:44:51.062766,2017-02-03 15:44:51.062766,Subplot,,,"","","","" +2000000013,"","","",2017-02-03 16:05:36.849111,2017-02-03 16:05:36.849111,Tree_number,,,"","","","" +2000000030,Optimum temperature for Vcmax,degrees C,Optimum temperature for Vcmax in the modified Arrhenius temperature response function ,2018-03-12 16:45:12.394201,2018-03-12 16:45:12.394201,psnTOpt_Vcmax,,,"",Kelvin,psnTOpt_Vcmax,plant trait +2000000031,Optimum temperature for Jmax,degrees C,Optimum temperature for Jmax in the modified Arrhenius function,2018-03-12 16:45:55.994643,2018-03-12 16:46:26.492296,psnTOpt_Jmax,,,"",Kelvin,psnTOpt_Jmax,plant trait +5000000001,POSIX convention datetime variable,ymd_hms,Used for parsing a time stamp in data files,2016-06-28 16:47:25.178816,2016-06-28 17:41:57.919374,datetime,,,time,Days since 1700-01-01 00:00:00 UTC,"",model +5000000002,Soil Respiration,kg C m-2 s-1,mstmip standard name,2019-09-11 20:53:01.029715,2019-09-11 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--- a/tests/testthat/test-data.R +++ b/tests/testthat/test-data.R @@ -53,10 +53,17 @@ test_that("variables table loads correctly", { data("variables", package = "betydata") expect_s3_class(variables, "data.frame") - required_cols <- c("id", "name", "units") + required_cols <- c("id", "name", "units", "min", "max") expect_true(all(required_cols %in% names(variables))) }) +test_that("variables table has no infinite bound placeholders", { + data("variables", package = "betydata") + + expect_false(any(variables$min %in% c("-Infinity", "Infinity"))) + expect_false(any(variables$max %in% c("-Infinity", "Infinity"))) +}) + test_that("pfts table loads correctly", { data("pfts", package = "betydata")