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interpolation.py
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from collections.abc import Callable
from typing import Literal
import numpy as np
from parcels._typing import Mesh
__all__ = [] # type: ignore
def phi1D_lin(xsi: float) -> list[float]:
phi = [1 - xsi, xsi]
return phi
# fmt: off
def phi1D_quad(xsi: float) -> list[float]:
phi = [2*xsi**2-3*xsi+1,
-4*xsi**2+4*xsi,
2*xsi**2-xsi]
return phi
def phi2D_lin(eta: float, xsi: float) -> np.ndarray:
phi = np.column_stack([(1-xsi) * (1-eta),
xsi * (1-eta),
xsi * eta ,
(1-xsi) * eta ])
return phi
def dphidxsi3D_lin(zeta: float, eta: float, xsi: float) -> tuple[list[float], list[float], list[float]]:
dphidxsi = [ - (1-eta) * (1-zeta),
(1-eta) * (1-zeta),
( eta) * (1-zeta),
- ( eta) * (1-zeta),
- (1-eta) * ( zeta),
(1-eta) * ( zeta),
( eta) * ( zeta),
- ( eta) * ( zeta)]
dphideta = [ - (1-xsi) * (1-zeta),
- ( xsi) * (1-zeta),
( xsi) * (1-zeta),
(1-xsi) * (1-zeta),
- (1-xsi) * ( zeta),
- ( xsi) * ( zeta),
( xsi) * ( zeta),
(1-xsi) * ( zeta)]
dphidzet = [ - (1-xsi) * (1-eta),
- ( xsi) * (1-eta),
- ( xsi) * ( eta),
- (1-xsi) * ( eta),
(1-xsi) * (1-eta),
( xsi) * (1-eta),
( xsi) * ( eta),
(1-xsi) * ( eta)]
return dphidxsi, dphideta, dphidzet
def dxdxsi3D_lin(
hexa_z: list[float], hexa_y: list[float], hexa_x: list[float], zeta: float, eta: float, xsi: float, mesh: Mesh
) -> tuple[float, float, float, float, float, float, float, float, float]:
dphidxsi, dphideta, dphidzet = dphidxsi3D_lin(zeta, eta, xsi)
if mesh == 'spherical':
deg2m = 1852 * 60.
rad = np.pi / 180.
lat = (1-xsi) * (1-eta) * hexa_y[0] + \
xsi * (1-eta) * hexa_y[1] + \
xsi * eta * hexa_y[2] + \
(1-xsi) * eta * hexa_y[3]
jac_lon = deg2m * np.cos(rad * lat)
jac_lat = deg2m
else:
jac_lon = 1
jac_lat = 1
dxdxsi = np.dot(hexa_x, dphidxsi) * jac_lon
dxdeta = np.dot(hexa_x, dphideta) * jac_lon
dxdzet = np.dot(hexa_x, dphidzet) * jac_lon
dydxsi = np.dot(hexa_y, dphidxsi) * jac_lat
dydeta = np.dot(hexa_y, dphideta) * jac_lat
dydzet = np.dot(hexa_y, dphidzet) * jac_lat
dzdxsi = np.dot(hexa_z, dphidxsi)
dzdeta = np.dot(hexa_z, dphideta)
dzdzet = np.dot(hexa_z, dphidzet)
return dxdxsi, dxdeta, dxdzet, dydxsi, dydeta, dydzet, dzdxsi, dzdeta, dzdzet
def jacobian3D_lin(
hexa_z: list[float], hexa_y: list[float], hexa_x: list[float], zeta: float, eta: float, xsi: float, mesh: Mesh
) -> float:
dxdxsi, dxdeta, dxdzet, dydxsi, dydeta, dydzet, dzdxsi, dzdeta, dzdzet = dxdxsi3D_lin(hexa_z, hexa_y, hexa_x, zeta, eta, xsi, mesh)
jac = (
dxdxsi * (dydeta * dzdzet - dzdeta * dydzet)
- dxdeta * (dydxsi * dzdzet - dzdxsi * dydzet)
+ dxdzet * (dydxsi * dzdeta - dzdxsi * dydeta)
)
return jac
def jacobian3D_lin_face(
hexa_z: list[float],
hexa_y: list[float],
hexa_x: list[float],
zeta: float,
eta: float,
xsi: float,
orientation: Literal["zonal", "meridional", "vertical"],
mesh: Mesh,
) -> float:
dxdxsi, dxdeta, dxdzet, dydxsi, dydeta, dydzet, dzdxsi, dzdeta, dzdzet = dxdxsi3D_lin(hexa_z, hexa_y, hexa_x, zeta, eta, xsi, mesh)
if orientation == 'zonal':
j = [dydeta*dzdzet-dydzet*dzdeta,
-dxdeta*dzdzet+dxdzet*dzdeta,
dxdeta*dydzet-dxdzet*dydeta]
elif orientation == 'meridional':
j = [dydxsi*dzdzet-dydzet*dzdxsi,
-dxdxsi*dzdzet+dxdzet*dzdxsi,
dxdxsi*dydzet-dxdzet*dydxsi]
elif orientation == 'vertical':
j = [dydxsi*dzdeta-dydeta*dzdxsi,
-dxdxsi*dzdeta+dxdeta*dzdxsi,
dxdxsi*dydeta-dxdeta*dydxsi]
jac = np.sqrt(j[0]**2+j[1]**2+j[2]**2)
return jac
def dphidxsi2D_lin(eta: float, xsi: float) -> tuple[list[float], list[float]]:
dphidxsi = [-(1-eta),
1-eta,
eta,
- eta]
dphideta = [-(1-xsi),
- xsi,
xsi,
1-xsi]
return dphideta, dphidxsi
# fmt: on
def dxdxsi2D_lin(
quad_y,
quad_x,
eta: float,
xsi: float,
):
dphideta, dphidxsi = dphidxsi2D_lin(eta, xsi)
dxdxsi = np.dot(quad_x, dphidxsi)
dxdeta = np.dot(quad_x, dphideta)
dydxsi = np.dot(quad_y, dphidxsi)
dydeta = np.dot(quad_y, dphideta)
return dxdxsi, dxdeta, dydxsi, dydeta
def jacobian2D_lin(quad_y, quad_x, eta: float, xsi: float):
dxdxsi, dxdeta, dydxsi, dydeta = dxdxsi2D_lin(quad_y, quad_x, eta, xsi)
jac = dxdxsi * dydeta - dxdeta * dydxsi
return jac
def interpolate(phi: Callable[[float], list[float]], f: list[float], xsi: float) -> float:
return np.dot(phi(xsi), f)
def _geodetic_distance(lat1: float, lat2: float, lon1: float, lon2: float, mesh: Mesh, lat: float) -> float:
if mesh == "spherical":
rad = np.pi / 180.0
deg2m = 1852 * 60.0
return np.sqrt(((lon2 - lon1) * deg2m * np.cos(rad * lat)) ** 2 + ((lat2 - lat1) * deg2m) ** 2)
else:
return np.sqrt((lon2 - lon1) ** 2 + (lat2 - lat1) ** 2)
def _compute_jacobian_determinant(py: np.ndarray, px: np.ndarray, eta: float, xsi: float) -> float:
dphidxsi = np.column_stack([eta - 1, 1 - eta, eta, -eta])
dphideta = np.column_stack([xsi - 1, -xsi, xsi, 1 - xsi])
dxdxsi_diag = np.einsum("ij,ji->i", dphidxsi, px)
dxdeta_diag = np.einsum("ij,ji->i", dphideta, px)
dydxsi_diag = np.einsum("ij,ji->i", dphidxsi, py)
dydeta_diag = np.einsum("ij,ji->i", dphideta, py)
jac_diag = dxdxsi_diag * dydeta_diag - dxdeta_diag * dydxsi_diag
return jac_diag