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Author: genscale-admin

README

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+PLAST - Java project
+====================
+
+This project contains:
+----------------------
+
+1. a sample Java application to illustrate the use of PLAST native binary from a Java
+   application;
+   
+2. some Fasta sample files to use as query and subject files to run PLAST comparison jobs; 
+
+3. PLAST pre-compiled native libraries for Linux, MacOS and Windows;
+
+4. the "plast.jar" library required to develop Java PLAST-based applications;
+
+5. an Ant "build.xml" file to handle the project; type "ant help" in your terminal for more information.
+
+6. ".classpath" and ".project" files to import this project into Eclipse IDE. 
+
+
+Requirements
+------------
+
+1. Oracle Java SDK 1.7 or above; avoid using OpenJDK, etc.
+2. Apache Ant 1.9.1 or above.
+
+
+Testing software
+----------------
+
+This project is self contained, so you can easily test it on the command-line. Using a terminal, type in the following commands:
+
+    ant cmp
+    ant run
+
+
+About PLAST binary
+------------------
+
+Inria/Genscale Team provide PLAST binaries as follows:
+
++ MacOSX PLAST binary: created on OS 10.7.5 (gcc 4.2) 
+
++ Linux PLAST binary: created on CentOS 6.3 (gcc 4.2.1 ; kernel 2.6.32-279.el6.x86_64 ; GLIBCXX_3.4.13 ; libstdc++.so.6)  
+
++ Windows PLAST binary: created on Windows 7.1 Pro 64bits (MinGW-64/gcc 5.2)
+
+Provided PLAST binaries should work on more recent releases of these OS. However, depending on your system, the provided binaries may not work. In such a case, please download source code and compile it on your system. 
+
+Compiling PLAST: [http://plast.gforge.inria.fr/docs/cpp/index.html#compile_plast](http://plast.gforge.inria.fr/docs/cpp/index.html#compile_plast)
+
+
+Developer documentation
+-----------------------
+
+See [https://project.inria.fr/plast/developer-guide/](https://project.inria.fr/plast/developer-guide/) for general documentation.
+
+Plast Java API: [http://plast.gforge.inria.fr/docs/java/](http://plast.gforge.inria.fr/docs/java/).
+
+License
+-------
+
+PLAST is free software; you can redistribute it and/or modify it under the Affero GPL v3 
+license. See http://www.gnu.org/licenses/agpl-3.0.en.html
+
+About Github mirror
+-------------------
+
+PLAST project resides at two locations:
+
+* [Inria Forge](https://gforge.inria.fr/): the official git repository
+* Github: this is a mirror of the Inria Forge repository
+
+The Github repository is auto-updated from Inria GForge. So all commits have to be done by authorized users/developers on the Inria Forge. Otherwise, consider using "Github/pull request" for any update to be done on PLAST.