Ignore perturbed system config options on restart.

lohedges · lohedges · commit 7255e0643779 · 2026-02-17T14:52:40.000Z
diff --git a/src/somd2/runner/_base.py b/src/somd2/runner/_base.py
@@ -1338,6 +1338,8 @@ def _compare_configs(config1, config2):
             "energy_frequency",
             "frame_frequency",
             "save_velocities",
+            "perturbed_system",
+            "perturbed_system_file",
             "platform",
             "max_threads",
             "max_gpus",
