TF2.4_IVIM-MRI_CodeCollection/tests/IVIMmodels/unit_tests/algorithms.json at 32281c2b3002e994adf9d015572f8f787729995c · OSIPI/TF2.4_IVIM-MRI_CodeCollection · GitHub

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{
    "algorithms": [
        "Super_IVIM_DC",
        "IVIM_NEToptim",
        "TCML_TechnionIIT_lsqlm",
        "TCML_TechnionIIT_lsqtrf",
        "TCML_TechnionIIT_lsqBOBYQA",
        "TCML_TechnionIIT_lsq_sls_lm",
        "TCML_TechnionIIT_lsq_sls_trf",
        "TCML_TechnionIIT_lsq_sls_BOBYQA",
        "TCML_TechnionIIT_SLS",
        "ASD_MemorialSloanKettering_QAMPER_IVIM",
        "ETP_SRI_LinearFitting",
        "IAR_LU_biexp",
        "IAR_LU_modified_mix",
        "IAR_LU_modified_topopro",
        "IAR_LU_segmented_2step",
        "IAR_LU_segmented_3step",
        "IAR_LU_subtracted",
        "OGC_AmsterdamUMC_Bayesian_biexp",
        "OGC_AmsterdamUMC_biexp_segmented",
        "OGC_AmsterdamUMC_biexp",
        "PV_MUMC_biexp",
        "PvH_KB_NKI_IVIMfit",
        "OJ_GU_seg",
        "OJ_GU_segMATLAB",
        "OJ_GU_bayesMATLAB",
        "TF_reference_IVIMfit"
    ],
    "IVIM_NEToptim": {
        "deep_learning": true,
        "n":3000000
    },
    "Super_IVIM_DC": {
        "deep_learning": true
    },
    "ASD_MemorialSloanKettering_QAMPER_IVIM": {
        "requires_matlab": true
    },
    "OJ_GU_segMATLAB": {
        "requires_matlab": true
    },
    "OJ_GU_bayesMATLAB": {
        "requires_matlab": true
    },
    "IAR_LU_biexp": {
        "fail_first_time": true
    },
    "ETP_SRI_LinearFitting": {
        "options": {
            "thresholds": [500]
        },
        "tolerances": {
            "rtol": {
                "f": 5,
                "D": 5,
                "Dp": 25
            },
            "atol": {
                "f": 0,
                "D": 0,
                "Dp": 0
            },
            "dynamic_rtol": {
                "offset": 0.001,
                "noise": 200,
                "f": 2,
                "D": 1,
                "Dp": 3
            },
            "dynamic_atol": {
                "offset": 5e-2,
                "noise": 10,
                "f": 1,
                "D": 0.001,
                "Dp": 2
            }
        },
        "test_bounds": false
    }
}