pyproject.toml

[build-system]
requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.1.0"]
build-backend = "poetry_dynamic_versioning.backend"

[tool.poetry]
name = "nnpdf"
version = "0.0.0"
description = "An open-source machine learning framework for global analyses of parton distributions."
readme = "README.md"
authors = [
    "NNPDF Collaboration"
]
classifiers = [
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Topic :: Scientific/Engineering",
    "Topic :: Scientific/Engineering :: Physics",
    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
]
license = "GPL-3.0-or-later"
repository = "https://github.com/NNPDF/nnpdf"
# Packages installed together within the nnpdf metapackage
packages = [
    { include = "n3fit", from = "n3fit/src" },
    { include = "evolven3fit", from = "n3fit/src" },
    { include = "validphys", from = "validphys2/src" },
    { include = "nnpdf_data", from = "nnpdf_data"},
]
# Data files
include = [
    # The default profile is included together with the validphys package
    { path ="validphys2/src/validphys/nnprofile_default.yaml",format = ["sdist", "wheel"] },
    # The version file is ignored by git so it needs to be explicitly included
    { path ="validphys2/src/validphys/_version.py", format = ["sdist", "wheel"] },
    { path ="nnpdf_data/nnpdf_data/_version.py", format = ["sdist", "wheel"] }
]

[tool.poetry.scripts]
n3fit = "n3fit.scripts.n3fit_exec:main"
validphys = "validphys.scripts.main:main"
# Fitting scripts
evolven3fit = "n3fit.scripts.evolven3fit:main"
vp-setupfit = "n3fit.scripts.vp_setupfit:main"
postfit = "validphys.scripts.postfit:main"
# validphys helpers and scripts
vp-upload = "validphys.scripts.vp_upload:main"
wiki-upload = "validphys.scripts.wiki_upload:main"
vp-get = "validphys.scripts.vp_get:main"
vp-comparefits = "validphys.scripts.vp_comparefits:main"
vp-fitrename = "validphys.scripts.vp_fitrename:main"
vp-checktheory = "validphys.scripts.vp_checktheory:main"
vp-pdfrename = "validphys.scripts.vp_pdfrename:main"
vp-pdffromreplicas = "validphys.scripts.vp_pdffromreplicas:main"
vp-list = "validphys.scripts.vp_list:main"
vp-nextfitruncard = "validphys.scripts.vp_nextfitruncard:main"
vp-hyperoptplot = "validphys.scripts.vp_hyperoptplot:main"
vp-deltachi2 = "validphys.scripts.vp_deltachi2:main"

[tool.poetry.dependencies]
# Generic dependencies (i.e., validphys)
python = ">=3.9"
matplotlib = "^3.9"
pineappl = "^1.0.0"
# TODO: make the code compatible with pandas 3
pandas = "*"
numpy = "*"
"ruamel.yaml" = {version = ">=0.19.1", extras=["oldlibyaml"]}
validobj = "*"
prompt_toolkit = "*"
reportengine = ">=0.32"
packaging = "*"
# Fit
psutil = "*"
tensorflow = "*"
keras = "^3.1"
tensorboard = "*" # keras requires tensorboard but some versions are missing the dependency
eko = "^0.15.1"
joblib = "*"
seaborn = "*"
# Hyperopt
hyperopt = {version = "*", optional = true}
# hyperopt needs setuptools pinned to < 82 due to pkg resources
setuptools = {version = "<82", optional = true}
# LHAPDF installation for debugging purposes
# a3b2bbc3ced97675ac3a71df45f55ba = "*"
# Optional dependencies
# tests
pytest = {version = ">=7", optional = true}
pytest-mpl = {version = "*", optional = true}
pytest-cov = {version = ">=6", optional = true}
hypothesis = {version = "*", optional = true}
# docs
sphinxcontrib-bibtex = {version = "*", optional = true}
sphinx_rtd_theme = {version = "*", optional = true}
sphinx = {version = "^6.2", optional = true}
tabulate = {version = "*", optional = true}
# qed
fiatlux = {version = "*", optional = true}
# without lhapdf
pdfflow = {version = "^1.2.1", optional = true}
lhapdf-management = {version = "^0.6", optional = true}
# torch
torch = {version = "*", optional = true}
# jax
jax = {version = "*", optional = true}
# parallel hyperopt
pymongo = {version = "<4", optional = true}

# Optional dependencies
[tool.poetry.extras]
tests = ["pytest", "pytest-mpl", "hypothesis", "pytest-cov"]
docs = ["sphinxcontrib-bibtex", "sphinx-rtd-theme", "sphinx", "tabulate"]
qed = ["fiatlux"]
nolha = ["pdfflow", "lhapdf-management"]
torch = ["torch"]
jax = ["jax"]
hyperopt = ["hyperopt", "setuptools"]
parallelhyperopt = ["pymongo", "hyperopt", "setuptools"]

[tool.poetry-dynamic-versioning]
enable = true
vcs = "git"
stype = "semver"
dirty = true
pattern = "default-unprefixed" # we don't use v in the tags
ignore-untracked = true

[tool.poetry-dynamic-versioning.files."validphys2/src/validphys/_version.py"]
persistent-substitution = true
initial-content = """
__version__ = "0.0.0"
"""

# When installed toghether, make sure the validphs and nnpdf_data versions are written at the same time
[tool.poetry-dynamic-versioning.files."nnpdf_data/nnpdf_data/_version.py"]
persistent-substitution = true
initial-content = """
__version__ = "0.0.0"
"""

[tool.poetry-dynamic-versioning.substitution]
files = ["validphys2/src/validphys/_version.py", "nnpdf_data/nnpdf_data/_version.py"]

[tool.black]
line-length = 100
skip-string-normalization = true
skip-magic-trailing-comma = true

[tool.isort]
atomic = true
line_length = 100
profile = "black" # https://black.readthedocs.io/en/stable/guides/using_black_with_other_tools.html#custom-configuration
skip_gitignore = true
known_first_party = ["validphys", "eko", "n3fit", "nnpdf_data", "reportengine"]
force_sort_within_sections = true

[tool.pytest.ini_options]
minversion = 7
addopts = ["--disable-warnings", "--strict-config"]
xfail_strict = true
log_cli_level = "WARNING"

[tool.coverage.run]
omit = [
    "*/local*",
    "*/rule*",
    "*/nnpdf_data/commondata/*",
    "*/nnpdf_data/filter_utils/*",
    "*test_*.py"
]
[tool.coverage.paths]
cipaths = [ # In order to combine files from both the ubuntu and macos runners
    "./", # CI working directory
    "/Users/runner/work/nnpdf/nnpdf",
    "/home/runner/work/nnpdf/nnpdf"
]

[tool.repo-review]
select = ["PY", "GH", "PP", "PC"]

[tool.repo-review.ignore]
"PY004" = "Using doc/ as folder"
"PY005" = "Tests are in <package>/src/*/tests"
"PY007" = ""
"PP303" = ""
"PP307" = "False positive"
"PP308" = ""
"GH200" = ""
"PC190" = ""
"PC160" = ""
"PC901" = "No autocommit coming from the CI in pre-commit is set"