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Update Java version
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@@ -650,9 +650,10 @@ module load bedtools/2.17.0
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#export PATH=${BEDTOOLS}:${PATH}
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# Do we have Java installed?
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module load java/jdk1.8.0_45
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#module load java/jdk1.8.0_45
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#JAVA=
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#export PATH=${JAVA}:${PATH}
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module load java/openjdk-8_202
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# What is the full file path for the GATK jar file?
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GATK_JAR=/panfs/roc/groups/9/morrellp/public/Software/GATK_ML_3.8.0/GenomeAnalysisTK.jar

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