GatingTree/NAMESPACE at main · MonoTockyLab/GatingTree · GitHub

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# Generated by roxygen2: do not edit by hand

S3method(show,FlowObject)
export(AnalyzeNodeOverlaps)
export(CreateFlowObject)
export(DefineNegatives)
export(ExtractGatingTree)
export(ExtractTopNodes)
export(GatingTreeRandomForest)
export(GatingTreeToDF)
export(LogData)
export(NormAF)
export(PlotDefineNegatives)
export(PlotDeltaEnrichment)
export(PlotDeltaEnrichmentPrunedTree)
export(PlotNodeScatterPlot)
export(PlotNormAF)
export(PruneGatingTree)
export(SampleDef)
export(convertGatingTreeToGraph)
export(convertToDataTree)
export(convert_to_diagrammer)
export(createGatingTreeObject)
export(export_negative_gate_def)
export(extractNodes)
export(findNodeByPath)
export(flowObject)
export(getNode)
export(import_negative_gate_def)
export(plotFlow2D)
export(predictGatingTreeRandomForest)
export(showSampleDef)
exportClasses(FlowObject)
exportMethods(initialize)
import(grDevices)
import(graphics)
import(methods)
import(stats)
import(utils)
importFrom(DiagrammeR,add_edge)
importFrom(DiagrammeR,add_node)
importFrom(DiagrammeR,create_graph)
importFrom(DiagrammeR,render_graph)
importFrom(data.tree,Node)
importFrom(dplyr,"%>%")
importFrom(dplyr,across)
importFrom(dplyr,coalesce)
importFrom(dplyr,count)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,summarise)
importFrom(dplyr,where)
importFrom(dunn.test,dunn.test)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_jitter)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,ylim)
importFrom(gplots,heatmap.2)
importFrom(grDevices,dev.new)
importFrom(grDevices,topo.colors)
importFrom(graphics,barplot)
importFrom(graphics,par)
importFrom(gridExtra,grid.arrange)
importFrom(methods,setClass)
importFrom(methods,setMethod)
importFrom(randomForest,importance)
importFrom(randomForest,randomForest)
importFrom(rlang,sym)
importFrom(stats,as.hclust)
importFrom(stats,cutree)
importFrom(stats,setNames)
importFrom(stats,wilcox.test)
importFrom(utils,select.list)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)