Merge pull request #156 from Fxe/dev

mspredict/fixed pre commit

Author: Fxe

.github/workflows/pre-commit.yml

@@ -17,11 +17,13 @@ jobs:
         os: [ubuntu-latest]
         python-version: ['3.9', '3.10', '3.11']
     steps:
-      - uses: actions/checkout@v2
-      - uses: actions/setup-python@v3
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
+          cache: pip
+
       - name: Set file mode to false
         run: |
           git config core.filemode false
-      - uses: pre-commit/action@v2.0.3
+      - uses: pre-commit/action@v3.0.1

examples/Model Reconstruction/Index.ipynb

@@ -58,7 +58,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -72,7 +72,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.11.0"
   }
  },
  "nbformat": 4,

examples/Model Reconstruction/build_metabolic_model.ipynb

@@ -969,7 +969,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -983,7 +983,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.10"
+   "version": "3.11.0"
   }
  },
  "nbformat": 4,