From 076f90de76cb0e27d9e53fbcff2970c3206725c9 Mon Sep 17 00:00:00 2001 From: Taksh Date: Sun, 19 Jul 2026 11:54:23 +0300 Subject: [PATCH] fix: low_memory=False on mimic-iv sqlite read_csv --- mimic-iv/buildmimic/sqlite/import.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/mimic-iv/buildmimic/sqlite/import.py b/mimic-iv/buildmimic/sqlite/import.py index 68d43647..31b880c4 100644 --- a/mimic-iv/buildmimic/sqlite/import.py +++ b/mimic-iv/buildmimic/sqlite/import.py @@ -110,7 +110,7 @@ def main(): if args.limit > 0: for f in data_files: if 'patients' in f.name: - pt = pd.read_csv(f) + pt = pd.read_csv(f, low_memory=False) break if pt is None: raise FileNotFoundError('Unable to find a patients file in current folder.') @@ -158,7 +158,7 @@ def main(): tablename = tablenames[i] print("Starting processing {}".format(tablename), end='.. ') if os.path.getsize(f) < THRESHOLD_SIZE: - df = pd.read_csv(f, dtype=mimic_dtypes) + df = pd.read_csv(f, dtype=mimic_dtypes, low_memory=False) df = process_dataframe(df, subjects=subjects) df.to_sql(tablename, connection, index=False) row_counts[tablename] += len(df)