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colin-combecolin-combe
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min & max stoichiometry labels
Merge pull request #212 from colin-combe/master
2 parents b3a4327 + dabf37d commit 8dae8d4

16 files changed

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‎data/CPX-37.json‎

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‎data/CPX-5602.json‎

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{
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"data": [
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{
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"object": "interactor",
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"id": "uniprotkb_P27918",
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"sequence": "MITEGAQAPRLLLPPLLLLLTLPATGSDPVLCFTQYEESSGKCKGLLGGGVSVEDCCLNTAFAYQKRSGGLCQPCRSPRWSLWSTWAPCSVTCSEGSQLRYRRCVGWNGQCSGKVAPGTLEWQLQACEDQQCCPEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQQVCPTHGAWATWGPWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCPVDGEWDSWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSMVEGQGEKNVTFWGRPLPRCEELQGQKLVVEEKRPCLHVPACKDPEEEEL",
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"type": {
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"id": "MI:0326",
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"name": "protein"
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},
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"organism": {
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"taxid": "9606",
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"common": "human",
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"scientific": "Homo sapiens"
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},
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"identifier": {
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"db": "uniprotkb",
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"id": "P27918"
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},
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"label": "CFP"
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},
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{
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"object": "interactor",
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"id": "uniprotkb_P00751-PRO_0000027547",
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"sequence": "KIVLDPSGSMNIYLVLDGSDSIGASNFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDEDLGFL",
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"type": {
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"id": "MI:0326",
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"name": "protein"
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},
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"organism": {
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"taxid": "9606",
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"common": "human",
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"scientific": "Homo sapiens"
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},
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"identifier": {
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"db": "uniprotkb",
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"id": "P00751-PRO_0000027547"
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},
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"label": "P00751-PRO_0000027547"
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},
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{
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"object": "interactor",
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"id": "uniprotkb_P01024-PRO_0000005908",
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"sequence": "SPMYSIITPNILRLESEETMVLEAHDAQGDVPVTVTVHDFPGKKLVLSSEKTVLTPATNHMGNVTFTIPANREFKSEKGRNKFVTVQATFGTQVVEKVVLVSLQSGYLFIQTDKTIYTPGSTVLYRIFTVNHKLLPVGRTVMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRAYYENSPQQVFSTEFEVKEYVLPSFEVIVEPTEKFYYIYNEKGLEVTITARFLYGKKVEGTAFVIFGIQDGEQRISLPESLKRIPIEDGSGEVVLSRKVLLDGVQNPRAEDLVGKSLYVSATVILHSGSDMVQAERSGIPIVTSPYQIHFTKTPKYFKPGMPFDLMVFVTNPDGSPAYRVPVAVQGEDTVQSLTQGDGVAKLSINTHPSQKPLSITVRTKKQELSEAEQATRTMQALPYSTVGNSNNYLHLSVLRTELRPGETLNVNFLLRMDRAHEAKIRYYTYLIMNKGRLLKAGRQVREPGQDLVVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDVKDSCVGSLVVKSGQSEDRQPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIWDVVEKADIGCTPGSGKDYAGVFSDAGLTFTSSSGQQTAQRAELQCPQPAA",
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"type": {
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"id": "MI:0326",
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"name": "protein"
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},
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"organism": {
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"taxid": "9606",
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"common": "human",
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"scientific": "Homo sapiens"
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},
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"identifier": {
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"db": "uniprotkb",
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"id": "P01024-PRO_0000005908"
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},
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"label": "P01024-PRO_0000005908"
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},
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{
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"object": "interactor",
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"id": "uniprotkb_P01024-PRO_0000005911",
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"sequence": "SNLDEDIIAEENIVSRSEFPESWLWNVEDLKEPPKNGISTKLMNIFLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQTVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYNLEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKSDDKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLMWGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN",
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"type": {
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"id": "MI:0326",
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"name": "protein"
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},
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"organism": {
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"taxid": "9606",
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"common": "human",
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"scientific": "Homo sapiens"
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},
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"identifier": {
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"db": "uniprotkb",
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"id": "P01024-PRO_0000005911"
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},
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"label": "P01024-PRO_0000005911"
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},
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{
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"object": "interaction",
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"id": "complex portal_CPX-973",
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"interactionType": {
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"id": "MI:0915",
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"name": "physical association"
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},
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"complexType": {
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"id": "MI:1302",
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"name": "stable complex"
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},
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"evidenceType": {
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"id": "ECO:0000353",
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"name": "physical interaction evidence used in manual assertion"
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},
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"organism": {
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"taxid": "9606",
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"common": "human",
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"scientific": "Homo sapiens"
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},
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"identifiers": [
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{
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"db": "matrixdb",
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"id": "MULT_84_human"
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},
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{
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"db": "wwpdb",
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"id": "5fo7"
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},
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{
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"db": "wwpdb",
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"id": "3g6j"
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},
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{
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"db": "reactome",
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"id": "R-HSA-166832"
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},
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{
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"db": "complex portal",
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"id": "CPX-973"
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},
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{
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"db": "intact",
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"id": "EBI-12735745"
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}
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],
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"participants": [
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{
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"id": "1",
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"interactorRef": "uniprotkb_P01024-PRO_0000005908",
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"stoichiometry": "1",
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"bioRole": {
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"id": "MI:0499",
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"name": "unspecified role"
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},
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"features": [
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{
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"id": "2",
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"name": "C3b alpha(prime) chain binding region",
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"category": "bindingSites",
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"type": {
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"id": "MI:0117",
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"name": "binding-associated region"
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},
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"sequenceData": [
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{
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"pos": "?-?",
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"interactorRef": "uniprotkb_P01024-PRO_0000005908",
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"participantRef": "1"
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}
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],
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"linkedFeatures": [
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"3"
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]
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}
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]
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},
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{
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"id": "4",
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"interactorRef": "uniprotkb_P01024-PRO_0000005911",
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"stoichiometry": "1",
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"bioRole": {
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"id": "MI:0499",
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"name": "unspecified role"
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},
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"features": [
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{
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"id": "3",
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"name": "C3 beta chain binding region",
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"category": "bindingSites",
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"type": {
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"id": "MI:0117",
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"name": "binding-associated region"
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},
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"sequenceData": [
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{
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"pos": "?-?",
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"interactorRef": "uniprotkb_P01024-PRO_0000005911",
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"participantRef": "4"
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}
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],
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"linkedFeatures": [
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"2"
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]
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}
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]
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}
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]
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},
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{
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"object": "interaction",
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"id": "complex portal_CPX-5601",
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"interactionType": {
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"id": "MI:0915",
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"name": "physical association"
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},
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"complexType": {
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"id": "MI:1302",
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"name": "stable complex"
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},
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"evidenceType": {
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"id": "ECO:0005547",
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"name": "biological system reconstruction evidence based on inference from background scientific knowledge used in manual assertion"
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},
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"organism": {
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"taxid": "9606",
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"common": "human",
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"scientific": "Homo sapiens"
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},
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"identifiers": [
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{
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"db": "reactome",
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"id": "R-HSA-173749"
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},
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{
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"db": "complex portal",
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"id": "CPX-5601"
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},
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{
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"db": "intenz",
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"id": "3.4.21.47"
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},
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{
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"db": "intact",
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"id": "EBI-25436732"
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}
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],
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"participants": [
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{
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"id": "5",
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"interactorRef": "uniprotkb_P00751-PRO_0000027547",
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"stoichiometry": "1",
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"bioRole": {
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"id": "MI:0501",
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"name": "enzyme"
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}
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},
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{
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"id": "6",
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"interactorRef": "complex portal_CPX-973",
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"stoichiometry": "1",
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"bioRole": {
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"id": "MI:0499",
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"name": "unspecified role"
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}
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}
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]
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},
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{
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"object": "interaction",
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"id": "complex portal_CPX-5602",
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"interactionType": {
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"id": "MI:0915",
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"name": "physical association"
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},
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"complexType": {
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"id": "MI:1302",
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"name": "stable complex"
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},
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"evidenceType": {
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"id": "ECO:0005547",
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"name": "biological system reconstruction evidence based on inference from background scientific knowledge used in manual assertion"
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},
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"organism": {
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"taxid": "9606",
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"common": "human",
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"scientific": "Homo sapiens"
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},
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"identifiers": [
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{
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"db": "complex portal",
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"id": "CPX-5602"
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},
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{
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"db": "reactome",
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"id": "R-HSA-173752"
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},
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{
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"db": "intenz",
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"id": "3.4.21.47"
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},
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{
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"db": "intact",
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"id": "EBI-25436774"
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}
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],
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"participants": [
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{
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"id": "7",
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"interactorRef": "uniprotkb_P27918",
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"stoichiometry": "2",
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"bioRole": {
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"id": "MI:0499",
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"name": "unspecified role"
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}
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},
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{
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"id": "8",
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"interactorRef": "complex portal_CPX-5601",
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"minStoichiometry": "1",
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"maxStoichiometry": "5",
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"bioRole": {
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"id": "MI:0501",
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"name": "enzyme"
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}
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}
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]
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}
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]
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}

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