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add guidelines subject ID needs to have a letter
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docs/prepare_data.md

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@@ -4,11 +4,13 @@ The MELD pipeline relies on the MRI data to be organised in the MELD or BIDS for
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If you are preparing the data for the harmonisation step, you will also need to prepare the demographic information.
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## Prepare the MRI data (Mandatory)
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## **Prepare the MRI data (Mandatory)**
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In the 'input' folder where your meld data has/is going to be stored, create a folder for each patient with the ID of the subject.
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### MELD format
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### **MELD format**
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Chose a subject ID: Please ensure that the subject ID is not just a number. For example, if your id is `0001`, ensure to add a letter, such as `P0001`
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In each subject folder, create a T1 and FLAIR folder.
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![example](https://raw.githubusercontent.com//MELDProject/meld_graph/main/docs/images/input_structure_meld_format.png)
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### BIDS format
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### **BIDS format**
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The MELD pipeline now accept BIDS format as input data. For more information about BIDS format, please refers to their [instructions](https://bids.neuroimaging.io/)
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"BIDSVersion": "1.0.2"}
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```
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## Prepare the demographic information (required only to compute the harmonisation parameters)
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## **Prepare the demographic information (required only to compute the harmonisation parameters)**
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To compute the harmonisation parameters, you will need to provide a couple of information about the subjects into a csv file.
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- Age at preoperative: The age of the subject at the time of the preoperative T1 scan (in years)
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- Sex: 'male' if the subject is a male or 'female' if the subject is a female
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### Warning
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### **Warning**
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- please ensure the column names are unchanged and completed with the appropriate values, otherwise the pipeline will fail.
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- please make sure you add the appropriate age and sex of the patients. Adding dummy information can lead to suboptimal harmonisation.
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- please ensure that there is non-zero variance in the age of your subjects. Similar age for all subjects will lead to harmonisation failure. If your patients have the same age, please add randomly +- 0.01 to all age to introduce variance.
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## FAQs
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## **FAQs**
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Please see our [FAQ page](https://meld-graph.readthedocs.io/en/latest/FAQs.html) for common questions about data preparation

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