HSPsquared/environment_dev.yml at 12dc1d54640002f03ca8f10229bc6b7aaeb64499 · LimnoTech/HSPsquared · GitHub

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name: hsp2_py38_dev
channels:
  - conda-forge
  - nodefaults

dependencies:
  # Running HSP2
  - python =3.8*
  - scipy  # Scipy also installs numpy
  - pandas  # Pandas installs most scientific Python modules, such as Numpy, etc.
  - numba
  - pytables >=3.6.1  # Installs HDF5 v1.10.6
  - h5py >=3.1        # Installs HDF5 v1.10.6
  - dask
  - networkx  # used in HSP2tools/graph.py.

  # Interactivity & Visualization
  - jupyterlab >=3.0.12
  - ipywidgets
  # - texlive-core  # to export notebooks to PDF. https://nbconvert.readthedocs.io/en/latest/install.html#installing-tex
  - matplotlib

  # Dev tools (optional)
  # - python-language-server
  - jupyter-lsp-python  # Includes both the server extension (jupyter-lsp) and pyls third-party server (python-language-server)
  - jupyterlab-lsp # Docs at https://github.com/krassowski/jupyterlab-lsp

  # package management
  - conda
  - conda-build

  # Optional extension dependencies for JupyterLab
  # - nodejs  # required for many extensions
  # - ipympl  # jupyter-matplotlib, https://github.com/matplotlib/ipympl
  # - qgrid  # https://github.com/quantopian/qgrid

  # PIP install requirements only if it is not  possible with conda
  # https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#using-pip-in-an-environment
  - pip
  - pip:
    - lckr-jupyterlab-variableinspector  # https://github.com/lckr/jupyterlab-variableInspector
    # jupyterlab_hdf is not yet compatible with jupyterlab >3.0, but it will soon.
      # See https://github.com/jupyterlab/jupyterlab-hdf5/issues/42#issuecomment-801786628
    # - jupyterlab_hdf  # https://github.com/jupyterlab/jupyterlab-hdf5
    # - hdf5plugin  # https://github.com/jupyterlab/jupyterlab-hdf5#compression-filters