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1 | | -# SignalData |
2 | | - |
3 | | -## Basic Setup ## |
4 | | - |
5 | | -1. Create a LabKey Assay Project/Folder |
6 | | - 1. Hover over the Project or Folder menu, and click **Create Project** or **Create Subfolder**. |
7 | | - 1. Provide a Name and select type **Assay**. |
8 | | - 1. Click **Next**. |
9 | | - 1. Set permissions (optional) and click **Next**. |
10 | | - 1. Click **Finish**. |
11 | | -1. Create a Signal Data Assay Design |
12 | | - 1. In the **Assay List** web part, click **New Assay Design**. |
13 | | - 1. On the New Assay Design page, select **Signal Data** as the assay type. |
14 | | - 1. Click **Next**. |
15 | | - 1. Name is the only required field. (Design default values should work fine.) |
16 | | - 1. Click the **Save & Close** button. |
17 | | - |
18 | | -## Manual Import of Signal Data Results ## |
19 | | - |
20 | | -Importing data is a two step process: |
21 | | - |
22 | | -1. Upload the metadata file. (An example metadata file is available at: https://github.com/LabKey/signalData/blob/develop/test/sampledata/signaldata/RunsMetadata/datafiles.tsv) |
23 | | -1. Drag and drop the data files (Example data files are available at: https://github.com/LabKey/signalData/tree/develop/test/sampledata/signaldata/SignalDataAssayData/TestRun001) |
24 | | - |
25 | | -### Metadata Upload |
26 | | - |
27 | | -1. Go to the folder where you wish to upload results. |
28 | | -1. Add the **Signal Data Upload** webpart. |
29 | | -1. Confirm that **File** is selected, and click **Upload TXT, TSV, XLS, XLSX**. |
30 | | - |
31 | | - |
32 | | - |
33 | | -1. Specify a Run Identifier (required). |
34 | | - |
35 | | - |
36 | | - |
37 | | -### Data Upload |
38 | | - |
39 | | -1. Drag-and-drop any result files you want to import onto the dropzone. |
40 | | - |
41 | | - |
42 | | - |
43 | | -1. Click the **Save Run** button. |
44 | | - |
45 | | - |
46 | | - |
47 | | -## View Results ## |
48 | | - |
49 | | -To view chromatograms for the results, follow these instructions: |
50 | | - |
51 | | -1. Go to the folder where your results reside. |
52 | | -1. On the **Assay List** webpart, click the name of the Signal Data assay you created. |
53 | | -1. Select the run(s) you want to look at, using the checkboxes. |
54 | | -1. Click **View Selected Runs**. |
55 | | - |
56 | | - |
57 | | - |
58 | | -1. Select the data run(s) you wish to view from the left. |
59 | | -1. Click the `Overlay Selected` button. |
60 | | - |
61 | | - |
62 | | - |
63 | | -1. The left selection pane will close, and the overlayed results will be displayed in the center pane. |
64 | | - |
65 | | - |
66 | | - |
67 | | -1. You can zoom into the graph by entering values in the **Time** and **mV Range** text boxes, or by drawing a new area inside the graph using the mouse. |
68 | | - |
69 | | - |
70 | | - |
71 | | -Enter values in the right pane to calculate areas under the curves. Select in the name column to highlight different graph lines. |
72 | | - |
73 | | - |
74 | | - |
75 | | -## Installing the Signal Data Module ## |
76 | | - |
77 | | -[Contact us](https://www.labkey.com/company/contact-us) for details on installing the Signal Data module. |
78 | | - |
79 | | - |
| 1 | +Module moved to [LabKey/commonAssays](https://github.com/LabKey/commonAssays) in 25.3 |
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