MacCossLabModules/nextflow/webapp/WEB-INF/nextflow/nextflowContext.xml at 7bd9076d6b684c3025811e768c2b8ef031f636c0 · LabKey/MacCossLabModules · GitHub

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<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans"
       xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xsi:schemaLocation="http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-2.0.xsd">

    <bean id="nextFlowPipelineRegistry" class="org.labkey.api.pipeline.TaskPipelineRegistrar">
        <property name="factoryImpls">
            <list>
                <bean class="org.labkey.nextflow.pipeline.NextFlowRunTask$Factory"/>
            </list>
        </property>

        <property name="pipelines">
            <list>
                <bean class="org.labkey.api.pipeline.TaskPipelineSettings">
                    <constructor-arg type="java.lang.Class" value="org.labkey.nextflow.pipeline.NextFlowPipelineJob"/>
                    <property name="taskProgressionSpec">
                        <list>
                            <bean id="nextFlowPipelineTask" class="org.labkey.api.pipeline.TaskId">
                                <constructor-arg><value type="java.lang.Class">org.labkey.nextflow.pipeline.NextFlowRunTask</value></constructor-arg>
                            </bean>
                            <ref bean="xarGeneratorNextFlow"/>
                        </list>
                    </property>
                </bean>
            </list>
        </property>
    </bean>

    <!-- Experiment derived tasks -->
    <bean id="xarGeneratorNextFlow" class="org.labkey.api.exp.pipeline.XarGeneratorFactorySettings">
        <constructor-arg value="xarGeneratorNextFlow"/>
        <!-- Import in the same thread pool as other Skyline doc imports -->
        <property name="location" value="webserver-high-priority" />
    </bean>

    <!-- Tasks registered in experiment module -->
    <bean id="xarGeneratorId" class="org.labkey.api.pipeline.TaskId">
        <constructor-arg><value type="java.lang.Class">org.labkey.api.exp.pipeline.XarGeneratorId</value></constructor-arg>
    </bean>
</beans>