Update build dependencies, workflows, and lint Python files

Author: bluemellophone

.github/workflows/codeql-analysis.yaml

@@ -7,7 +7,6 @@ on:
   push:
     branches:
       - main
-      - jrp/ci-cd-fixes
   schedule:
     - cron: '0 0 * * 1'
 

.github/workflows/docker-publish.yaml

@@ -7,7 +7,6 @@ on:
   push:
     branches:
       - main
-      - jrp/ci-cd-fixes
     tags:
       - v*
   schedule:

.github/workflows/testing.yaml

@@ -36,9 +36,6 @@ jobs:
           python -m pip install --upgrade pip
           pip install -r requirements/runtime.txt
           pip install -r requirements/optional.txt
-          cd tpl/pyastar2d
-          pip install -e .
-          cd ../../
           pip install -e .
 
       - name: Check with pre-commit

batbot/spectrogram/__init__.py

@@ -1513,10 +1513,14 @@ def compute_wrapper(
             )
 
         if 'waveplot' in segments:
-            cv2.imwrite(join(debug_path, 'spectrogram.compressed.waveplot.png'), segments['waveplot'])
+            cv2.imwrite(
+                join(debug_path, 'spectrogram.compressed.waveplot.png'), segments['waveplot']
+            )
 
         if 'stft_db' in segments and 'waveplot' in segments:
-            temp_top = np.stack((segments['stft_db'], segments['stft_db'], segments['stft_db']), axis=2)
+            temp_top = np.stack(
+                (segments['stft_db'], segments['stft_db'], segments['stft_db']), axis=2
+            )
             temp_bot = cv2.resize(
                 segments['waveplot'], temp_top.shape[:2][::-1], interpolation=cv2.INTER_LINEAR
             )
@@ -1611,10 +1615,12 @@ def compute_wrapper(
         'segments': metas,
     }
     if 'stft_db' in segments:
-        metadata['size']['compressed'] = {
-            'width.px': segments['stft_db'].shape[1],
-            'height.px': segments['stft_db'].shape[0],
-        },
+        metadata['size']['compressed'] = (
+            {
+                'width.px': segments['stft_db'].shape[1],
+                'height.px': segments['stft_db'].shape[0],
+            },
+        )
 
     metadata_path = join(output_folder, f'{base}.metadata.json')
     with open(metadata_path, 'w') as metafile:

requirements/optional.txt

@@ -5,7 +5,6 @@ flake8
 # gradio
 ipython
 isort
-line_profiler
 # onnx
 # onnxruntime
 pre-commit

setup.cfg

@@ -22,12 +22,16 @@ install_requires =
     cryptography
     cython
     librosa
+    line_profiler
     matplotlib
     numpy
     opencv-python-headless
     Pillow
     pooch
+    pyastar2d @ git+https://github.com/bluemellophone/batbot-pyastar2d@master
     rich
+    scikit-image
+    shapely
     sphinx-click
     tqdm
 python_requires = >=3.7