From 36f27ba5ab2bf2587d96c029f34eee548fa59c5f Mon Sep 17 00:00:00 2001 From: karttikjangid Date: Sun, 19 Apr 2026 23:55:58 +0530 Subject: [PATCH 1/4] Enhancement: Add explicit UserWarning for NaN classes in macro-averaged metrics --- perceptionmetrics/utils/segmentation_metrics.py | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/perceptionmetrics/utils/segmentation_metrics.py b/perceptionmetrics/utils/segmentation_metrics.py index 3975e5dd..6ee4d666 100644 --- a/perceptionmetrics/utils/segmentation_metrics.py +++ b/perceptionmetrics/utils/segmentation_metrics.py @@ -1,5 +1,6 @@ from collections import defaultdict import math +import warnings from typing import List, Optional, Union import numpy as np @@ -255,7 +256,15 @@ def get_averaged_metric( """ metric = getattr(self, f"get_{metric_name}") if method == "macro": - return float(np.nanmean(metric(per_class=True))) + per_class_values = metric(per_class=True) + nan_mask = np.isnan(per_class_values) + missing_count = int(np.sum(nan_mask)) + if missing_count > 0: + warnings.warn( + f"Warning: {missing_count} class(es) were missing from the confusion matrix. Their {metric_name.upper()} evaluated to NaN and will be ignored in the macro-average.", + UserWarning, + ) + return float(np.nanmean(per_class_values)) if method == "micro": return float(metric(per_class=False)) if method == "weighted": From 47fbe096b851bfa949ffa4cca008f73be2b89692 Mon Sep 17 00:00:00 2001 From: karttikjangid Date: Mon, 20 Apr 2026 00:33:43 +0530 Subject: [PATCH 2/4] chore: Update poetry.lock to resolve CI dependency sync --- poetry.lock | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/poetry.lock b/poetry.lock index 22115268..09ddce05 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.3.2 and should not be changed by hand. [[package]] name = "absl-py" @@ -1019,7 +1019,7 @@ accessible-pygments = ">=0.0.5" beautifulsoup4 = "*" pygments = ">=2.7" sphinx = ">=7.0,<10.0" -sphinx-basic-ng = ">=1.0.0.beta2" +sphinx-basic-ng = ">=1.0.0b2" [[package]] name = "gitdb" @@ -1433,7 +1433,7 @@ files = [ [package.dependencies] attrs = ">=22.2.0" -jsonschema-specifications = ">=2023.03.6" +jsonschema-specifications = ">=2023.3.6" referencing = ">=0.28.4" rpds-py = ">=0.25.0" @@ -4227,4 +4227,4 @@ type = ["pytest-mypy"] [metadata] lock-version = "2.1" python-versions = "^3.10" -content-hash = "d1e29b4bdb3f80b558d932fc228b32bb1e094a4aa097c8eed9094dda5963c551" +content-hash = "e00cde9b59793887dcf619c6eb0314da840349488ad14e3bb506620bfc587ad5" From 1e3122669d40561746d3fd474d82150b3fe9eef3 Mon Sep 17 00:00:00 2001 From: karttikjangid Date: Mon, 20 Apr 2026 01:27:28 +0530 Subject: [PATCH 3/4] fix: resolve CI linter issues and sync torch dependencies --- .../utils/segmentation_metrics.py | 13 +- poetry.lock | 452 +++++++++++++++++- pyproject.toml | 2 + 3 files changed, 461 insertions(+), 6 deletions(-) diff --git a/perceptionmetrics/utils/segmentation_metrics.py b/perceptionmetrics/utils/segmentation_metrics.py index 6ee4d666..b55ee5b2 100644 --- a/perceptionmetrics/utils/segmentation_metrics.py +++ b/perceptionmetrics/utils/segmentation_metrics.py @@ -1,6 +1,5 @@ from collections import defaultdict import math -import warnings from typing import List, Optional, Union import numpy as np @@ -259,12 +258,16 @@ def get_averaged_metric( per_class_values = metric(per_class=True) nan_mask = np.isnan(per_class_values) missing_count = int(np.sum(nan_mask)) + if missing_count > 0: - warnings.warn( - f"Warning: {missing_count} class(es) were missing from the confusion matrix. Their {metric_name.upper()} evaluated to NaN and will be ignored in the macro-average.", - UserWarning, + import warnings + # Use implicit string concatenation to keep lines short + msg = ( + f"Warning: {missing_count} class(es) were missing from the confusion matrix. " + f"Their {metric_name.upper()} evaluated to NaN and will be ignored in the macro-average." ) - return float(np.nanmean(per_class_values)) + warnings.warn(msg, UserWarning) + return float(np.nanmean(metric(per_class=True))) if method == "micro": return float(metric(per_class=False)) if method == "weighted": diff --git a/poetry.lock b/poetry.lock index 09ddce05..632c758c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -905,6 +905,18 @@ files = [ [package.extras] devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"] +[[package]] +name = "filelock" +version = "3.29.0" +description = "A platform independent file lock." +optional = false +python-versions = ">=3.10" +groups = ["main"] +files = [ + {file = "filelock-3.29.0-py3-none-any.whl", hash = "sha256:96f5f6344709aa1572bbf631c640e4ebeeb519e08da902c39a001882f30ac258"}, + {file = "filelock-3.29.0.tar.gz", hash = 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