COMP: Replace hdf5.h includes with itk_hdf5.h in MINC library

Fixes -Wshadow-header warnings about duplicate header candidates. The MINC library
sources included <hdf5.h> directly, which could resolve to two different headers
(itkhdf5/hdf5.h and itkhdf5/src/hdf5.h) causing a shadow header warning.

Use ITK's itk_hdf5.h wrapper instead, which properly handles both internal and
system HDF5 configurations.

Author: blowekamp

Modules/ThirdParty/MINC/src/libminc/libcommon/ParseArgv.c

@@ -38,7 +38,7 @@
 #endif
 
 #ifdef HAVE_MINC2
-#include <hdf5.h>
+#include <itk_hdf5.h>
 #endif
 
 #include <math.h>

Modules/ThirdParty/MINC/src/libminc/libsrc/minc.h

@@ -167,7 +167,7 @@
 #endif /* MNCAPI not defined */
 
 #if MINC2
-#include <hdf5.h>
+#include <itk_hdf5.h>
 #include <netcdf.h>
 #include "minc_compat.h"
 #else

Modules/ThirdParty/MINC/src/libminc/libsrc2/convert.c

@@ -10,7 +10,7 @@
  * \defgroup mi2Cvt MINC 2.0 Coordinate and Voxel Conversion Functions
  */
 #include <stdlib.h>
-#include <hdf5.h>
+#include <itk_hdf5.h>
 #include <math.h>
 #include <float.h>
 #include "minc2.h"

Modules/ThirdParty/MINC/src/libminc/libsrc2/datatype.c

@@ -3,7 +3,7 @@
  ************************************************************************/
 
 #include <stdlib.h>
-#include <hdf5.h>
+#include <itk_hdf5.h>
 #include "minc2.h"
 #include "minc2_private.h"
 

Modules/ThirdParty/MINC/src/libminc/libsrc2/grpattr.c

@@ -6,7 +6,7 @@
  * Functions to manipulate attributes and groups.
  ************************************************************************/
 #include <stdlib.h>
-#include <hdf5.h>
+#include <itk_hdf5.h>
 
 #ifdef HAVE_CONFIG_H
 #include "config.h"

Modules/ThirdParty/MINC/src/libminc/libsrc2/label.c

@@ -13,7 +13,7 @@
  ************************************************************************/
 
 #include <stdlib.h>
-#include <hdf5.h>
+#include <itk_hdf5.h>
 #include "minc2.h"
 #include "minc2_private.h"
 

Modules/ThirdParty/MINC/src/libminc/libsrc2/m2util.c

@@ -3,10 +3,7 @@
 * \author Leila Baghdadi, Bert Vincent
 *
 ************************************************************************/
-#include <hdf5.h>
-
-#include <stdlib.h>
-#include <math.h>
+#include <itk_hdf5.h>
 
 #ifdef HAVE_CONFIG_H
 #include "config.h"

Modules/ThirdParty/MINC/src/libminc/libsrc2/minc2.h

@@ -5,7 +5,7 @@
 #ifndef MINC2_H
 #define MINC2_H
 
-#include <hdf5.h>
+#include <itk_hdf5.h>
 #include "minc2_defs.h"
 #include "minc2_structs.h"
 #include "minc2_error.h"

Modules/ThirdParty/MINC/src/libminc/libsrc2/record.c

@@ -6,7 +6,7 @@
 #include "config.h"
 #endif /*HAVE_CONFIG_H*/
 
-#include <hdf5.h>
+#include <itk_hdf5.h>
 #include "minc2.h"
 #include "minc2_private.h"
 

Modules/ThirdParty/MINC/src/libminc/libsrc2/slice.c

@@ -19,7 +19,7 @@
 #endif /*HAVE_CONFIG_H*/
 
 #include <stdlib.h>
-#include <hdf5.h>
+#include <itk_hdf5.h>
 #include "minc2.h"
 #include "minc2_private.h"