diff --git a/.github/workflows/preview.yaml b/.github/workflows/preview.yaml
index 3f8cfd7a..eb6b1ba6 100644
--- a/.github/workflows/preview.yaml
+++ b/.github/workflows/preview.yaml
@@ -1,32 +1,43 @@
on:
pull_request:
+ types:
+ - opened
+ - reopened
+ - synchronize # When the ref of the branch is updated (= commit to the branch to merge)
+ - closed # Including closed to remove preview when PR is closed.
branches: main
name: Quarto Preview
+concurrency:
+ group: ${{ github.workflow }}-pr-${{ github.event.pull_request.number }} # Unique Quarto Preview per PR
+ cancel-in-progress: true
+
jobs:
build-preview:
+ if: github.event.action != 'closed' # If closing the PR, no publishing
runs-on: ubuntu-latest
permissions:
- contents: read
- pull-requests: write
+ contents: write # For pushing to gh-pages branch
+ pull-requests: write # For permissions to write comments on PRs
+ container:
+ image: inseefrlab/onyxia-r-datascience:r4.6.0
+ options: --user root # Force root user
steps:
- name: Check out repository
- uses: actions/checkout@v4
-
- - name: Install R
- uses: r-lib/actions/setup-r@v2
- with:
- r-version: '4.6'
+ uses: actions/checkout@v6
- name: Install dependencies
run: |
- sudo ./docker/dependencies.sh
curl -sSL https://raw.githubusercontent.com/A2-ai/rv/refs/heads/main/scripts/install.sh | bash
- export PATH="~/.local/bin:$PATH"
- source ~/.bashrc
+ export PATH="$HOME/.local/bin:$PATH" # Use $HOME instead of ~ for reliability
+ . ~/.bashrc # no source command for this container, so use . instead
rv sync
+ - name: Don't publish CNAME for preview
+ run: |
+ rm CNAME
+
- name: Set up Quarto environment
uses: quarto-dev/quarto-actions/setup@v2
@@ -37,19 +48,46 @@ jobs:
uses: peaceiris/actions-gh-pages@v3
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
- publish_dir: ./_site
+ publish_dir: ./_public
destination_dir: previews/pr-${{ github.event.pull_request.number }}
keep_files: true
- - name: Comment PR with preview link
- uses: actions/github-script@v7
+ - name: Comment PR (custom)
+ uses: marocchino/sticky-pull-request-comment@v3
+ with:
+ header: pr-preview
+ message: |
+ :rocket: View preview at
${{ steps.deploy-preview.outputs.preview-url }}
+ Built to branch gh-pages at ${{ steps.deploy-preview.outputs.action-start-time }}.
Preview will be ready when the GitHub Pages deployment is complete.
+
+
+# For this workflow only
+ delete-preview:
+ if: github.event.action == 'closed' # Only run when PR is closed
+ runs-on: ubuntu-latest
+ permissions:
+ contents: write # Required for gh-pages pushes
+ pull-requests: write # Required to comment PR
+ steps:
+ - name: Check out repository
+ uses: actions/checkout@v6
+ with:
+ fetch-depth: 0 # To enable full access to Git repo
+ ref: ${{ github.event.pull_request.head.ref }} # Reference of the commit to checkout to. To ensure it's the one of the PR
+ repository: ${{github.event.pull_request.head.repo.full_name}} # Reference to the branch to checkout to. Useful with PR from forks
+
+ - name: Remove preview
+ id: remove-preview
+ uses: rossjrw/pr-preview-action@v1.8.1
+ with:
+ action: remove
+ umbrella-dir: previews
+ token: ${{ secrets.GITHUB_TOKEN }}
+
+ - name: Comment PR that preview was removed
+ uses: marocchino/sticky-pull-request-comment@v3
with:
- script: |
- const pr_number = context.issue.number;
- const preview_url = `https://${{ github.repository_owner }}.github.io/utilitR/previews/pr-${pr_number}/`;
- github.rest.issues.createComment({
- issue_number: context.issue.number,
- owner: context.repo.owner,
- repo: context.repo.repo,
- body: `🔍 Preview deployed! View it here: [PR #${pr_number} Preview](${preview_url})`
- });
+ header: pr-preview
+ message: |
+ Preview removed because the pull request was closed.
+ ${{ steps.remove-preview.outputs.action-start-time }}
\ No newline at end of file
diff --git a/.github/workflows/prod.yaml b/.github/workflows/prod.yaml
index 5daf535b..cb24616a 100644
--- a/.github/workflows/prod.yaml
+++ b/.github/workflows/prod.yaml
@@ -21,7 +21,6 @@ jobs:
- name: Install dependencies
run: |
- sudo ./docker/dependencies.sh
curl -sSL https://raw.githubusercontent.com/A2-ai/rv/refs/heads/main/scripts/install.sh | bash
export PATH="~/.local/bin:$PATH"
source ~/.bashrc
diff --git a/Dockerfile b/Dockerfile
deleted file mode 100644
index 8b82e01c..00000000
--- a/Dockerfile
+++ /dev/null
@@ -1,45 +0,0 @@
-FROM inseefrlab/onyxia-rstudio:r4.4.1-2024.10.14
-
-# R packages
-COPY ./DESCRIPTION /tmp/build_image/
-RUN Rscript -e "install.packages(c('renv','yaml'))"
-
-RUN apt-get update \
- && apt-get -qq install gnupg
-
-RUN sh -c 'echo "deb http://http.us.debian.org/debian stable main contrib non-free" >> /etc/apt/sources.list' \
- && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 648ACFD622F3D138 \
- && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 0E98404D386FA1D9 \
- && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 605C66F00D6C9793
-
-RUN apt-get update \
- && echo "ttf-mscorefonts-installer msttcorefonts/accepted-mscorefonts-eula select true" | debconf-set-selections
-
-RUN apt-get -qq install --no-install-recommends \
- ttf-mscorefonts-installer \
- fonts-liberation \
- fonts-freefont-ttf \
- libssl-dev
-
-RUN apt-get -qq install --no-install-recommends \
- imagemagick \
- libmagick++-dev \
- ghostscript \
- libglpk40
-
-RUN apt-get -qq install --no-install-recommends \
- libgs-dev \
- librsvg2-dev \
- libwebp-dev \
- jq
-
-RUN rm -rf /var/lib/apt/lists/* \
- && rm -rf /src/*.deb
-RUN apt-get upgrade -y
-
-# Installing mc
-
-RUN wget https://dl.min.io/client/mc/release/linux-amd64/mc -O /usr/local/bin/mc && \
- chmod +x /usr/local/bin/mc
-
-
diff --git a/README.md b/README.md
index 4d6c3a72..a03dc530 100644
--- a/README.md
+++ b/README.md
@@ -3,7 +3,7 @@
[](https://github.com/InseeFrLab/utilitR/actions)
-[](https://hub.docker.com/repository/docker/inseefrlab/utilitr/general)
+
[](https://datalab.sspcloud.fr/launcher/ide/rstudio?name=rstudio%20utilitr&version=2.4.7&s3=default&init.personalInit=%C2%ABhttps%3A%2F%2Fraw.githubusercontent.com%2FInseeFrLab%2FutilitR%2Frefs%2Fheads%2Fmain%2Finit_utilitr.sh%C2%BB&kubernetes.role=%C2%ABadmin%C2%BB&git.repository=%C2%ABhttps%3A%2F%2Fgithub.com%2Finseefrlab%2Futilitr.git%C2%BB&networking.user.enabled=true&autoLaunch=false)
diff --git a/doc/extra_info.md b/doc/extra_info.md
index b62d86f4..6d7db3a8 100644
--- a/doc/extra_info.md
+++ b/doc/extra_info.md
@@ -18,79 +18,3 @@ install.packages("remotes")
remotes::install_deps(dependencies = TRUE)
```
-## :three: Utilisation d'un container
-
-L'environnement de travail utilisé pour la compilation de la documentation est disponible sous la forme d'une image docker :
-
-```
-docker.io/inseefrlab/utilitr:latest
-```
-
-Cette image comprend toutes les dépendances système ainsi que les packages R nécessaires à la compilation du livre.
-Il comprend également RStudio : voir la procédure ci-après pour exécuter cet environnement.
-
-### Container temporaire
-
-_Cette solution vous sera utile si vous souhaitez apporter une modification ponctuelle au projet._
-
-### Utilisation en ligne avec Binder
-
-:warning: Cette solution ne fonctionne plus à l'heure actuelle. Elle sera remise en état dès que possible
-
-Afin d'assurer une parfaite reproductibilité, un environnement de travail est disponible en ligne en cliquant sur ce bouton
-[](https://mybinder.org/v2/gl/linogaliana%2FdocumentationR/binder?urlpath=rstudio).
-
-Vous arrivez sur un environnement de travail RStudio avec tous les packages déjà installés. Cet environnement utilise le service [Binder](https://mybinder.org) : il peut être indisponible ponctuellement.
-
-### Utilisation de docker sur un poste de travail
-
-Si docker est installé sur votre machine, vous pouvez exécuter :
-
-```bash
-docker run --rm -p 8787:8787 -e PASSWORD=monpassword docker.io/inseefrlab/utilitr:latest
-```
-
-Vous pouvez remplacer `monpassword` par le mot de passe de votre choix.
-
-Un serveur RStudio est alors disponible Ă l'url .
-Pour vous connecter sur ce serveur, vous devez utiliser :
-
-- nom d'utilisateur : `rstudio`
-- mot de passe : le mot de passe choisi ci-dessus (`monpassword`) dans l'exemple.
-
-Une fois connecté à RStudio, vous devez ensuite cloner le projet .
-Si vous opérez des modifications, n'oubliez pas de transmettre vos modifications à l'aide de `git` grâce à un `push`. En effet, l'utilisation de l'option `--rm` détruira automatiquement votre container et son système de fichiers.
-
-### Container permanent
-
-Il vous est possible de créer un container permanent (attention, celui peut-être obsolète si de nouvelles dépendances sont ajoutées) ce qui vous permettra de ne pas perdre vos fichiers.
-
-Créez un container appelé `mon_container` (vous pouvez changer ce nom) en mode détaché :
-
-```bash
-docker run --name mon_container -d -p 8787:8787 -e PASSWORD=monpassword docker.io/inseefrlab/utilitr:latest
-```
-
-Vous pouvez aussi attacher un volume à ce container grâce à l'option `-v` (sous linux, n'oubliez pas de rajouter l'option `-e USERID=$UID`). Par exemple, pour ajouter vos clés `ssh` :
-
-```bash
-docker run --name mon_container -d -p 8787:8787 -v $HOME/.ssh:/home/rstudio/.ssh -e USERID=$UID -e PASSWORD=monpassword docker.io/inseefrlab/utilitr:latest
-```
-
-Une fois ce container créé et lancé, vous pouvez vous connecter sur le serveur RStudio disponible à l'adresse . Pour se connecter, le nom d'utilisateur est `rstudio` et le mot de passe `monpassword`.
-
-Dans RStudio, vous pouvez ensuite cloner le projet et travailler. N'oubliez pas de sauvegarder vos modifications.
-
-Une fois que vous avez fini de travailler :
-
-- dans RStudio, cliquez sur l'icone rouge située en haut à droite _"Quit the current R session"_.
-- dans votre terminal, exécutez :
- ```bash
- docker stop mon_container
- ```
-
-Pour relancer plus tard votre serveur RStudio et retrouver vos fichiers, vous pouvez redémarrer votre container :
-
-```bash
-docker start mon_container
-```
diff --git a/docker/dependencies.sh b/docker/dependencies.sh
deleted file mode 100755
index 6c70f511..00000000
--- a/docker/dependencies.sh
+++ /dev/null
@@ -1,32 +0,0 @@
-#!/bin/bash
-
-# Update package lists
-apt-get update && apt-get -qq install gnupg
-
-# Install necessary packages without recommended dependencies
-apt-get -qq install --no-install-recommends \
- libssl-dev
-
-apt-get -qq install --no-install-recommends \
- imagemagick \
- libmagick++-dev \
- ghostscript \
- libglpk40 \
- libgdal-dev libgeos-dev \
- libudunits2-dev
-
-apt-get -qq install --no-install-recommends \
- libgs-dev \
- librsvg2-dev \
- libwebp-dev \
- jq
-
-# Clean up apt cache
-rm -rf /var/lib/apt/lists/* && rm -rf /src/*.deb
-
-# Upgrade packages
-apt-get upgrade -y
-
-# Install mc (MinIO Client)
-wget https://dl.min.io/client/mc/release/linux-amd64/mc -O /usr/local/bin/mc && \
- chmod +x /usr/local/bin/mc
diff --git a/docker/seccomp/chromium.json b/docker/seccomp/chromium.json
deleted file mode 100644
index e5b0f2d6..00000000
--- a/docker/seccomp/chromium.json
+++ /dev/null
@@ -1,1535 +0,0 @@
-{
- "defaultAction": "SCMP_ACT_ERRNO",
- "syscalls": [
- {
- "name": "accept",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "accept4",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "access",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "alarm",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "arch_prctl",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "bind",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "brk",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "capget",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "capset",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "chdir",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "chmod",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "chown",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "chown32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "chroot",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "clock_getres",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "clock_gettime",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "clock_nanosleep",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "clone",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "close",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "connect",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "creat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "dup",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "dup2",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "dup3",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "epoll_create",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "epoll_create1",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "epoll_ctl",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "epoll_ctl_old",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "epoll_pwait",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "epoll_wait",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "epoll_wait_old",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "eventfd",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "eventfd2",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "execve",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "execveat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "exit",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "exit_group",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "faccessat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fadvise64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fadvise64_64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fallocate",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fanotify_init",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fanotify_mark",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fchdir",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fchmod",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fchmodat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fchown",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fchown32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fchownat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fcntl",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fcntl64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fdatasync",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fgetxattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "flistxattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "flock",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fork",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fremovexattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fsetxattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fstat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fstat64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fstatat64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fstatfs",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fstatfs64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "fsync",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "ftruncate",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "ftruncate64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "futex",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "futimesat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getcpu",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getcwd",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getdents",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getdents64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getegid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getegid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "geteuid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "geteuid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getgid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getgid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getgroups",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getgroups32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getitimer",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getpeername",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getpgid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getpgrp",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getpid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getppid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getpriority",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getrandom",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getresgid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getresgid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getresuid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getresuid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getrlimit",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "get_robust_list",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- },
- {
- "name": "getsockname",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getsockopt",
- "action": "SCMP_ACT_ALLOW",
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- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
- "name": "gettid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
- "name": "gettimeofday",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "getxattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "inotify_init",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "io_cancel",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "ioctl",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "io_destroy",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "io_getevents",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "ioprio_get",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "ioprio_set",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "io_setup",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "io_submit",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "kill",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "lchown",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "lchown32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "link",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "linkat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "listen",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "listxattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "llistxattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "_llseek",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "lremovexattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "lseek",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "lsetxattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "lstat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "lstat64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "madvise",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "memfd_create",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mincore",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mkdir",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mkdirat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mknod",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mknodat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mlock",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mlockall",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mmap",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mmap2",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mprotect",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mq_getsetattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mq_notify",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mq_open",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mq_timedreceive",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mq_timedsend",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mq_unlink",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "mremap",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "msgctl",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "msgget",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "msgrcv",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "msgsnd",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "msync",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "munlock",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "newfstatat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "_newselect",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "open",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "open_by_handle_at",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "openat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "pause",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "pipe",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "pipe2",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "poll",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "ppoll",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "prctl",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "pread64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "preadv",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "prlimit64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "pselect6",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "pwrite64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "pwritev",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "read",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "readahead",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "readlink",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "readlinkat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "readv",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "recvfrom",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "recvmmsg",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "recvmsg",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "remap_file_pages",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "removexattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "rename",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "renameat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "renameat2",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "rmdir",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "rt_sigaction",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "rt_sigpending",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "rt_sigprocmask",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "rt_sigqueueinfo",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "rt_sigreturn",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "rt_sigsuspend",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "rt_sigtimedwait",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "rt_tgsigqueueinfo",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_getaffinity",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_getattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_getparam",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_get_priority_max",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_get_priority_min",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_getscheduler",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_rr_get_interval",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_setaffinity",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_setattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_setparam",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_setscheduler",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sched_yield",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "seccomp",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "select",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "semctl",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "semget",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "semop",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "semtimedop",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sendfile",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sendfile64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sendmmsg",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sendmsg",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sendto",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setdomainname",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setfsgid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setfsgid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setfsuid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setfsuid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setgid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setgid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setgroups",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setgroups32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sethostname",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setitimer",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setns",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setpgid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setpriority",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setregid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setregid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setresgid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setresgid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setresuid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setresuid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setreuid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setreuid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setrlimit",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "set_robust_list",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setsid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setsockopt",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "set_thread_area",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "set_tid_address",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setuid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setuid32",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "setxattr",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "shmat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "shmctl",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "shmdt",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "shmget",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "shutdown",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sigaltstack",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "signalfd",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "signalfd4",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "socket",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "socketpair",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "splice",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
- "name": "stat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
- "name": "stat64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
- "name": "statfs",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "statfs64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "symlink",
- "action": "SCMP_ACT_ALLOW",
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- {
- "name": "symlinkat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sync",
- "action": "SCMP_ACT_ALLOW",
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- },
- {
- "name": "sync_file_range",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "syncfs",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "sysinfo",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "syslog",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "tee",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "tgkill",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
- "name": "time",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
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- "action": "SCMP_ACT_ALLOW",
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- },
- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "timerfd_create",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "timerfd_gettime",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "timerfd_settime",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "timer_getoverrun",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "timer_gettime",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "timer_settime",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
- "name": "times",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
- "name": "tkill",
- "action": "SCMP_ACT_ALLOW",
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- {
- "name": "truncate",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
- "name": "truncate64",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
- "name": "ugetrlimit",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "umask",
- "action": "SCMP_ACT_ALLOW",
- "args": null
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- {
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- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "unlink",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "unlinkat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "unshare",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "utime",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "utimensat",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "utimes",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "vfork",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "vhangup",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "vmsplice",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "wait4",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "waitid",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "write",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- },
- {
- "name": "writev",
- "action": "SCMP_ACT_ALLOW",
- "args": null
- }
- ]
-}
diff --git a/resources/fichiers_plats/script_init_fichiers_plats.R b/resources/fichiers_plats/script_init_fichiers_plats.R
deleted file mode 100644
index 31c3879d..00000000
--- a/resources/fichiers_plats/script_init_fichiers_plats.R
+++ /dev/null
@@ -1,21 +0,0 @@
-remotes::install_github("inseefrlab/doremifasol")
-install.packages("esquisse")
-
-# Télécharger les données grâce à doremifasol
-options(doremifasol.telDir = "~")
-doremifasol::telechargerFichier("BPE_ENS")
-doremifasol::telechargerFichier("DECES_COM_0918")
-
-fichiers_zip <- list.files(pattern = "\\.zip$", full.names = TRUE)
-
-# DĂ©compresser les fichiers .zip
-invisible(
- lapply(
- fichiers_zip,
- utils::unzip,
- overwrite = TRUE
- )
-)
-
-# Supprimer les fichiers .zip
-unlink(fichiers_zip)
diff --git a/resources/init_9juin.sh b/resources/init_9juin.sh
deleted file mode 100644
index 6fc4d3c5..00000000
--- a/resources/init_9juin.sh
+++ /dev/null
@@ -1 +0,0 @@
-runuser -l rstudio -c "Rscript -e \"source('https://raw.githubusercontent.com/InseeFrLab/utilitR/master/resources/fichiers_plats/script_init_fichiers_plats.R')\""
diff --git a/rproject.toml b/rproject.toml
index c62bdf63..13fc563f 100644
--- a/rproject.toml
+++ b/rproject.toml
@@ -48,4 +48,5 @@ dependencies = [
{ name = "OECD", git = "https://github.com/expersso/OECD", branch = "master" },
"visNetwork",
"tarchetypes",
+ "knitr",
]
diff --git a/rv.lock b/rv.lock
index 039ffb5e..c6b77b08 100644
--- a/rv.lock
+++ b/rv.lock
@@ -615,7 +615,7 @@ dependencies = [
[[packages]]
name = "duckdb"
-version = "1.5.2"
+version = "1.5.4.2"
source = { repository = "https://packagemanager.posit.co/cran/latest" }
force_source = false
dependencies = [