MultimetricST/requirements.txt at main · InfOmics/MultimetricST · GitHub

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anndata==0.10.9
anywidget==0.9.18
cmcrameri==1.9
Cython==3.1.4
dask==2024.4.2
dask-expr==1.0.14
dask-image==2024.5.3
GraphST==1.1.1
gudhi==3.11.0
ipython==8.37.0
jupyter_bokeh==4.0.5
kaleido==1.1.0
louvain==0.8.2
matplotlib<3.9
matplotlib-inline==0.1.7
mkl==2025.2.0
mkl-fft==1.3.6
mkl-random==1.2.2
mkl-service==2.5.2
networkx==2.8.8
numpy==1.24.4
pandas==2.3.3
panel==1.8.2
plotly==6.3.0
pot==0.9.4
progress==1.6.1
psutil
pylib-openblas==0.0.2
scanpy==1.10.3
scikit-learn==1.3.2
scikit-misc==0.3.1
seaborn==0.13.2
scipy==1.9.3
somde==0.1.8
SpaGCN==1.2.7
statsmodels>=0.14
squidpy==1.6.1
tqdm==4.67.1
git+https://github.com/InfOmics/spatial_ss.git
pyproj>=3.5
shapely>=2.0
geopandas>=0.14
rasterio>=1.3
fiona>=1.9
distributed==2024.4.2
python-igraph==0.10.6
zarr==2.16.1
ipykernel
setuptools<81
wheel