MutationDiseq/pyproject.toml at main · HuttleyLab/MutationDiseq · GitHub

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[build-system]
requires = ["flit_core >=3.12.0,<4"]
build-backend = "flit_core.buildapi"

[project]
name = "mdeq"
authors = [
    { name = "Katherine Caley", email = "katherine.caley@anu.edu.au" },
    { name = "Gavin Huttley", email = "Gavin.Huttley@anu.edu.au" },
]
keywords = [
    "biology",
    "genomics",
    "statistics",
    "phylogeny",
    "evolution",
    "bioinformatics",
]
readme = "README.md"
license = { file = "LICENSE" }
requires-python = ">=3.11,<=3.14"
dependencies = [
    "cogent3>=2025.7.10a5",
    "scinexus",
    "click",
    "numpy",
    "scipy",
    "scitrack",
    "rich",
    "trogon",
]
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: BSD License",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Software Development :: Libraries :: Python Modules",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
]
dynamic = ["version", "description"]

[tool.flit.sdist]
include = ["src/*", "pyproject.toml"]

[project.scripts]
mdeq = "mdeq:main"

[project.optional-dependencies]
test = ["pytest", "pytest-cov", "pytest-xdist", "nox"]
dev = ["cogapp", "docformatter", "mdeq[test]", "ruff==0.15.12"]

[tool.pytest.ini_options]
addopts = ["--strict-config", "-ra"]
testpaths = "tests"