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test again Docker #16: Commit b8ef156 pushed by cjfields
17s docker/DADA-1.36
docker/DADA-1.36
17s
test docker deployment under HPCBio Docker #15: Commit 0c0acfb pushed by cjfields
16s docker/DADA-1.36
docker/DADA-1.36
16s
update nf-core modules nf-core CI #221: Commit efb51a0 pushed by cjfields
13m 14s feature/core-cutadapt
feature/core-cutadapt
13m 14s
start removing unused params nf-core CI #220: Commit 6ae8d1f pushed by cjfields
5m 43s feature/core-cutadapt
feature/core-cutadapt
5m 43s
Major initial push to use nf-core cutadapt; requires some additional … nf-core CI #219: Commit 48f5735 pushed by cjfields
4m 57s feature/core-cutadapt
feature/core-cutadapt
4m 57s
Major revisions: nf-core CI #218: Commit 3c1ebde pushed by cjfields
19m 9s dev
dev
19m 9s
Fairly substantial checkin. Among the changes nf-core CI #217: Commit 6a98e1a pushed by cjfields
21m 12s dev
dev
21m 12s
add in stub code (commented for now) for alternative MSA tools nf-core CI #216: Commit b8ccb74 pushed by cjfields
14m 52s dev
dev
14m 52s
add a few notes nf-core CI #215: Commit e5695a4 pushed by cjfields
21m 10s dev
dev
21m 10s
remove conversion to Unclassified; we can't assume all NA's for all m… nf-core CI #214: Commit d240719 pushed by cjfields
18m 39s dev
dev
18m 39s
only set a truncation parameter if it is greater than 0 (this matches… nf-core CI #213: Commit 0fd10fc pushed by cjfields
18m 13s dev
dev
18m 13s
Remove array for the time being, not supported for local runs. This *… nf-core CI #212: Commit e1d63fb pushed by cjfields
19m 15s dev
dev
19m 15s
remove debugging nf-core CI #211: Commit 7d4e74d pushed by cjfields
7m 16s dev
dev
7m 16s
get single- and paired-end working again nf-core CI #210: Commit b7288e5 pushed by cjfields
1m 3s dev
dev
1m 3s
fix small change that affects read tracking nf-core CI #209: Commit abf7350 pushed by cjfields
8m 7s dev
dev
8m 7s
greatly simplify workflow steps; this includes moving the DADA2-speci… nf-core CI #208: Commit 7c3d0af pushed by cjfields
1m 23s dev
dev
1m 23s
change the dada_opts arg toa string; we can't guarantee R compliance … nf-core CI #207: Commit 67b8c79 pushed by cjfields
19m 9s dev
dev
19m 9s
temporary change to retain merged sequences, want to check stats nf-core CI #206: Commit a459689 pushed by cjfields
10m 35s dev
dev
10m 35s
changes to dada opts nf-core CI #205: Commit b39c177 pushed by cjfields
7m 54s dev
dev
7m 54s
Reverts 36ae238, committed to address an 'error' that was actually an… nf-core CI #204: Commit 114ca6e pushed by cjfields
18m 54s dev
dev
18m 54s
add in functions analagous to trunc options in DADA2, which needs tes… nf-core CI #203: Commit 3f8a5d7 pushed by cjfields
17m 57s dev
dev
17m 57s
switch overhang trimming for testing; the original parameter does not… nf-core CI #202: Commit 36ae238 pushed by cjfields
42s dev
dev
42s
change filter name nf-core CI #201: Commit da9ebdb pushed by cjfields
19m 56s dev
dev
19m 56s
change filter name, and fix paths nf-core CI #200: Commit a8539c7 pushed by cjfields
1m 48s dev
dev
1m 48s
get basic qiime tax calling working nf-core CI #199: Commit 0b6e54e pushed by cjfields
5m 14s dev
dev
5m 14s