ScreenPro2/.github/workflows/python-package.yml at main · FunGI-cap/ScreenPro2 · GitHub

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name: Python package

on:
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]

jobs:
  build:
    runs-on: ${{ matrix.os-version }}
    name: ${{ matrix.os-version }} (${{ matrix.python-version }})

    strategy:
      fail-fast: false
      matrix:
        os-version: ["ubuntu-latest"]
        python-version: ["3.11"]

    steps:
      - uses: actions/checkout@v3

      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v3
        with:
          python-version: ${{ matrix.python-version }}

      - name: Cache pip dependencies
        uses: actions/cache@v4
        with:
          path: ~/.cache/pip
          key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('**/requirements.txt', 'environment.yml') }}

      - name: Install flake8
        run: pip install flake8

      - name: Lint with flake8
        run: |
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics

      - name: Install miniconda
        uses: conda-incubator/setup-miniconda@v3
        with:
          miniconda-version: "latest"
          auto-update-conda: true
          python-version: ${{ matrix.python-version }}
          channels: conda-forge,bioconda
          environment-file: environment.yml