Update PyMOL configuration to remove transparency setting and adjust demo script to set transparency for surface rendering.

Author: FridrichMethod

configs/.pymolrc

@@ -77,7 +77,6 @@ set surface_quality, 1
 set surface_ramp_above_mode, 1
 set surface_smooth_edges, 1
 set surface_solvent, 0
-set transparency, 0.5
 set transparency_mode, 2
 set two_sided_lighting, 1
 set valence, 1

scripts/demos/surface.pml

@@ -8,6 +8,7 @@ color_deep lightblue, resi 1-61
 color_deep palegreen, resi 62-270
 color_deep lightpink, resi 271-320
 util.cba(144, "resn BTX", _self=cmd)
+set transparency, 0.5
 
 # set the view
 show surface, pol.