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NAMESPACE
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122 lines (121 loc) · 3.7 KB
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# Generated by roxygen2: do not edit by hand
export(LogTibble)
export(STCMToCDMTables)
export(appendUsagiFileToSTCMtable)
export(autoFixDatabaseCodeCountsFile)
export(buildStatusDashboard)
export(buildUpdateStatusMd)
export(buildValidationStatusMd)
export(buildVocabulariesAll)
export(calculateMappingStatus)
export(conceptRelationshipToAncestorTables)
export(createSourceToConceptMapExtended)
export(duckdbToOMOPVocabularyCSVs)
export(helper_createATemporaryCopyOfTheOMOPVocabularyDuckDB)
export(omopVocabularyCSVsToDuckDB)
export(plotTableMappingStatus)
export(plotTableVocabularyStatus)
export(readUsagiFile)
export(updateUsagiFile)
export(updateVocabularyFolder)
export(validateCDMtablesWithDQD)
export(validateCodeCountsFile)
export(validateCodeCountsFolder)
export(validateUsagiFile)
export(validateVocabularyFolder)
export(vocabularyFolderToSTCMVocabularyConcepClassTables)
export(writeUsagiFile)
importFrom(DBI,dbConnect)
importFrom(DBI,dbListFields)
importFrom(DBI,dbListTables)
importFrom(DataQualityDashboard,executeDqChecks)
importFrom(DatabaseConnector,connect)
importFrom(DatabaseConnector,createConnectionDetails)
importFrom(DatabaseConnector,dbExecute)
importFrom(DatabaseConnector,dbGetQuery)
importFrom(DatabaseConnector,dbListTables)
importFrom(DatabaseConnector,dbReadTable)
importFrom(DatabaseConnector,dbWriteTable)
importFrom(DatabaseConnector,disconnect)
importFrom(DatabaseConnector,executeSql)
importFrom(DatabaseConnector,renderTranslateExecuteSql)
importFrom(R6,R6Class)
importFrom(SqlRender,readSql)
importFrom(SqlRender,render)
importFrom(SqlRender,snakeCaseToCamelCase)
importFrom(SqlRender,translate)
importFrom(checkmate,assertCharacter)
importFrom(checkmate,assertClass)
importFrom(checkmate,assertDirectory)
importFrom(checkmate,assertDirectoryExists)
importFrom(checkmate,assertFileExists)
importFrom(checkmate,assertNames)
importFrom(checkmate,assertString)
importFrom(checkmate,assertSubset)
importFrom(checkmate,assertTibble)
importFrom(checkmate,assert_character)
importFrom(checkmate,assert_class)
importFrom(checkmate,assert_directory_exists)
importFrom(dplyr,across)
importFrom(dplyr,add_row)
importFrom(dplyr,any_of)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,collect)
importFrom(dplyr,count)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_if)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,rename_all)
importFrom(dplyr,rename_with)
importFrom(dplyr,row_number)
importFrom(dplyr,select)
importFrom(dplyr,semi_join)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,transmute)
importFrom(dplyr,ungroup)
importFrom(knitr,kable)
importFrom(lubridate,as_date)
importFrom(lubridate,ymd)
importFrom(purrr,flatten_chr)
importFrom(purrr,map2)
importFrom(purrr,map_chr)
importFrom(reactable,colDef)
importFrom(reactable,colFormat)
importFrom(reactable,reactable)
importFrom(readr,col_character)
importFrom(readr,col_date)
importFrom(readr,col_double)
importFrom(readr,col_integer)
importFrom(readr,cols)
importFrom(readr,read_csv)
importFrom(readr,write_csv)
importFrom(readr,write_tsv)
importFrom(scales,cut_si)
importFrom(scales,number)
importFrom(scales,percent)
importFrom(shiny,div)
importFrom(stringr,str_c)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(stringr,str_split)
importFrom(tibble,add_row)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)
importFrom(tidyr,gather)
importFrom(tidyr,spread)
importFrom(tidyr,unnest)
importFrom(tippy,tippy)