uberon.md

layout	ontology_detail
id	uberon
type	owl:Ontology
label	Uberon
title	Uberon multi-species anatomy ontology
build	checkout email_cc system method infallible svn --ignore-externals co http://svn.code.sf.net/p/obo/svn/uberon/trunk cjmungall@lbl.gov svn vcs 1
description	An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies
homepage	http://uberon.org
page	http://en.wikipedia.org/wiki/Uberon
twitter	uberanat
google_plus	+UberonOrg
wikidata_template	https://en.wikipedia.org/wiki/Template:Uberon
mailing_list	https://lists.sourceforge.net/lists/listinfo/obo-anatomy
biosharing	https://www.biosharing.org/bsg-000016
used_by	url seeAlso label type http://bgee.org/ https://www.biosharing.org/biodbcore-000228 bgee Database url seeAlso label https://www.encodeproject.org/ https://www.biosharing.org/biodbcore-000034 ENCODE url label http://fantom5-collaboration.gsc.riken.jp/ FANTOM5 url label type https://monarchinitiative.org/ Monarch Database url label type https://geneontology.org/ GO Database Database url label http://phenoscape.org Phenoscape url label type https://neuinfo.org/ Neuroscience Information Framework Database url label type https://scicrunch.org/ SciCrunch Database
funded_by	NIH R24OD011883 NIH R01HG004838 NIH P41HG002273 NSF DEB-0956049
canonical	uberon.owl
license	url label http://creativecommons.org/licenses/by/3.0/ CC-BY
taxon	id label NCBITaxon:33208 Metazoa
domain	anatomy
repository	https://github.com/obophenotype/uberon
tracker	https://github.com/obophenotype/uberon/issues
releases	http://purl.obolibrary.org/obo/uberon/releases/
contact	email label cjmungall@lbl.gov Chris Mungall
publications	id title http://www.ncbi.nlm.nih.gov/pubmed/22293552 Uberon, an integrative multi-species anatomy ontology id title http://www.ncbi.nlm.nih.gov/pubmed/25009735 Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
depicted_by	http://uberon.github.io/images/u-logo.jpg
exampleClass	UBERON_0002046
redirects	match url releases/ http://svn.code.sf.net/p/obo/svn/uberon/releases/ match url http://berkeleybop.org/ontologies/uberon/
dependencies	id subset go uberon/go_import.owl id subset cl uberon/cl_import.owl id subset chebi uberon/chebi_import.owl id subset pr uberon/pr_import.owl
browsers	label title url RGD Gene Ontology AmiGO 2 Browser http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=UBERON:0001062 label title url AmiGO (SUBSET) Gene Ontology AmiGO 2 Browser http://amigo.geneontology.org/amigo/term/UBERON:0001062#display-lineage-tab label title url Bgee (gene expression) Bgee gene expression queries http://bgee.org/?page=gene label title url FANTOM5 FANTOM5 Data Portal http://fantom.gsc.riken.jp/5/sstar/UBERON:0001890 label title url KnowledgeSpace INCF KnowledgeSpace Portal https://knowledge-space.org/index.php/pages/view/UBERON:0000061
products	id type title description is_canonical uberon.owl owl:Ontology Uberon core ontology true id type description title mireots_from uberon/ext.owl owl:Ontology Uberon extended Uberon edition that includes subsets of other ontologies and axioms connecting to them ncbitaxon id title description format type uberon/basic.obo Uberon basic Uberon edition that excludes external ontologies and most relations obo obo-basic-ontology id type page title description connects uberon/bridge/uberon-bridge-to-zfa.owl BridgeOntology https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies Uberon bridge to ZFA Taxonomic equivalence axioms connecting zebrafish-specific classes to generic uberon counterparts id uberon id zfa id type page title description connects uberon/bridge/uberon-bridge-to-ma.owl BridgeOntology https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies Uberon bridge to MA Taxonomic equivalence axioms connecting adult mouse specific classes to generic uberon counterparts id uberon id ma id type title description page taxon mireots_from uberon/composite-metazoan.owl MergedOntology Uberon composite metazoan ontology Extended uberon plus all metazoan ontologies https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies Metazoa ehdaa2 id type title page taxon mireots_from uberon/composite-vertebrate.owl MergedOntology Uberon composite vertebrate ontology https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies Metazoa ehdaa2

Uberon is an integrated cross-species ontology covering anatomical structures in animals. See the Uberon website for more info, or read the Uberon paper in Genome Biology.