create interactive focused truvari docker

Author: theisaacwong

truvari/5.4.0/Dockerfile

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+FROM continuumio/miniconda3
+
+COPY ./environment.yml /
+
+RUN apt-get update && \
+    apt-get full-upgrade -y && \
+    apt-get install -y --no-install-recommends \
+    wget \
+    curl \
+    bc \
+    unzip \
+    bzip2 \
+    less \
+    gcc \
+    jq \
+    git \
+    build-essential \
+    cmake \
+    clang \
+    libclang-dev \
+    libncurses-dev \
+    zlib1g-dev \
+    libbz2-dev \
+    libssl-dev \
+    liblzma-dev \
+    libcurl4-openssl-dev \
+    make \
+    cmake \
+    vim \
+    software-properties-common && \
+    apt-get -y clean  && \
+    apt-get -y autoclean  && \
+    apt-get -y autoremove && \
+    rm -rf /var/lib/apt/lists/*
+
+RUN conda env create -f /environment.yml && conda clean -a
+
+ENV LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/opt/conda/envs/truvari/lib/
+
+ENV PATH=/opt/conda/envs/truvari/bin/:${PATH}
+
+RUN echo "source activate truvari" > ~/.bashrc

truvari/5.4.0/environment.yml

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+name: truvari
+channels:
+  - conda-forge
+  - bioconda
+  - defaults
+dependencies:
+  - python
+  - truvari
+  - tabix
+  - bcftools
+  - samtools
+  - bedtools
+  - google-cloud-sdk
+prefix: /opt/conda/envs/truvari