Broken links in documentation

[lukruh]

There are a couple of links tagged as broken by sphinx's link-checker (filtered output file: broken-links.txt).

There is also one link reported as broken in #2789.
And https://mamba.readthedocs.io/en/latest/installation.html in the installation section does not work.

[katjaweigel]

Checklist for the links from broken-links.txt:

• recipes/legacy/recipe_schlund20jgr.rst:72: [broken] http://cliveg.bu.edu/modismisr/lai3g-fpar3g.html
• recipes/legacy/recipe_schlund20jgr.rst:71: [broken] http://apps.ecmwf.int/datasets/data/interim-full-moda/
• recipes/recipe_miles.rst:119: [broken] http://doi.org/10.1111/j.2153-3490.1950.tb00331.x
• recipes/recipe_perfmetrics.rst:21: [broken] http://dx.doi.org/10.1029/2007JD008972: 403 Client Error: Forbidden for url: https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2007JD008972 -> Works at the moment
• input.rst:84: [broken] http://prodiguer.github.io/synda/index.html
• community/upgrading.rst:9: [broken] http://www.esmvaltool.org/download/Righi_ESMValTool2-TechnicalOverview.pdf
• recipes/recipe_autoassess_landsurface_permafrost.rst:115: [broken] http://nsidc.org/data/ggd318.html
• recipes/recipe_diurnal_temperature_index.rst:54: [broken] http://www.sgc.se/ckfinder/userfiles/files/sokmotor/LiU67.pdf
• community/upgrading.rst:204: [broken] http://www.ncl.ucar.edu/current_release.shtml#PreloadedScripts6.4.0 -> Works at the moment
• recipes/recipe_meehl20sciadv.rst:9: [broken] https://advances.sciencemag.org/content/6/26/eaba1981 -> Works at the moment
• recipes/recipe_tcr.rst:10: [broken] https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2008JD010405 -> Works at the moment
• recipes/droughts/recipe_martin18grl.rst:9: [broken] https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2018GL079807 -> Works at the moment
• recipes/recipe_ecs.rst:10: [broken] https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2003GL018747 -> Works at the moment
• recipes/recipe_eyring06jgr.rst:9: [broken] https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2006JD007327 -> Works at the moment
• recipes/droughts/recipe_spei.rst:90: [broken] https://ascelibrary.org/doi/book/10.1061/9780784408056 -> Works at the moment
• recipes/recipe_bock20jgr.rst:315: [broken] https://cds.climate.copernicus.eu/cdsapp#!/home
• recipes/recipe_gier20bg.rst:145: [broken] https://cds.climate.copernicus.eu/cdsapp#!/dataset/satellite-carbon-dioxide?tab=form -> Works at the moment
• quickstart/installation.rst:138: [broken] https://docs.conda.io/projects/conda/en/latest/user-guide/getting-started.html#managing-environments -> Works at the moment
• community/code_documentation.rst:357: [broken] https://docs.esmvaltool.org/projects/esmvalcore
• recipes/recipe_modes_of_variability.rst:70: [broken] https://doi.org/10.1002/2015RG000509 -> Works at the moment
• recipes/recipe_schlund20esd.rst:122: [broken] https://doi.org/10.1002/2015GL065911 -> Works at the moment
• recipes/recipe_russell18jgr.rst:257: [broken] https://doi.org/10.1002/2017JC013461 -> Works at the moment
• recipes/recipe_climwip.rst:24: [broken] https://doi.org/10.1002/2016GL072012 -> Works at the moment
• recipes/recipe_extreme_index.rst:72: [broken] https://doi.org/10.1002/jgrd.50150 -> Works at the moment
• recipes/recipe_galytska23jgr.rst:72: [broken] https://doi.org/10.1002/essoar.10512569.1 -> Works at the moment but this is the prepring, should be maybe updated to final paper version?
• recipes/recipe_heatwaves_coldwaves.rst:55: [broken] https://doi.org/10.1002/joc.5158 -> Works at the moment
• recipes/recipe_multimodel_products.rst:66: [broken] https://doi.org/10.1002/qj.210 -> Works at the moment
• recipes/recipe_modes_of_variability.rst:66: [broken] https://doi.org/10.1002/qj.2411 -> Works at the moment
• recipes/recipe_zmnam.rst:14: [broken] https://doi.org/10.1002/qj.479 -> Works at the moment
• recipes/recipe_zmnam.rst:12: [broken] https://doi.org/10.1002/qj.49712656402 -> Works at the moment
• recipes/recipe_diurnal_temperature_index.rst:56: [broken] https://doi.org/10.1029/2004GL019998 -> Works at the moment
• recipes/recipe_extreme_index.rst:68: [broken] https://doi.org/10.1029/2005JD006290 -> Works at the moment
• recipes/recipe_bock20jgr.rst:330: [broken] https://doi.org/10.1029/2011JD017187 -> Works at the moment
• recipes/recipe_climwip.rst:24: [broken] https://doi.org/10.1029/2017JD027992 -> Works at the moment
• recipes/recipe_bock20jgr.rst:310: [broken] https://doi.org/10.1029/2019JD032321 -> Works at the moment
• recipes/legacy/recipe_schlund20jgr.rst:25: [broken] https://doi.org/10.1029/2019JG005619 -> Works at the moment
• recipes/recipe_modes_of_variability.rst:64: [broken] https://doi.org/10.1029/2012GL053284 -> Works at the moment
• recipes/recipe_tcre.rst:69: [broken] https://doi.org/10.1073/pnas.0805800106 -> Works at the moment
• recipes/recipe_diurnal_temperature_index.rst:60: [broken] https://doi.org/10.1073/pnas.1101377108 -> Works at the moment
• recipes/recipe_diurnal_temperature_index.rst:62: [broken] https://doi.org/10.1073/pnas.1006422107 -> Works at the moment
• recipes/recipe_zmnam.rst:10: [broken] https://doi.org/10.1126/science.1063315 -> Works at the moment
• recipes/recipe_meehl20sciadv.rst:78: [broken] https://doi.org/10.1126/sciadv.aba1981 -> Works at the moment
• recipes/recipe_miles.rst:13: [broken] https://doi.org/10.1175/JCLI-D-12-00032.1) -> Works at the moment
• recipes/recipe_extreme_index.rst:80: [broken] https://doi.org/10.2105/AJPH.87.9.1515 -> Works at the moment
• community/release_strategy/detailed_release_procedure.rst:141: [broken] https://esmvaltool.dkrz.de/shared/esmvaltool/v2.7.0
• changelog.rst:406: [broken] https://essopenarchive.org/doi/full/10.1002/essoar.10512569.1 -> Works at the moment but this is the prepring, should be maybe updated to final paper version?
• changelog.rst:711: [broken] https://esmvaltool--2533.org.readthedocs.build/en/2533/recipes/recipe_ipccwg1ar6ch3.html
• community/repository.rst:16: [broken] https://github.com/ESMValGroup/ESMValTool-private -> Works at the moment
• recipes/recipe_oceans.rst:284: [broken] https://github.com/ESMValGroup/ESMValTool/tree/main/esmvaltool/diag_scripts/ocean/: -> Works at the moment
• recipes/recipe_autoassess_stratosphere.rst:190: [broken] https://github.com/NCAS-CMS/NCAS-Useful-Documentation/tree/main/autoassess_review_results/stratosphere_AERmonZ/plots/aa_strato/autoassess_strato_test_1/HadGEM3-GC31-LL_vs_UKESM1-0-LL/stratosphere
• changelog.rst:348: [broken] https://github.com/Peter9191
• community/release_strategy/release_strategy.rst:568: [broken] https://github.com/conda-forge/esmvaltool-suite-feedstock#feedstock-maintainers -> Works at the moment
• recipes/recipe_hydro_forcing.rst:33: [broken] https://github.com/eWaterCycle/recipes_auxiliary_datasets/tree/main/
• community/private_repository.rst:59: [broken] https://github.com/esmalgroup/esmvaltool/pulls
• recipes/recipe_kcs.rst:18: [broken] https://iopscience.iop.org/1748-9326/9/11/115008/media/erl503687suppdata.pdf
• quickstart/installation.rst:60: [broken] https://mamba.readthedocs.io/en/latest/installation.html
• recipes/recipe_cox18nature.rst:19: [broken] https://onlinelibrary.wiley.com/doi/10.1111/j.2153-3490.1976.tb00696.x -> Works at the moment
• recipes/recipe_miles.rst:10: [broken] https://onlinelibrary.wiley.com/action/showCitFormats?doi=10.1111%2Fj.2153-3490.1950.tb00331.x -> Works at the moment not the main page (https://onlinelibrary.wiley.com/doi/10.1111/j.2153-3490.1950.tb00331.x) but the one listing the citation, maybe switch
• input.rst:45: [broken] https://portal.enes.org/data/data-metadata-service/analysis-platforms
• input.rst:45: [broken] https://portal.enes.org/data/data-metadata-service/climate-analytics-service
• recipes/legacy/recipe_schlund20jgr.rst:25: [broken] https://scikit-learn.org/stable/modules/ensemble.html#gradient-tree-boosting -> Works at the moment
• utils/utils.rst:351: [broken] https://sourceforge.net/projects/saxon/files/latest/download?source=files -> Works at the moment but it warns, that the original page has move to: https://github.com/Saxonica/Saxon-HE see also https://www.saxonica.com maybe update in any way?
• community/code_documentation.rst:446: [broken] https://the-turing-way.netlify.app/reproducible-research/licensing/licensing-software.html
• recipes/droughts/recipe_spei.rst:90: [broken] https://www.researchgate.net/publication/237049120_An_Update_for_the_Definition_of_Reference_Evapotranspiration -> Works at the moment
• community/code_documentation.rst:275: [broken] https://www.sphinx-doc.org/en/main/usage/restructuredtext/basics.html
• input.rst:7: [broken] https://www.wcrp-climate.org/wgcm-cmip/wgcm-cmip3
• input.rst:7: [broken] https://www.wcrp-climate.org/wgcm-cmip/wgcm-cmip5
• develop/dataset.rst:95: [broken] https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/data/downloaders/datasets/
• utils/RTW/tested_recipes.rst:14: [broken] https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/utils/recipe_test_workflow/site/jasmin-recipes.jinja
• changelog.rst:1110: [broken] https://github.com/jvegasbsc
• changelog.rst:1519: [broken] https://github.com/koir-su
• input.rst:24: [broken] https://github.com/orgs/ESMValGroup/projects/11
• changelog.rst:811: [broken] https://github.com/pypa/setuptools_scm/#default-versioning-scheme
• changelog.rst:921: [broken] OSX Test and Monitor Test GA tests are failing for all Pythons #2584 (comment)
• utils/RTW/tested_recipes.rst:13: [broken] https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/utils/recipe_test_workflow/site/dkrz-recipes.jinja
• utils/RTW/tested_recipes.rst:12: [broken] https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/utils/recipe_test_workflow/site/metoffice-recipes.jinja

[katjaweigel]

I'll first complete the check list, test if some are working (again) and tick them and then start a PR to fix some of the broken ones.

[katjaweigel]

Most of the DOI and some of the github links are working (but don't like automated checkers).
Here is a reduced list of links, which are really not working:

• recipes/legacy/recipe_schlund20jgr.rst:72: [broken] http://cliveg.bu.edu/modismisr/lai3g-fpar3g.html
  New link: I can't find the LAI3g data anymore. LAI4g data would be available following:
  "LAI -> Download using the link at the end of the abstract of the paper that describes this data set: Cao et al., 2023. Spatiotemporally consistent global dataset of the GIMMS leaf area index (GIMMS LAI4g) from 1982 to 2020, Earth Syst. Sci. Data, 15, 4877–4899, 2023, https://doi.org/10.5194/essd-15-4877-2023" from "https://sites.bu.edu/cliveg/datacodes/" LAI3g link removed PR: Update some easy to fix links in documentation #4256
• recipes/legacy/recipe_schlund20jgr.rst:71: [broken] http://apps.ecmwf.int/datasets/data/interim-full-moda/
  New link: https://cds.climate.copernicus.eu/stac-browser/collections/reanalysis-era-interim?.language=en PR: Update some easy to fix links in documentation #4256
• recipes/recipe_miles.rst:119: [broken] http://doi.org/10.1111/j.2153-3490.1950.tb00331.x
  New link: http://doi.org/10.3402/tellusa.v2i3.8546 PR: Update some easy to fix links in documentation #4256
• input.rst:84: [broken] http://prodiguer.github.io/synda/index.html
  New link: esgpull is an replacement for synda: https://github.com/ESGF/esgf-download , text updated, too. PR: Update some easy to fix links in documentation #4256
• community/upgrading.rst:9: [broken] http://www.esmvaltool.org/download/Righi_ESMValTool2-TechnicalOverview.pdf
  New link: https://doi.org/10.5194/gmd-13-1179-2020 PR: Update some easy to fix links in documentation #4256
• recipes/recipe_autoassess_landsurface_permafrost.rst:115: [broken] http://nsidc.org/data/ggd318.html
  New link: https://nsidc.org/data/ggd318/versions/2 PR: Update some easy to fix links in documentation #4256
• recipes/recipe_diurnal_temperature_index.rst:54: [broken] http://www.sgc.se/ckfinder/userfiles/files/sokmotor/LiU67.pdf
  New link: https://www.diva-portal.org/smash/get/diva2:622636/FULLTEXT01.pdf PR: Update some easy to fix links in documentation #4256
• recipes/recipe_bock20jgr.rst:315: [broken] https://cds.climate.copernicus.eu/cdsapp#!/home
  New link: https://doi.org/10.24381/cds.143582cf PR: Update some easy to fix links in documentation #4256
• community/code_documentation.rst:357: [broken] https://docs.esmvaltool.org/projects/esmvalcore
  New link: https://docs.esmvaltool.org/projects/ESMValCore/en/latest/index.html PR: Update some easy to fix links in documentation #4256
• community/release_strategy/detailed_release_procedure.rst:141: [broken] https://esmvaltool.dkrz.de/shared/esmvaltool/v2.7.0
  New link: https://esmvaltool.dkrz.de/shared/esmvaltool/stable_release/ PR: Update some easy to fix links in documentation #4256 (But the I'm not sure if the rest of the text is up to date? Might be changed for Improve the ESMValCore release documentation ESMValCore#2399 in any way? )
• changelog.rst:711: [broken] https://esmvaltool--2533.org.readthedocs.build/en/2533/recipes/recipe_ipccwg1ar6ch3.html
  New link: PR: Update some easy to fix links in documentation #4256
• recipes/recipe_autoassess_stratosphere.rst:190: [broken] https://github.com/NCAS-CMS/NCAS-Useful-Documentation/tree/main/autoassess_review_results/stratosphere_AERmonZ/plots/aa_strato/autoassess_strato_test_1/HadGEM3-GC31-LL_vs_UKESM1-0-LL/stratosphere
  New link: Seems not to be mentioned by NCAS-CMS anymore?
• changelog.rst:348: [broken] https://github.com/Peter9191
  New link: Does not exist anymore: delete? But I also don't find the link in changelog.rst?
• recipes/recipe_hydro_forcing.rst:33: [broken] https://github.com/eWaterCycle/recipes_auxiliary_datasets/tree/main/
  New link: eWaterCycle changed their repository and I don't find any shape files in there anymore. Since this is only one source/example for shapefiles maybe delete the sentence?
• community/private_repository.rst:59: [broken] https://github.com/esmalgroup/esmvaltool/pulls
  New link: https://github.com/ESMValGroup/ESMValCore/pulls PR: Update some easy to fix links in documentation #4256
• recipes/recipe_kcs.rst:18: [broken] https://iopscience.iop.org/1748-9326/9/11/115008/media/erl503687suppdata.pdf
  New link: https://iopscience.iop.org/article/10.1088/1748-9326/9/11/115008/data PR: Update some easy to fix links in documentation #4256
• quickstart/installation.rst:60: [broken] https://mamba.readthedocs.io/en/latest/installation.html
  New link: https://mamba.readthedocs.io/en/latest/installation/micromamba-installation.html PR: Update some easy to fix links in documentation #4256
• input.rst:45: [broken] https://portal.enes.org/data/data-metadata-service/analysis-platforms
  New link: https://is.enes.org/sdm-climate-analytics-data/ PR: Update some easy to fix links in documentation #4256
• input.rst:45: [broken] https://portal.enes.org/data/data-metadata-service/climate-analytics-service
  New link: Remove/ Text changed: similar to link above, exact service seems not to be available anymore. PR: Update some easy to fix links in documentation #4256
• community/code_documentation.rst:446: [broken] https://the-turing-way.netlify.app/reproducible-research/licensing/licensing-software.html
  New link: https://book.the-turing-way.org/reproducible-research/licensing/ PR: Update some easy to fix links in documentation #4256
• community/code_documentation.rst:275: [broken] https://www.sphinx-doc.org/en/main/usage/restructuredtext/basics.html
  New link: https://www.sphinx-doc.org/en/master/usage/restructuredtext/basics.html PR: Update some easy to fix links in documentation #4256
• input.rst:7: [broken] https://www.wcrp-climate.org/wgcm-cmip/wgcm-cmip3
  New link: https://wcrp-cmip.org/cmip-phases/cmip3/ PR: Update some easy to fix links in documentation #4256
• input.rst:7: [broken] https://www.wcrp-climate.org/wgcm-cmip/wgcm-cmip5
  New link: https://wcrp-cmip.org/cmip-phases/cmip5/ PR: Update some easy to fix links in documentation #4256
• develop/dataset.rst:95: [broken] https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/data/downloaders/datasets/
  New link: https://github.com/ESMValGroup/ESMValTool/tree/main/esmvaltool/cmorizers/data/downloaders/datasets PR: Update some easy to fix links in documentation #4256
• utils/RTW/tested_recipes.rst:14: [broken]
  New link: ?https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/utils/recipe_test_workflow/site/jasmin-recipes.jinja
  New link: https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/utils/recipe_test_workflow/site/jasmin/recipes.jinja PR: Update some easy to fix links in documentation #4256
• changelog.rst:1110: [broken] https://github.com/jvegasbsc
  New link: Link removed PR: Update some easy to fix links in documentation #4256
• changelog.rst:1519: [broken] https://github.com/koir-su
  New link: Link removed PR: Update some easy to fix links in documentation #4256
• input.rst:24: [broken] https://github.com/orgs/ESMValGroup/projects/11
  New link: There is no project 11 anymore, link removed. PR: Update some easy to fix links in documentation #4256 (Is it true, that CORDEX is still work in progress; more than other content, several CORDEX PRs have been closed?)
• utils/RTW/tested_recipes.rst:13: [broken] https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/utils/recipe_test_workflow/site/dkrz-recipes.jinja
  New link: https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/utils/recipe_test_workflow/site/dkrz/recipes.jinja PR: Update some easy to fix links in documentation #4256
• utils/RTW/tested_recipes.rst:12: [broken] https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/utils/recipe_test_workflow/site/metoffice-recipes.jinja
  New link: https://github.com/ESMValGroup/ESMValTool/blob/main/esmvaltool/utils/recipe_test_workflow/site/metoffice/recipes.jinja PR: Update some easy to fix links in documentation #4256

Some links are technically working but an update would be good (Paper preprints and similar):

• recipes/recipe_galytska23jgr.rst:72: [broken] https://doi.org/10.1002/essoar.10512569.1 -> Works at the moment but this is the prepring, should be maybe updated to final paper version?
• changelog.rst:406: [broken] https://essopenarchive.org/doi/full/10.1002/essoar.10512569.1 -> Works at the moment but this is the prepring, should be maybe updated to final paper version?
• recipes/recipe_miles.rst:10: [broken] https://onlinelibrary.wiley.com/action/showCitFormats?doi=10.1111%2Fj.2153-3490.1950.tb00331.x -> Works at the moment not the main page (https://onlinelibrary.wiley.com/doi/10.1111/j.2153-3490.1950.tb00331.x) but the one listing the citation, Even better would be the DOI for the original journal: http://doi.org/10.3402/tellusa.v2i3.8546 maybe switch? PR: Update some easy to fix links in documentation #4256
• utils/utils.rst:351: [broken] https://sourceforge.net/projects/saxon/files/latest/download?source=files -> Works at the moment but it warns, that the original page has move to: https://github.com/Saxonica/Saxon-HE see also https://www.saxonica.com maybe update in any way?