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Optimize short-case throughput separately #45

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@LouieSlocombe

icosane has roughly 0.2 ms of algorithm work but about 1–2 ms wall time. Gate the unconditional graph dump (line 48) behind a verbosity option, parse fixed molfile fields without per-line istringstream, and add an in-process batch/library interface. This will improve quick-suite and multi-molecule throughput but will not materially affect profile workloads.

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